PMC:7140597 / 2782-4253
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 64 | 1008-1011 | Gene | denotes | Kit | Gene:3815 |
| 65 | 890-893 | Gene | denotes | kit | Gene:3815 |
| 66 | 685-688 | Gene | denotes | kit | Gene:3815 |
| 67 | 557-560 | Gene | denotes | kit | Gene:3815 |
| 68 | 227-234 | Species | denotes | patient | Tax:9606 |
| 69 | 255-262 | Species | denotes | patient | Tax:9606 |
| 70 | 1320-1328 | Species | denotes | patients | Tax:9606 |
| 71 | 1456-1463 | Species | denotes | hcov-19 | Tax:2697049 |
| 72 | 358-372 | Chemical | denotes | Eagle’s medium | |
| 73 | 434-442 | Chemical | denotes | GlutaMAX | MESH:C054122 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T7 | 334-339 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T8 | 511-514 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T9 | 548-551 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T10 | 938-944 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T11 | 1013-1015 | Body_part | denotes | V2 | http://purl.org/sig/ont/fma/fma13443|http://purl.org/sig/ont/fma/fma68615 |
| T13 | 1181-1187 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T14 | 1384-1393 | Disease | denotes | Influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16 | 329-333 | http://purl.obolibrary.org/obo/CLO_0009524 | denotes | Vero |
| T17 | 329-333 | http://purl.obolibrary.org/obo/CLO_0050515 | denotes | Vero |
| T18 | 334-339 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T19 | 444-445 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T20 | 1055-1065 | http://purl.obolibrary.org/obo/OBI_0000968 | denotes | instrument |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 671-684 | http://purl.obolibrary.org/obo/GO_0003968 | denotes | Transcriptase |
| T2 | 671-684 | http://purl.obolibrary.org/obo/GO_0003899 | denotes | Transcriptase |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T19 | 0-58 | Sentence | denotes | The samples used for this study were nasopharyngeal swabs. |
| T20 | 59-235 | Sentence | denotes | These had been respectively sampled on the same day of hospitalisation, when symptoms occurred, for the Chinese tourist and 10 days after symptom onset for the Italian patient. |
| T21 | 236-443 | Sentence | denotes | An aliquot of each patient’s nasopharyngeal sample was used to generate in vitro cultures in Vero cells grown in modified Eagle’s medium (MEM; Gibco, Thermofisher, United Kingdom) supplemented with GlutaMAX. |
| T22 | 444-587 | Sentence | denotes | A total of 140 µL of each culture’s supernatant was used for viral RNA extraction using the QIAMP VIRAL RNA mini kit (Qiagen, Hilden, Germany). |
| T23 | 588-874 | Sentence | denotes | The obtained genomic RNAs were retro-transcribed using the SuperScript III Reverse Transcriptase kit (Invitrogen, Carisbad, United States (US)) and double-stranded DNAs were subsequently obtained by Klenow enzyme (Roche, Basel, Switzerland) according to the manufacturer’s instructions. |
| T24 | 875-1092 | Sentence | denotes | The Nextera XT kit was used for library preparations and whole genome sequencing was performed using the Illumina Miseq Reagent Nano Kit, V2 (2 x 150 cycles) on the Illumina MiSeq instrument (Illumina, San Diego, US). |
| T25 | 1093-1290 | Sentence | denotes | The reads were trimmed for quality and length and assembled by mapping to the reference genome from Wuhan, China (GenBank accession number: NC_045512.2) using Geneious Prime (www.geneious.com) [5]. |
| T26 | 1291-1471 | Sentence | denotes | Viral sequences from the two patients were deposited in the Global Initiative on Sharing All Influenza Data (GISAID; https://www.gisaid.org/epiflu-applications/next-hcov-19-app/ ). |
MyTest
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32265007-22543367-29331401 | 1287-1288 | 22543367 | denotes | 5 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32265007-22543367-29331401 | 1287-1288 | 22543367 | denotes | 5 |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T28 | 37-51 | UBERON:0001728 | denotes | nasopharyngeal |
| T29 | 265-279 | UBERON:0001728 | denotes | nasopharyngeal |
| T30 | 329-333 | CL_6 | denotes | Vero |
| T31 | 340-345 | GO:0040007 | denotes | grown |
| T32 | 505-510 | NCBITaxon:10239 | denotes | viral |
| T33 | 601-608 | SO:0001026 | denotes | genomic |
| T34 | 619-636 | GO:0001171 | denotes | retro-transcribed |
| T35 | 736-751 | SO:0000985 | denotes | double-stranded |
| T36 | 938-944 | SO:0001026 | denotes | genome |
| T37 | 995-1002 | CHEBI:33893;CHEBI:33893 | denotes | Reagent |
| T38 | 1097-1102 | SO:0000150 | denotes | reads |
| T39 | 1181-1187 | SO:0001505 | denotes | genome |
| T36099 | 37-51 | UBERON:0001728 | denotes | nasopharyngeal |
| T22443 | 265-279 | UBERON:0001728 | denotes | nasopharyngeal |
| T34235 | 329-333 | CL_6 | denotes | Vero |
| T49998 | 340-345 | GO:0040007 | denotes | grown |
| T82261 | 505-510 | NCBITaxon:10239 | denotes | viral |
| T35219 | 601-608 | SO:0001026 | denotes | genomic |
| T89238 | 619-636 | GO:0001171 | denotes | retro-transcribed |
| T35314 | 736-751 | SO:0000985 | denotes | double-stranded |
| T7658 | 938-944 | SO:0001026 | denotes | genome |
| T70392 | 995-1002 | CHEBI:33893;CHEBI:33893 | denotes | Reagent |
| T76648 | 1097-1102 | SO:0000150 | denotes | reads |
| T41676 | 1181-1187 | SO:0001505 | denotes | genome |