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PMC:7140597 / 12849-14677 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
179 46-56 Species denotes SARS-CoV-2 Tax:2697049
180 140-147 Species denotes patient Tax:9606
181 315-322 Species denotes patient Tax:9606
182 421-428 Species denotes patient Tax:9606
183 493-500 Species denotes patient Tax:9606
184 585-592 Species denotes patient Tax:9606
185 811-826 Species denotes Other sequences Tax:28384
186 1004-1012 Species denotes patients Tax:9606
187 1085-1095 Species denotes SARS-CoV-2 Tax:2697049
188 1807-1817 Species denotes SARS-CoV-2 Tax:2697049
189 306-314 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T72 31-38 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T73 283-289 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T74 1357-1368 Body_part denotes amino acids http://purl.org/sig/ont/fma/fma82739
T75 1632-1639 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T36 46-54 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T37 306-314 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T38 1085-1093 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T39 1807-1815 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T117 164-165 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T118 242-247 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T119 513-514 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T120 726-731 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T121 786-787 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T122 1259-1264 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T123 1447-1452 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T47 1357-1368 Chemical denotes amino acids http://purl.obolibrary.org/obo/CHEBI_33709
T48 1357-1362 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T49 1363-1368 Chemical denotes acids http://purl.obolibrary.org/obo/CHEBI_37527

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T95 0-260 Sentence denotes In this study, the full length genomes of two SARS-CoV-2 strains (EPI_ISL_412973 and EPI_ISL_412974) isolated in Italy, one from an Italian patient, the other from a Chinese tourist visiting Rome, are completely sequenced and analysed, after virus cultivation.
T96 261-438 Sentence denotes Compared to the viral genome sequence of the COVID-19 patient in Wuhan, the sequence from the Chinese tourist had two nt differences, while that of the Italian patient had four.
T97 439-558 Sentence denotes Phylogenetic analysis consistently placed the Italian patient’s strain in a distinct cluster from the tourist’s strain.
T98 559-810 Sentence denotes The strain of the Italian patient grouped with other viral strains identified in Germany and Mexico, while the strain from the Chinese tourist, related with the Wuhan virus strain, clustered with different European strains and a strain from Australia.
T99 811-1027 Sentence denotes Other sequences from strains collected in Europe, which were included in the phylogenetic analysis, ended up in separate clusters from the ones respectively containing the sequences of the two patients reported here.
T100 1028-1231 Sentence denotes The results are consistent with several introductions of SARS-CoV-2 in Europe and/or further circulation of the single strain originating in Wuhan with concurrent evolution and accumulation of mutations.
T101 1232-1469 Sentence denotes The mutations found in the virus identified in Lombardy, compared with the reference Wuhan strain, and the identification of amino acids changes, should be further investigated to understand whether they may affect virus characteristics.
T102 1470-1711 Sentence denotes Some limitations need be mentioned: first, the lack of epidemiological information available with most sequences deposited in the database; second, the number of genomes available at the time of the analysis and consequently their selection.
T103 1712-1828 Sentence denotes Nevertheless, these data may be useful to understand the dynamics of the local transmission of SARS-CoV-2 in Europe.

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T127 31-38 SO:0001026 denotes genomes
T128 46-56 SP_7 denotes SARS-CoV-2
T129 242-247 NCBITaxon:10239 denotes virus
T130 277-282 NCBITaxon:10239 denotes viral
T131 283-289 SO:0001026 denotes genome
T132 306-314 SP_7 denotes COVID-19
T133 612-617 NCBITaxon:10239 denotes viral
T134 726-731 NCBITaxon:10239 denotes virus
T135 1085-1095 SP_7 denotes SARS-CoV-2
T136 1259-1264 NCBITaxon:10239 denotes virus
T137 1447-1452 NCBITaxon:10239 denotes virus
T138 1632-1639 SO:0001026 denotes genomes
T139 1807-1817 SP_7 denotes SARS-CoV-2
T51835 31-38 SO:0001026 denotes genomes
T12887 46-56 SP_7 denotes SARS-CoV-2
T51126 242-247 NCBITaxon:10239 denotes virus
T98613 277-282 NCBITaxon:10239 denotes viral
T73410 283-289 SO:0001026 denotes genome
T85175 306-314 SP_7 denotes COVID-19
T83238 612-617 NCBITaxon:10239 denotes viral
T77672 726-731 NCBITaxon:10239 denotes virus
T43672 1085-1095 SP_7 denotes SARS-CoV-2
T47178 1259-1264 NCBITaxon:10239 denotes virus
T21942 1447-1452 NCBITaxon:10239 denotes virus
T78355 1632-1639 SO:0001026 denotes genomes
T9593 1807-1817 SP_7 denotes SARS-CoV-2