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PMC:7134578 / 1402-5591 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
44 12-18 Disease denotes cancer MESH:D009369
45 35-43 Disease denotes COVID-19 MESH:C000657245
51 262-273 Species denotes coronavirus Tax:11118
52 82-88 Disease denotes cancer MESH:D009369
53 201-207 Disease denotes cancer MESH:D009369
54 208-217 Disease denotes mortality MESH:D003643
55 321-328 Disease denotes cancers MESH:D009369
57 587-593 Species denotes people Tax:9606
62 998-1015 Species denotes Novel Coronavirus Tax:2697049
63 1020-1028 Disease denotes COVID-19 MESH:C000657245
64 1029-1038 Disease denotes infection MESH:D007239
65 1278-1286 Disease denotes COVID-19 MESH:C000657245
67 1999-2005 Species denotes people Tax:9606
70 2233-2254 Disease denotes coronavirus infection MESH:D018352
71 2310-2318 Disease denotes COVID-19 MESH:C000657245
79 2703-2711 Species denotes patients Tax:9606
80 2743-2751 Disease denotes diabetes MESH:D003920
81 2753-2759 Disease denotes cancer MESH:D009369
82 2765-2784 Disease denotes infectious diseases MESH:D003141
83 2958-2964 Disease denotes cancer MESH:D009369
84 3040-3046 Disease denotes cancer MESH:D009369
85 3145-3150 Disease denotes death MESH:D003643
93 3224-3236 Species denotes participants Tax:9606
94 3305-3313 Species denotes patients Tax:9606
95 3481-3489 Species denotes patients Tax:9606
96 3250-3258 Disease denotes COVID-19 MESH:C000657245
97 3271-3277 Disease denotes cancer MESH:D009369
98 3433-3438 Disease denotes death MESH:D003643
99 3581-3587 Disease denotes cancer MESH:D009369
105 3741-3749 Disease denotes COVID-19 MESH:C000657245
106 3750-3755 Disease denotes death MESH:D003643
107 3837-3854 Disease denotes diabetes mellitus MESH:D003920
108 3859-3875 Disease denotes multiple myeloma MESH:D009101
109 3879-3899 Disease denotes type of blood cancer MESH:D007022
113 4104-4112 Species denotes patients Tax:9606
114 4097-4103 Disease denotes cancer MESH:D009369
115 4143-4151 Disease denotes infected MESH:D007239

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T2 3887-3892 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T2 3887-3892 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178

LitCovid_AGAC

Id Subject Object Predicate Lexical cue
p98252s5 1484-1491 NegReg denotes reduced

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T17 12-18 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T18 35-43 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T19 82-88 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T20 201-207 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T21 1020-1028 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T22 1029-1038 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T23 1278-1286 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T24 2245-2254 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T25 2310-2318 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T26 2743-2751 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T27 2753-2759 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T28 2765-2775 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T29 2958-2964 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T30 3040-3046 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T31 3250-3258 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T32 3271-3277 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T33 3581-3587 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T34 3741-3749 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T35 3837-3854 Disease denotes diabetes mellitus http://purl.obolibrary.org/obo/MONDO_0005015
T36 3859-3875 Disease denotes multiple myeloma http://purl.obolibrary.org/obo/MONDO_0009693
T37 3868-3875 Disease denotes myeloma http://purl.obolibrary.org/obo/MONDO_0005170
T38 3887-3899 Disease denotes blood cancer http://purl.obolibrary.org/obo/MONDO_0002334
T39 3893-3899 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T40 3936-3938 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T41 4097-4103 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T15 146-147 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T16 485-495 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T17 618-619 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T18 896-900 http://purl.obolibrary.org/obo/PR_000001318 denotes sell
T19 1164-1165 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 1237-1240 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T21 1287-1290 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T22 1310-1320 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T23 1371-1374 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T24 1386-1387 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T25 1580-1581 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T26 1649-1652 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T27 1783-1784 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T28 1858-1859 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T29 1946-1947 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T30 2195-2200 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T31 2269-2279 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T32 2357-2358 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T33 2610-2611 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T34 2902-2912 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T35 2928-2929 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T36 3165-3166 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T37 3221-3223 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T38 3269-3270 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T39 3579-3580 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T40 3756-3759 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T41 3801-3802 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T42 3824-3825 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T43 3877-3878 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T44 3887-3892 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T45 3887-3892 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T46 4170-4171 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T2 1492-1497 Chemical denotes sales http://purl.obolibrary.org/obo/CHEBI_24866
T3 3296-3301 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T4 3673-3678 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T5 3724-3729 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T6 4183-4188 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T9 12-18 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T10 82-88 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T11 201-207 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T12 2753-2759 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T13 2958-2964 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T14 3040-3046 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T15 3271-3277 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T16 3581-3587 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T17 3837-3854 Phenotype denotes diabetes mellitus http://purl.obolibrary.org/obo/HP_0000819
T18 3859-3875 Phenotype denotes multiple myeloma http://purl.obolibrary.org/obo/HP_0006775
T19 3887-3899 Phenotype denotes blood cancer http://purl.obolibrary.org/obo/HP_0001909
T20 4097-4103 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T10 0-63 Sentence denotes Upheaval in cancer care during the COVID-19 outbreak in Nigeria
T11 64-355 Sentence denotes “The way we treat cancer over the next few months will change enormously…” writes a British Oncologist. “…It is highly probable that the cancer mortality and morbidity will rise, not because of the coronavirus pandemic, but because we are not able to treat cancers as we should normally [1].
T12 356-617 Sentence denotes In these uncertain times, we are having to make necessary adjustments to social distancing, large religious, academic and social activities are being shut down, with law enforcement agencies stationed in strategic places to ensure people do not gather as usual.
T13 618-805 Sentence denotes A recent early morning drive on commercial routes and the ever congested Third Mainland Bridge and Ikorodu Road in Lagos state is smooth with low noise pollution and unusually free roads.
T14 806-997 Sentence denotes The agile street entrepreneurs are present but look frustrated because they are unable to sell their wares and products, as there is neither traffic nor the consequent abundance of customers.
T15 998-1144 Sentence denotes Novel Coronavirus, or COVID-19 infection, entered mainstream consciousness in December 2019 via the media when it first broke out in Wuhan, China.
T16 1145-1277 Sentence denotes It is now becoming a stark global force for many, dominating political decision-making that has direct implications for our liberty.
T17 1278-1448 Sentence denotes COVID-19 has disrupted economic activities around the globe such as trading and shipping and has ushered in a wave of scarcity and panic buying of essential products [2].
T18 1449-1571 Sentence denotes There are other problems including reduced sales revenue, pay cuts and job losses, and disruption of health care services.
T19 1572-1839 Sentence denotes This is a global reality and Lagos state, the commercial hub of the country, has recorded 30 positive cases (at the time of writing) and discharged home two cases after they had received weeks of care whilst at a government-approved isolation centre in the State [3].
T20 1840-1985 Sentence denotes However, there is a strong possibility that there are undetected and asymptomatic cases; hence we may see a significant rise in the coming weeks.
T21 1986-2201 Sentence denotes As expected, people with ill health will present to clinics and emergency wards, and health care workers will continue to be at the frontline of this pandemic whilst being at increased risk of exposure to the virus.
T22 2202-2298 Sentence denotes To control the transmission of coronavirus infection many clinical activities have been reduced.
T23 2299-2693 Sentence denotes Suspicious COVID-19 cases are being identified, following a risk-assessment [4] while confirmed cases are referred or directly picked up for government- supervised isolation in approved facilities, by the Nigeria Centre for Disease Control (NCDC), autopsies are being deferred and some health care workers with a history of contact or exposure are now placed on home supervised self-quarantine.
T24 2694-2852 Sentence denotes Many ill patients too, with conditions including diabetes, cancer, and infectious diseases may be stranded at home or stuck on the wards of health facilities.
T25 2853-2935 Sentence denotes Several clinical, social, academic and religious activities have ground to a halt.
T26 2936-3151 Sentence denotes For those living with cancer, the diseases will continue to grow in the absence of treatment, therefore cancer may spread, develop resistance to treatments, cause multiple complications or, in some instances, death.
T27 3152-3290 Sentence denotes Reports from a nationwide study in China by Wenhua Liang stated that 18 participants out of 1,590 COVID-19 cases had a cancer history [5].
T28 3291-3439 Sentence denotes This group of patients, though small, recorded severe adverse events such as admission to the intensive care unit for invasive ventilation or death.
T29 3440-3553 Sentence denotes These adverse events were most common in patients who had received chemotherapy or surgery within the last month.
T30 3554-3730 Sentence denotes This study reported that a cancer history represented the highest risk for severe events especially in the elderly age group and clinical deterioration was rapid in this group.
T31 3731-3785 Sentence denotes The first COVID-19 death has been recorded in Nigeria.
T32 3786-3900 Sentence denotes It was that of a 67-year-old man with a history of diabetes mellitus and multiple myeloma, a type of blood cancer.
T33 3901-4022 Sentence denotes He was undergoing chemotherapy and he had just returned to Nigeria following medical treatment in the United Kingdom [6].
T34 4023-4189 Sentence denotes Our priority at this time should be to intensify public education amongst cancer patients and limit their risk of being infected as they fall into a vulnerable group.

2_test

Id Subject Object Predicate Lexical cue
32269597-32066541-26439896 3287-3288 32066541 denotes 5

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T11 35-43 SP_7 denotes COVID-19
T12 262-273 NCBITaxon:11118 denotes coronavirus
T13 587-593 NCBITaxon:9606 denotes people
T14 1004-1015 NCBITaxon:11118 denotes Coronavirus
T15 1020-1028 SP_7 denotes COVID-19
T16 1278-1286 SP_7 denotes COVID-19
T17 1332-1337 UBERON:0010230 denotes globe
T18 1999-2005 NCBITaxon:9606 denotes people
T19 2195-2200 NCBITaxon:10239 denotes virus
T20 2205-2212 GO:0065007 denotes control
T21 2233-2244 NCBITaxon:11118 denotes coronavirus
T22 2310-2318 SP_7 denotes COVID-19
T23 2996-3000 GO:0040007 denotes grow
T24 3145-3150 GO:0016265 denotes death
T25 3250-3258 SP_7 denotes COVID-19
T26 3433-3438 GO:0016265 denotes death
T27 3741-3749 SP_7 denotes COVID-19
T28 3750-3755 GO:0016265 denotes death
T29 3815-3818 NCBITaxon:9606 denotes man
T30 3868-3875 CL:0000763 denotes myeloma
T31 3887-3892 UBERON:0000178 denotes blood
T18720 35-43 SP_7 denotes COVID-19
T81927 262-273 NCBITaxon:11118 denotes coronavirus
T15312 587-593 NCBITaxon:9606 denotes people
T77965 1004-1015 NCBITaxon:11118 denotes Coronavirus
T3701 1020-1028 SP_7 denotes COVID-19
T98542 1278-1286 SP_7 denotes COVID-19
T84340 1332-1337 UBERON:0010230 denotes globe
T28689 1999-2005 NCBITaxon:9606 denotes people
T69351 2195-2200 NCBITaxon:10239 denotes virus
T10189 2205-2212 GO:0065007 denotes control
T4056 2233-2244 NCBITaxon:11118 denotes coronavirus
T46918 2310-2318 SP_7 denotes COVID-19
T51458 2996-3000 GO:0040007 denotes grow
T24569 3145-3150 GO:0016265 denotes death
T75341 3250-3258 SP_7 denotes COVID-19
T41815 3433-3438 GO:0016265 denotes death
T85011 3741-3749 SP_7 denotes COVID-19
T78253 3750-3755 GO:0016265 denotes death
T75315 3815-3818 NCBITaxon:9606 denotes man
T52062 3868-3875 CL:0000763 denotes myeloma
T47279 3887-3892 UBERON:0000178 denotes blood

MyTest

Id Subject Object Predicate Lexical cue
32269597-32066541-26439896 3287-3288 32066541 denotes 5