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PMC:7128678 / 26182-26896 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
785 86-96 Species denotes SARS-CoV-2 Tax:2697049
786 125-135 Species denotes SARS-CoV-2 Tax:2697049
787 378-383 Species denotes human Tax:9606
788 417-427 Species denotes SARS-CoV-2 Tax:2697049
789 97-102 Gene denotes spike Gene:43740568
790 46-57 Chemical denotes ganglioside MESH:D005732
791 245-248 Chemical denotes GM1 MESH:D005677
792 283-293 Chemical denotes asparagine MESH:D001216
793 535-546 Chemical denotes ganglioside MESH:D005732
794 606-609 Chemical denotes GBD
795 638-648 Chemical denotes asparagine MESH:D001216

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T575 46-57 CHEBI:5386;CHEBI:5386 denotes ganglioside
T576 66-72 SO:0000417 denotes domain
T577 86-96 SP_7 denotes SARS-CoV-2
T578 125-135 SP_7 denotes SARS-CoV-2
T579 136-144 SO:0001060 denotes isolates
T580 327-332 SO:0000162 denotes sites
T581 378-383 SP_6;NCBITaxon:9606 denotes human
T582 388-394 NCBITaxon:33208 denotes animal
T583 395-402 NCBITaxon:10239 denotes viruses
T584 417-427 SP_7 denotes SARS-CoV-2
T585 535-546 CHEBI:28892;CHEBI:28892 denotes ganglioside

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T176 8-18 Body_part denotes Amino acid http://purl.org/sig/ont/fma/fma82739
T177 46-57 Body_part denotes ganglioside http://purl.org/sig/ont/fma/fma82816
T178 103-110 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T179 213-223 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T180 492-502 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T181 535-546 Body_part denotes ganglioside http://purl.org/sig/ont/fma/fma82816

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T125 86-94 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T126 125-133 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T127 417-425 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T205 113-114 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T206 203-206 http://purl.obolibrary.org/obo/CLO_0001002 denotes 162
T207 213-232 http://purl.obolibrary.org/obo/CHEBI_33708 denotes amino acid residues
T208 213-232 http://purl.obolibrary.org/obo/PR_000036907 denotes amino acid residues
T209 361-362 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T210 378-383 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T211 388-394 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T212 395-402 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T213 450-453 http://purl.obolibrary.org/obo/CLO_0001002 denotes 162

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T647 8-18 Chemical denotes Amino acid http://purl.obolibrary.org/obo/CHEBI_33704
T648 14-18 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T649 46-57 Chemical denotes ganglioside http://purl.obolibrary.org/obo/CHEBI_28892
T650 103-110 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T651 213-223 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T652 213-218 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T653 219-223 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T654 245-248 Chemical denotes GM1 http://purl.obolibrary.org/obo/CHEBI_18216|http://purl.obolibrary.org/obo/CHEBI_61048|http://purl.obolibrary.org/obo/CHEBI_73110
T657 283-293 Chemical denotes asparagine http://purl.obolibrary.org/obo/CHEBI_22653
T658 492-502 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T659 492-497 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T660 498-502 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T661 535-546 Chemical denotes ganglioside http://purl.obolibrary.org/obo/CHEBI_28892
T662 638-648 Chemical denotes asparagine http://purl.obolibrary.org/obo/CHEBI_22653

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T10 313-326 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T11 668-681 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T43 245-248 GlycoEpitope denotes GM1 http://www.glycoepitope.jp/epitopes/EP0050

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T209 0-208 Sentence denotes Fig. 10 Amino acid sequence alignments of the ganglioside-binding domain (GBD) of the SARS-CoV-2 spike protein. (a) Clinical SARS-CoV-2 isolates aligned with the reference sequence (6VSB_A, fragment 111–162).
T210 209-278 Sentence denotes The amino acid residues involved in GM1 binding are indicated in red.
T211 279-455 Sentence denotes Two asparagine residues acting as glycosylation sites are highlighted in yellow. (b) Alignments of human and animal viruses compared with SARS-CoV-2 (6VSB_A, fragment 111–162).
T212 456-714 Sentence denotes Deletions are highlighted in green, amino acid changes in residues involved in ganglioside binding are highlighted in blue, conserved residues of the GBD are highlighted in red, and asparagine residues acting as glycosylation sites are highlighted in yellow.