PMC:7128678 / 21337-22204
Annnotations
LitCovid-PubTator
{"project":"LitCovid-PubTator","denotations":[{"id":"618","span":{"begin":37,"end":68},"obj":"Gene"},{"id":"619","span":{"begin":70,"end":75},"obj":"Gene"},{"id":"620","span":{"begin":557,"end":558},"obj":"Gene"},{"id":"621","span":{"begin":80,"end":90},"obj":"Species"},{"id":"622","span":{"begin":20,"end":32},"obj":"Chemical"},{"id":"623","span":{"begin":329,"end":340},"obj":"Chemical"},{"id":"624","span":{"begin":377,"end":382},"obj":"Chemical"},{"id":"625","span":{"begin":429,"end":441},"obj":"Chemical"},{"id":"626","span":{"begin":458,"end":469},"obj":"Chemical"},{"id":"627","span":{"begin":730,"end":741},"obj":"Chemical"},{"id":"628","span":{"begin":788,"end":793},"obj":"Chemical"},{"id":"629","span":{"begin":832,"end":843},"obj":"Chemical"},{"id":"630","span":{"begin":848,"end":866},"obj":"Chemical"},{"id":"631","span":{"begin":592,"end":601},"obj":"Disease"}],"attributes":[{"id":"A618","pred":"tao:has_database_id","subj":"618","obj":"Gene:59272"},{"id":"A619","pred":"tao:has_database_id","subj":"619","obj":"Gene:59272"},{"id":"A620","pred":"tao:has_database_id","subj":"620","obj":"Gene:43740568"},{"id":"A621","pred":"tao:has_database_id","subj":"621","obj":"Tax:2697049"},{"id":"A622","pred":"tao:has_database_id","subj":"622","obj":"MESH:D005732"},{"id":"A623","pred":"tao:has_database_id","subj":"623","obj":"MESH:D005732"},{"id":"A624","pred":"tao:has_database_id","subj":"624","obj":"MESH:D008055"},{"id":"A625","pred":"tao:has_database_id","subj":"625","obj":"MESH:D005732"},{"id":"A626","pred":"tao:has_database_id","subj":"626","obj":"MESH:D002784"},{"id":"A627","pred":"tao:has_database_id","subj":"627","obj":"MESH:D005732"},{"id":"A628","pred":"tao:has_database_id","subj":"628","obj":"MESH:D008055"},{"id":"A629","pred":"tao:has_database_id","subj":"629","obj":"MESH:D002738"},{"id":"A630","pred":"tao:has_database_id","subj":"630","obj":"MESH:D006886"},{"id":"A631","pred":"tao:has_database_id","subj":"631","obj":"MESH:D007239"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Dual recognition of gangliosides and angiotensin-converting enzyme-2 (ACE-2) by SARS-CoV-2 spike (S) protein. The viral protein displays two distinct domains, the tips of which are available for distinct types of interactions. The receptor-binding domain binds to the ACE-2 receptor, and the N-terminal domain (NTD) binds to the ganglioside-rich domain of the plasma membrane. Lipid rafts, which are membrane domains enriched in gangliosides (in yellow) and cholesterol (in blue), provide a perfect attractive interface for adequately positioning the viral S protein at the first step of the infection process. These structural and molecular modelling studies suggest that amino acid residues 111–162 of the NTD form a functional ganglioside-binding domain, the interaction of which with lipid rafts can be efficiently prevented by chloroquine and hydroxychloroquine."}
LitCovid-PMC-OGER-BB
{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T453","span":{"begin":20,"end":32},"obj":"CHEBI:5386;CHEBI:5386"},{"id":"T454","span":{"begin":37,"end":68},"obj":"PG_10;PR:000003622"},{"id":"T455","span":{"begin":70,"end":75},"obj":"G_3;PG_10;PR:000003622"},{"id":"T456","span":{"begin":80,"end":84},"obj":"PR:000014459;SP_7"},{"id":"T457","span":{"begin":84,"end":90},"obj":"SP_7"},{"id":"T458","span":{"begin":114,"end":119},"obj":"NCBITaxon:10239"},{"id":"T459","span":{"begin":150,"end":157},"obj":"SO:0000417"},{"id":"T460","span":{"begin":248,"end":254},"obj":"SO:0000417"},{"id":"T461","span":{"begin":268,"end":273},"obj":"G_3;PG_10;PR:000003622"},{"id":"T462","span":{"begin":303,"end":309},"obj":"SO:0000417"},{"id":"T463","span":{"begin":329,"end":340},"obj":"CHEBI:16856;CHEBI:16856"},{"id":"T464","span":{"begin":346,"end":352},"obj":"SO:0000417"},{"id":"T465","span":{"begin":360,"end":375},"obj":"GO:0005886"},{"id":"T466","span":{"begin":377,"end":382},"obj":"CHEBI:18059;CHEBI:18059;GO:0045121"},{"id":"T467","span":{"begin":383,"end":388},"obj":"GO:0045121"},{"id":"T468","span":{"begin":400,"end":408},"obj":"GO:0016020"},{"id":"T469","span":{"begin":409,"end":416},"obj":"GO:0044425"},{"id":"T470","span":{"begin":429,"end":441},"obj":"CHEBI:5386;CHEBI:5386"},{"id":"T471","span":{"begin":458,"end":469},"obj":"CHEBI:16113;CHEBI:16113"},{"id":"T472","span":{"begin":551,"end":556},"obj":"NCBITaxon:10239"},{"id":"T473","span":{"begin":557,"end":566},"obj":"PG_1"},{"id":"T474","span":{"begin":730,"end":741},"obj":"CHEBI:5386;CHEBI:5386"},{"id":"T475","span":{"begin":750,"end":756},"obj":"SO:0000417"},{"id":"T476","span":{"begin":788,"end":793},"obj":"CHEBI:18059;CHEBI:18059;GO:0045121"},{"id":"T477","span":{"begin":794,"end":799},"obj":"GO:0045121"},{"id":"T478","span":{"begin":832,"end":843},"obj":"CHEBI:3638;CHEBI:3638;DG_10"},{"id":"T479","span":{"begin":848,"end":866},"obj":"CHEBI:5801;CHEBI:5801;DG_20"}],"text":"Dual recognition of gangliosides and angiotensin-converting enzyme-2 (ACE-2) by SARS-CoV-2 spike (S) protein. The viral protein displays two distinct domains, the tips of which are available for distinct types of interactions. The receptor-binding domain binds to the ACE-2 receptor, and the N-terminal domain (NTD) binds to the ganglioside-rich domain of the plasma membrane. Lipid rafts, which are membrane domains enriched in gangliosides (in yellow) and cholesterol (in blue), provide a perfect attractive interface for adequately positioning the viral S protein at the first step of the infection process. These structural and molecular modelling studies suggest that amino acid residues 111–162 of the NTD form a functional ganglioside-binding domain, the interaction of which with lipid rafts can be efficiently prevented by chloroquine and hydroxychloroquine."}
LitCovid-PD-FMA-UBERON
{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T131","span":{"begin":20,"end":32},"obj":"Body_part"},{"id":"T132","span":{"begin":101,"end":108},"obj":"Body_part"},{"id":"T133","span":{"begin":120,"end":127},"obj":"Body_part"},{"id":"T134","span":{"begin":329,"end":340},"obj":"Body_part"},{"id":"T135","span":{"begin":360,"end":375},"obj":"Body_part"},{"id":"T136","span":{"begin":377,"end":382},"obj":"Body_part"},{"id":"T137","span":{"begin":429,"end":441},"obj":"Body_part"},{"id":"T138","span":{"begin":559,"end":566},"obj":"Body_part"},{"id":"T139","span":{"begin":673,"end":683},"obj":"Body_part"},{"id":"T140","span":{"begin":730,"end":741},"obj":"Body_part"},{"id":"T141","span":{"begin":788,"end":793},"obj":"Body_part"}],"attributes":[{"id":"A131","pred":"fma_id","subj":"T131","obj":"http://purl.org/sig/ont/fma/fma82816"},{"id":"A132","pred":"fma_id","subj":"T132","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A133","pred":"fma_id","subj":"T133","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A134","pred":"fma_id","subj":"T134","obj":"http://purl.org/sig/ont/fma/fma82816"},{"id":"A135","pred":"fma_id","subj":"T135","obj":"http://purl.org/sig/ont/fma/fma63841"},{"id":"A136","pred":"fma_id","subj":"T136","obj":"http://purl.org/sig/ont/fma/fma67264"},{"id":"A137","pred":"fma_id","subj":"T137","obj":"http://purl.org/sig/ont/fma/fma82816"},{"id":"A138","pred":"fma_id","subj":"T138","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A139","pred":"fma_id","subj":"T139","obj":"http://purl.org/sig/ont/fma/fma82739"},{"id":"A140","pred":"fma_id","subj":"T140","obj":"http://purl.org/sig/ont/fma/fma82816"},{"id":"A141","pred":"fma_id","subj":"T141","obj":"http://purl.org/sig/ont/fma/fma67264"}],"text":"Dual recognition of gangliosides and angiotensin-converting enzyme-2 (ACE-2) by SARS-CoV-2 spike (S) protein. The viral protein displays two distinct domains, the tips of which are available for distinct types of interactions. The receptor-binding domain binds to the ACE-2 receptor, and the N-terminal domain (NTD) binds to the ganglioside-rich domain of the plasma membrane. Lipid rafts, which are membrane domains enriched in gangliosides (in yellow) and cholesterol (in blue), provide a perfect attractive interface for adequately positioning the viral S protein at the first step of the infection process. These structural and molecular modelling studies suggest that amino acid residues 111–162 of the NTD form a functional ganglioside-binding domain, the interaction of which with lipid rafts can be efficiently prevented by chloroquine and hydroxychloroquine."}
LitCovid-PD-MONDO
{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T92","span":{"begin":80,"end":88},"obj":"Disease"},{"id":"T93","span":{"begin":311,"end":314},"obj":"Disease"},{"id":"T95","span":{"begin":592,"end":601},"obj":"Disease"},{"id":"T96","span":{"begin":708,"end":711},"obj":"Disease"}],"attributes":[{"id":"A92","pred":"mondo_id","subj":"T92","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A93","pred":"mondo_id","subj":"T93","obj":"http://purl.obolibrary.org/obo/MONDO_0008449"},{"id":"A94","pred":"mondo_id","subj":"T93","obj":"http://purl.obolibrary.org/obo/MONDO_0018075"},{"id":"A95","pred":"mondo_id","subj":"T95","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A96","pred":"mondo_id","subj":"T96","obj":"http://purl.obolibrary.org/obo/MONDO_0008449"},{"id":"A97","pred":"mondo_id","subj":"T96","obj":"http://purl.obolibrary.org/obo/MONDO_0018075"}],"text":"Dual recognition of gangliosides and angiotensin-converting enzyme-2 (ACE-2) by SARS-CoV-2 spike (S) protein. The viral protein displays two distinct domains, the tips of which are available for distinct types of interactions. The receptor-binding domain binds to the ACE-2 receptor, and the N-terminal domain (NTD) binds to the ganglioside-rich domain of the plasma membrane. Lipid rafts, which are membrane domains enriched in gangliosides (in yellow) and cholesterol (in blue), provide a perfect attractive interface for adequately positioning the viral S protein at the first step of the infection process. These structural and molecular modelling studies suggest that amino acid residues 111–162 of the NTD form a functional ganglioside-binding domain, the interaction of which with lipid rafts can be efficiently prevented by chloroquine and hydroxychloroquine."}
LitCovid-PD-CLO
{"project":"LitCovid-PD-CLO","denotations":[{"id":"T167","span":{"begin":360,"end":366},"obj":"http://purl.obolibrary.org/obo/UBERON_0001969"},{"id":"T168","span":{"begin":367,"end":375},"obj":"http://purl.obolibrary.org/obo/UBERON_0000158"},{"id":"T169","span":{"begin":400,"end":408},"obj":"http://purl.obolibrary.org/obo/UBERON_0000158"},{"id":"T170","span":{"begin":489,"end":490},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T171","span":{"begin":673,"end":692},"obj":"http://purl.obolibrary.org/obo/CHEBI_33708"},{"id":"T172","span":{"begin":673,"end":692},"obj":"http://purl.obolibrary.org/obo/PR_000036907"},{"id":"T173","span":{"begin":697,"end":700},"obj":"http://purl.obolibrary.org/obo/CLO_0001002"},{"id":"T174","span":{"begin":717,"end":718},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"text":"Dual recognition of gangliosides and angiotensin-converting enzyme-2 (ACE-2) by SARS-CoV-2 spike (S) protein. The viral protein displays two distinct domains, the tips of which are available for distinct types of interactions. The receptor-binding domain binds to the ACE-2 receptor, and the N-terminal domain (NTD) binds to the ganglioside-rich domain of the plasma membrane. Lipid rafts, which are membrane domains enriched in gangliosides (in yellow) and cholesterol (in blue), provide a perfect attractive interface for adequately positioning the viral S protein at the first step of the infection process. These structural and molecular modelling studies suggest that amino acid residues 111–162 of the NTD form a functional ganglioside-binding domain, the interaction of which with lipid rafts can be efficiently prevented by chloroquine and hydroxychloroquine."}
LitCovid-PD-CHEBI
{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T498","span":{"begin":20,"end":32},"obj":"Chemical"},{"id":"T499","span":{"begin":37,"end":48},"obj":"Chemical"},{"id":"T500","span":{"begin":101,"end":108},"obj":"Chemical"},{"id":"T501","span":{"begin":120,"end":127},"obj":"Chemical"},{"id":"T502","span":{"begin":329,"end":340},"obj":"Chemical"},{"id":"T503","span":{"begin":377,"end":382},"obj":"Chemical"},{"id":"T504","span":{"begin":429,"end":441},"obj":"Chemical"},{"id":"T505","span":{"begin":458,"end":469},"obj":"Chemical"},{"id":"T506","span":{"begin":559,"end":566},"obj":"Chemical"},{"id":"T507","span":{"begin":673,"end":683},"obj":"Chemical"},{"id":"T508","span":{"begin":673,"end":678},"obj":"Chemical"},{"id":"T509","span":{"begin":679,"end":683},"obj":"Chemical"},{"id":"T510","span":{"begin":730,"end":741},"obj":"Chemical"},{"id":"T511","span":{"begin":788,"end":793},"obj":"Chemical"},{"id":"T512","span":{"begin":832,"end":843},"obj":"Chemical"},{"id":"T513","span":{"begin":848,"end":866},"obj":"Chemical"}],"attributes":[{"id":"A498","pred":"chebi_id","subj":"T498","obj":"http://purl.obolibrary.org/obo/CHEBI_28892"},{"id":"A499","pred":"chebi_id","subj":"T499","obj":"http://purl.obolibrary.org/obo/CHEBI_48433"},{"id":"A500","pred":"chebi_id","subj":"T500","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A501","pred":"chebi_id","subj":"T501","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A502","pred":"chebi_id","subj":"T502","obj":"http://purl.obolibrary.org/obo/CHEBI_28892"},{"id":"A503","pred":"chebi_id","subj":"T503","obj":"http://purl.obolibrary.org/obo/CHEBI_18059"},{"id":"A504","pred":"chebi_id","subj":"T504","obj":"http://purl.obolibrary.org/obo/CHEBI_28892"},{"id":"A505","pred":"chebi_id","subj":"T505","obj":"http://purl.obolibrary.org/obo/CHEBI_16113"},{"id":"A506","pred":"chebi_id","subj":"T506","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A507","pred":"chebi_id","subj":"T507","obj":"http://purl.obolibrary.org/obo/CHEBI_33709"},{"id":"A508","pred":"chebi_id","subj":"T508","obj":"http://purl.obolibrary.org/obo/CHEBI_46882"},{"id":"A509","pred":"chebi_id","subj":"T509","obj":"http://purl.obolibrary.org/obo/CHEBI_37527"},{"id":"A510","pred":"chebi_id","subj":"T510","obj":"http://purl.obolibrary.org/obo/CHEBI_28892"},{"id":"A511","pred":"chebi_id","subj":"T511","obj":"http://purl.obolibrary.org/obo/CHEBI_18059"},{"id":"A512","pred":"chebi_id","subj":"T512","obj":"http://purl.obolibrary.org/obo/CHEBI_3638"},{"id":"A513","pred":"chebi_id","subj":"T513","obj":"http://purl.obolibrary.org/obo/CHEBI_5801"}],"text":"Dual recognition of gangliosides and angiotensin-converting enzyme-2 (ACE-2) by SARS-CoV-2 spike (S) protein. The viral protein displays two distinct domains, the tips of which are available for distinct types of interactions. The receptor-binding domain binds to the ACE-2 receptor, and the N-terminal domain (NTD) binds to the ganglioside-rich domain of the plasma membrane. Lipid rafts, which are membrane domains enriched in gangliosides (in yellow) and cholesterol (in blue), provide a perfect attractive interface for adequately positioning the viral S protein at the first step of the infection process. These structural and molecular modelling studies suggest that amino acid residues 111–162 of the NTD form a functional ganglioside-binding domain, the interaction of which with lipid rafts can be efficiently prevented by chloroquine and hydroxychloroquine."}
LitCovid-sentences
{"project":"LitCovid-sentences","denotations":[{"id":"T180","span":{"begin":110,"end":226},"obj":"Sentence"},{"id":"T181","span":{"begin":227,"end":376},"obj":"Sentence"},{"id":"T182","span":{"begin":377,"end":610},"obj":"Sentence"},{"id":"T183","span":{"begin":611,"end":867},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Dual recognition of gangliosides and angiotensin-converting enzyme-2 (ACE-2) by SARS-CoV-2 spike (S) protein. The viral protein displays two distinct domains, the tips of which are available for distinct types of interactions. The receptor-binding domain binds to the ACE-2 receptor, and the N-terminal domain (NTD) binds to the ganglioside-rich domain of the plasma membrane. Lipid rafts, which are membrane domains enriched in gangliosides (in yellow) and cholesterol (in blue), provide a perfect attractive interface for adequately positioning the viral S protein at the first step of the infection process. These structural and molecular modelling studies suggest that amino acid residues 111–162 of the NTD form a functional ganglioside-binding domain, the interaction of which with lipid rafts can be efficiently prevented by chloroquine and hydroxychloroquine."}