> top > docs > PMC:7128678 > spans > 19204-19819 > annotations

PMC:7128678 / 19204-19819 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
525 71-76 Gene denotes spike Gene:43740568
526 60-70 Species denotes SARS‐CoV‐2 Tax:2697049
527 101-104 Chemical denotes GM1 MESH:D005677

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T423 60-70 SP_7 denotes SARS‐CoV‐2
T424 105-114 CHEBI:36357;CHEBI:36357 denotes molecules

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T111 38-48 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T112 77-84 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T113 116-126 Body_part denotes Amino acid http://purl.org/sig/ont/fma/fma82739

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T73 60-64 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T140 38-56 http://purl.obolibrary.org/obo/CHEBI_33708 denotes amino acid residue
T141 38-56 http://purl.obolibrary.org/obo/PR_000036907 denotes amino acid residue
T142 116-135 http://purl.obolibrary.org/obo/CHEBI_33708 denotes Amino acid residues
T143 116-135 http://purl.obolibrary.org/obo/PR_000036907 denotes Amino acid residues
T144 332-335 http://purl.obolibrary.org/obo/CLO_0001002 denotes 162
T145 593-596 http://purl.obolibrary.org/obo/CLO_0001002 denotes 162

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T394 38-56 Chemical denotes amino acid residue http://purl.obolibrary.org/obo/CHEBI_33708
T395 38-48 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T396 38-43 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T397 44-48 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T398 77-84 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T399 101-104 Chemical denotes GM1 http://purl.obolibrary.org/obo/CHEBI_18216|http://purl.obolibrary.org/obo/CHEBI_61048|http://purl.obolibrary.org/obo/CHEBI_73110
T402 105-114 Chemical denotes molecules http://purl.obolibrary.org/obo/CHEBI_25367
T403 116-126 Chemical denotes Amino acid http://purl.obolibrary.org/obo/CHEBI_33704
T404 122-126 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T405 185-188 Chemical denotes GM1 http://purl.obolibrary.org/obo/CHEBI_18216|http://purl.obolibrary.org/obo/CHEBI_61048|http://purl.obolibrary.org/obo/CHEBI_73110
T408 189-197 Chemical denotes molecule http://purl.obolibrary.org/obo/CHEBI_25367
T409 199-202 Chemical denotes Asp http://purl.obolibrary.org/obo/CHEBI_17053|http://purl.obolibrary.org/obo/CHEBI_22660|http://purl.obolibrary.org/obo/CHEBI_29958
T412 213-216 Chemical denotes Lys http://purl.obolibrary.org/obo/CHEBI_133538|http://purl.obolibrary.org/obo/CHEBI_18019|http://purl.obolibrary.org/obo/CHEBI_29967
T415 227-230 Chemical denotes Gln http://purl.obolibrary.org/obo/CHEBI_30011
T416 241-244 Chemical denotes Phe http://purl.obolibrary.org/obo/CHEBI_17295|http://purl.obolibrary.org/obo/CHEBI_29997
T418 256-259 Chemical denotes Cys http://purl.obolibrary.org/obo/CHEBI_15356|http://purl.obolibrary.org/obo/CHEBI_17561|http://purl.obolibrary.org/obo/CHEBI_29950
T421 270-273 Chemical denotes Asn http://purl.obolibrary.org/obo/CHEBI_17196|http://purl.obolibrary.org/obo/CHEBI_22653|http://purl.obolibrary.org/obo/CHEBI_50347
T424 285-288 Chemical denotes Asp http://purl.obolibrary.org/obo/CHEBI_17053|http://purl.obolibrary.org/obo/CHEBI_22660|http://purl.obolibrary.org/obo/CHEBI_29958
T427 299-302 Chemical denotes Arg http://purl.obolibrary.org/obo/CHEBI_16467|http://purl.obolibrary.org/obo/CHEBI_29952
T429 314-317 Chemical denotes Ser http://purl.obolibrary.org/obo/CHEBI_17115|http://purl.obolibrary.org/obo/CHEBI_29999
T431 328-331 Chemical denotes Ser http://purl.obolibrary.org/obo/CHEBI_17115|http://purl.obolibrary.org/obo/CHEBI_29999
T433 372-375 Chemical denotes GM1 http://purl.obolibrary.org/obo/CHEBI_18216|http://purl.obolibrary.org/obo/CHEBI_61048|http://purl.obolibrary.org/obo/CHEBI_73110
T436 376-385 Chemical denotes molecules http://purl.obolibrary.org/obo/CHEBI_25367
T437 387-390 Chemical denotes Asp http://purl.obolibrary.org/obo/CHEBI_17053|http://purl.obolibrary.org/obo/CHEBI_22660|http://purl.obolibrary.org/obo/CHEBI_29958
T440 402-405 Chemical denotes Ser http://purl.obolibrary.org/obo/CHEBI_17115|http://purl.obolibrary.org/obo/CHEBI_29999
T442 417-420 Chemical denotes Lys http://purl.obolibrary.org/obo/CHEBI_133538|http://purl.obolibrary.org/obo/CHEBI_18019|http://purl.obolibrary.org/obo/CHEBI_29967
T445 431-434 Chemical denotes Gln http://purl.obolibrary.org/obo/CHEBI_30011
T446 446-449 Chemical denotes Phe http://purl.obolibrary.org/obo/CHEBI_17295|http://purl.obolibrary.org/obo/CHEBI_29997
T448 461-464 Chemical denotes Cys http://purl.obolibrary.org/obo/CHEBI_15356|http://purl.obolibrary.org/obo/CHEBI_17561|http://purl.obolibrary.org/obo/CHEBI_29950
T451 475-478 Chemical denotes Asn http://purl.obolibrary.org/obo/CHEBI_17196|http://purl.obolibrary.org/obo/CHEBI_22653|http://purl.obolibrary.org/obo/CHEBI_50347
T454 489-492 Chemical denotes Phe http://purl.obolibrary.org/obo/CHEBI_17295|http://purl.obolibrary.org/obo/CHEBI_29997
T456 503-506 Chemical denotes Gly http://purl.obolibrary.org/obo/CHEBI_15428
T457 517-520 Chemical denotes Glu http://purl.obolibrary.org/obo/CHEBI_16015|http://purl.obolibrary.org/obo/CHEBI_18237|http://purl.obolibrary.org/obo/CHEBI_29972
T460 531-534 Chemical denotes Phe http://purl.obolibrary.org/obo/CHEBI_17295|http://purl.obolibrary.org/obo/CHEBI_29997
T462 546-549 Chemical denotes Arg http://purl.obolibrary.org/obo/CHEBI_16467|http://purl.obolibrary.org/obo/CHEBI_29952
T464 561-564 Chemical denotes Tyr http://purl.obolibrary.org/obo/CHEBI_17895|http://purl.obolibrary.org/obo/CHEBI_18186|http://purl.obolibrary.org/obo/CHEBI_46858
T467 575-578 Chemical denotes Ser http://purl.obolibrary.org/obo/CHEBI_17115|http://purl.obolibrary.org/obo/CHEBI_29999
T469 589-592 Chemical denotes Ser http://purl.obolibrary.org/obo/CHEBI_17115|http://purl.obolibrary.org/obo/CHEBI_29999

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T21 101-104 GlycoEpitope denotes GM1 http://www.glycoepitope.jp/epitopes/EP0050
T22 185-188 GlycoEpitope denotes GM1 http://www.glycoepitope.jp/epitopes/EP0050
T23 372-375 GlycoEpitope denotes GM1 http://www.glycoepitope.jp/epitopes/EP0050

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T137 0-115 Sentence denotes Table 1 Energy of interaction of each amino acid residue of SARS‐CoV‐2 spike protein in contact with GM1 molecules.
T138 116-168 Sentence denotes Amino acid residues Energy of interaction (kJ.mol‐1)
T139 169-197 Sentence denotes First step: one GM1 molecule
T140 198-211 Sentence denotes  Asp‐111 −5.6
T141 212-225 Sentence denotes  Lys‐113 −8.2
T142 226-239 Sentence denotes  Gln‐134 −8.6
T143 240-254 Sentence denotes  Phe‐135 −20.1
T144 255-268 Sentence denotes  Cys‐136 −7.0
T145 269-283 Sentence denotes  Asn‐137 −15.2
T146 284-297 Sentence denotes  Asp‐138 −6.4
T147 298-312 Sentence denotes  Arg‐158 −17.4
T148 313-326 Sentence denotes  Ser‐161 −9.7
T149 327-340 Sentence denotes  Ser‐162 −2.0
T150 341-354 Sentence denotes  Total −100.2
T151 355-385 Sentence denotes Second step: two GM1 molecules
T152 386-400 Sentence denotes  Asp‐111 −15.8
T153 401-415 Sentence denotes  Ser‐112 −10.7
T154 416-429 Sentence denotes  Lys‐113 −9.2
T155 430-444 Sentence denotes  Gln‐134 −11.2
T156 445-459 Sentence denotes  Phe‐135 −10.5
T157 460-473 Sentence denotes  Cys‐136 −6.2
T158 474-487 Sentence denotes  Asn‐137 −4.7
T159 488-501 Sentence denotes  Phe‐140 −5.2
T160 502-515 Sentence denotes  Gly‐142 −5.6
T161 516-529 Sentence denotes  Glu‐156 −9.0
T162 530-544 Sentence denotes  Phe‐157 −13.8
T163 545-559 Sentence denotes  Arg‐158 −19.8
T164 560-573 Sentence denotes  Tyr‐160 −3.2
T165 574-587 Sentence denotes  Ser‐161 −9.7
T166 588-601 Sentence denotes  Ser‐162 −2.0
T167 602-615 Sentence denotes  Total −136.6