PMC:7128678 / 14958-15650
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 459 | 377-378 | Gene | denotes | S | Gene:43740568 |
| 460 | 306-307 | Gene | denotes | S | Gene:43740568 |
| 461 | 202-203 | Gene | denotes | S | Gene:43740568 |
| 462 | 93-94 | Gene | denotes | S | Gene:43740568 |
| 463 | 34-44 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 464 | 45-50 | Gene | denotes | spike | Gene:43740568 |
| 465 | 665-676 | Chemical | denotes | ganglioside | MESH:D005732 |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T331 | 34-44 | SP_7 | denotes | SARS-CoV-2 |
| T332 | 93-102 | PG_1 | denotes | S protein |
| T333 | 202-211 | PG_1 | denotes | S protein |
| T334 | 227-234 | SO:0001117 | denotes | α-helix |
| T335 | 306-315 | PG_1 | denotes | S protein |
| T336 | 377-386 | PG_1 | denotes | S protein |
| T337 | 415-421 | SO:0000417 | denotes | domain |
| T338 | 442-451 | PG_1 | denotes | S protein |
| T339 | 665-676 | CHEBI:28892;CHEBI:28892 | denotes | ganglioside |
| T340 | 685-691 | SO:0000417 | denotes | domain |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T70 | 55-62 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T71 | 95-102 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T72 | 204-211 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T73 | 229-234 | Body_part | denotes | helix | http://purl.org/sig/ont/fma/fma60992 |
| T74 | 308-315 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T75 | 379-386 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T76 | 444-451 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T77 | 601-611 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
| T78 | 665-676 | Body_part | denotes | ganglioside | http://purl.org/sig/ont/fma/fma82816 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T7 | 229-234 | Body_part | denotes | helix | http://purl.obolibrary.org/obo/UBERON_0002488 |
| T8 | 274-291 | Body_part | denotes | Surface structure | http://purl.obolibrary.org/obo/UBERON_0003102 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T34 | 34-42 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T35 | 423-426 | Disease | denotes | NTD | http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075 |
| T37 | 488-491 | Disease | denotes | NTD | http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075 |
| T39 | 628-631 | Disease | denotes | NTD | http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T99 | 65-66 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T100 | 103-106 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T101 | 107-108 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T102 | 167-168 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | b |
| T103 | 478-479 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T104 | 601-620 | http://purl.obolibrary.org/obo/CHEBI_33708 | denotes | amino acid residues |
| T105 | 601-620 | http://purl.obolibrary.org/obo/PR_000036907 | denotes | amino acid residues |
| T106 | 653-654 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T281 | 55-62 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T282 | 95-102 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T283 | 204-211 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T284 | 308-315 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T285 | 379-386 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T286 | 444-451 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T287 | 601-611 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
| T288 | 601-606 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T289 | 607-611 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T290 | 665-676 | Chemical | denotes | ganglioside | http://purl.obolibrary.org/obo/CHEBI_28892 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T109 | 0-692 | Sentence | denotes | Fig. 5 Structural features of the SARS-CoV-2 spike (S) protein. (a) Trimeric structure (each S protein has a distinct surface colour, ‘blue’, ‘yellow’ and ‘purple’). (b) Ribbon representation of ‘blue’ S protein in the trimer (α-helix, red; β-strand, blue; coil, grey). (c) Surface structure of the ‘blue’ S protein isolated from the trimer. (d) Ribbon structure of the ‘blue’ S protein. (e) Zoom on the N-terminal domain (NTD) of the ‘blue’ S protein. (f,g) Molecular model of a minimal NTD obtained with Hyperchem [ribbon in representation in (f), surface rendering in (g)]. (h) Highlighting of the amino acid residues of the NTD that could belong to a potential ganglioside-binding domain. |