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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 735-740 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T2 1858-1861 Body_part denotes map http://purl.org/sig/ont/fma/fma67847
T3 1921-1924 Body_part denotes map http://purl.org/sig/ont/fma/fma67847
T4 2488-2495 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T5 2718-2724 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T6 3700-3703 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T7 3714-3717 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T8 4481-4488 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T9 4557-4564 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T10 4577-4584 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T11 4698-4709 Body_part denotes amino acids http://purl.org/sig/ont/fma/fma82739
T12 4759-4766 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T13 4995-5001 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T14 5185-5195 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T15 5238-5245 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T16 5454-5458 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T17 5606-5616 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T18 5875-5879 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T19 8178-8186 Body_part denotes Appendix http://purl.org/sig/ont/fma/fma14542

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 539-544 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542
T2 5150-5155 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542

LitCovid_AGAC

Id Subject Object Predicate Lexical cue
p85051s25 5837-5844 MPA denotes binding

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 168-172 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T2 337-370 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T3 384-392 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T4 913-922 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T5 1600-1609 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T6 2560-2564 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T7 2935-2944 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T8 4163-4172 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T9 5484-5492 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T10 5568-5576 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T11 5786-5794 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T12 6982-6996 Disease denotes acute diarrhea http://purl.obolibrary.org/obo/MONDO_0000257
T13 6988-6996 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T14 7488-7498 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 57-62 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T2 234-240 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T3 266-271 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T4 516-521 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T5 531-532 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T6 565-566 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T7 567-572 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T8 614-619 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T9 735-740 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T10 815-827 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T11 859-860 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T12 877-882 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T13 1180-1185 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T14 1189-1194 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T15 1208-1213 http://purl.obolibrary.org/obo/CLO_0001302 denotes 3 , 4
T16 1274-1275 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T17 1355-1356 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 1450-1455 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T19 1507-1508 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T20 1519-1520 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T21 1594-1599 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T22 1707-1719 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T23 2050-2055 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T24 2095-2096 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T25 2388-2393 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T26 2698-2700 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T27 2841-2848 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T28 2909-2910 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T29 2929-2934 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T30 3175-3177 http://purl.obolibrary.org/obo/CLO_0003414 denotes G2
T31 3400-3407 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T32 3658-3659 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T33 3783-3785 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T34 3815-3820 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T35 3943-3945 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T36 3943-3945 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T37 4173-4174 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T38 4175-4182 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T39 4362-4368 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T40 4436-4437 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T41 4820-4821 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T42 4823-4824 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T43 4912-4918 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T44 5065-5070 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T45 5276-5284 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T46 5454-5458 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T47 5854-5858 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes Bats
T48 5867-5868 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T49 5875-5879 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T50 5969-5973 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T51 5985-5986 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T52 6041-6047 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T53 6113-6116 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T54 6200-6204 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T55 6261-6262 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T56 6295-6301 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T57 6344-6350 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T58 6647-6651 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T59 6655-6661 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T60 6681-6682 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T61 6695-6696 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T62 6787-6793 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T63 6955-6961 http://purl.obolibrary.org/obo/NCBITaxon_9837 denotes camels
T64 6965-6971 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T65 7015-7018 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T66 7110-7117 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T67 7230-7237 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T68 7323-7329 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T69 7342-7349 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T70 7354-7358 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T71 7383-7384 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T72 7427-7434 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T73 7511-7517 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T74 7575-7581 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T75 7619-7625 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T76 7742-7749 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T77 7783-7789 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T78 7799-7805 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T79 7833-7840 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T80 8012-8013 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T81 8267-8272 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T82 8598-8602 http://purl.obolibrary.org/obo/CLO_0002199 denotes CARS
T83 8603-8605 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T84 8692-8696 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 2555-2559 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T2 2701-2703 Chemical denotes S3 http://purl.obolibrary.org/obo/CHEBI_29388
T3 3187-3189 Chemical denotes G4 http://purl.obolibrary.org/obo/CHEBI_50653
T4 3943-3945 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T5 4481-4488 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T6 4557-4564 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T7 4577-4584 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T8 4698-4709 Chemical denotes amino acids http://purl.obolibrary.org/obo/CHEBI_33709
T9 4698-4703 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T10 4704-4709 Chemical denotes acids http://purl.obolibrary.org/obo/CHEBI_37527
T11 4759-4766 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T12 5025-5029 Chemical denotes MEGA http://purl.obolibrary.org/obo/CHEBI_6617
T13 5185-5195 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T14 5238-5245 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T15 5606-5616 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T16 5606-5611 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T17 5612-5616 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T18 6393-6396 Chemical denotes cat http://purl.obolibrary.org/obo/CHEBI_32402
T19 6488-6490 Chemical denotes S4 http://purl.obolibrary.org/obo/CHEBI_29401
T20 7149-7157 Chemical denotes medicine http://purl.obolibrary.org/obo/CHEBI_23888

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 696-705 http://purl.obolibrary.org/obo/GO_0007585 denotes breathing
T2 5276-5291 http://purl.obolibrary.org/obo/GO_0061025 denotes membrane fusion
T3 5361-5368 http://purl.obolibrary.org/obo/GO_0009606 denotes tropism
T4 5903-5911 http://purl.obolibrary.org/obo/GO_0015297 denotes exchange
T5 7966-7974 http://purl.obolibrary.org/obo/GO_0015297 denotes exchange

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-74 Sentence denotes The continuous evolution and dissemination of 2019 novel human coronavirus
T2 76-88 Sentence denotes Dear Editor,
T3 89-741 Sentence denotes Recently, Wang and colleagues reported in this journal the new threat of novel SARS-like coronavirus in China.1 During the last several decades, humans had been affected by six human coronaviruses (HCoV)—HCoV-NL63, HCoV-HKU1, HCoV-229E, HCoV-OC43, severe acute respiratory syndrome coronavirus (SARS-CoV), and Middle East respiratory syndrome coronavirus (MERS-CoV)—the last two of which caused severe respiratory symptoms and human death on a globe scale.2 On December 2019, a human case in Wuhan, China infected with novel human coronavirus (HCoV) was first reported, who exhibited fever, difficulty with breathing, and invasive lesions in the lungs.
T4 742-834 Sentence denotes This novel HCoV was subsequently designated as 2019-nCoV by World Health Organization (WHO).
T5 835-1107 Sentence denotes As of 4, February 2020, a total of 20,520 human cases (of which 426 fatal) of pneumonia infected with the 2019-nCoV had been demonstrated in all of the provinces of China (Fig. 1 ), with fatality rate of ∼5% in Wuhan and ∼0.8% in the rest of cities of China, respectively.
T6 1108-1383 Sentence denotes Strikingly, the 2019-nCoV had caused family case clusters and sustained human-to-human transmission.3 , 4 On January 30, 2020, WHO declared the 2019-nCoV epidemic as a Public Health Emergency of International Concern (https://www.who.int), posing a new public health concern.
T7 1384-1462 Sentence denotes Fig. 1 Geographic distribution of the 2019-nCoV and the number of human cases.
T8 1463-1545 Sentence denotes Geographic distribution of the 2019-nCoV in(A)China and(B)the world, respectively.
T9 1546-1610 Sentence denotes The color of bar chart represents the number of human infection.
T10 1611-1665 Sentence denotes The blue star represents the location of Wuhan, China.
T11 1666-1853 Sentence denotes Data are available from the World Health Organization (https://www.who.int) and National Health and Family Planning Commission of the People's Republic of China (http://www.nhfpc.gov.cn).
T12 1854-1916 Sentence denotes The map in the inset indicates islands in the South China Sea.
T13 1917-2124 Sentence denotes The map was designed using ArcGIS Desktop 10.4 software (http://www.esri.com/software/arcgis/arcgis-for-desktop/). (C) The number of human cases by date are plotted, which shows a gradual increase over time.
T14 2125-2304 Sentence denotes The blue bar chart represents the numbers of confirmed cases, and the gray bar chart represents the death toll, and the yellow bar chart represents the numbers of recovered cases.
T15 2305-2469 Sentence denotes The emergence of novel 2019-nCoV highlights the necessity of tracing the origin of virus and the updated prevention and control systems in order to avert outbreaks.
T16 2470-2705 Sentence denotes We found that the genomes of the novel 2019-nCoV were genetically closely related to beta SARS-related CoV (SARSr-CoV) circulating in China and had undergone genetic recombination with SARSr-CoV (Fig. 2 and Supplementary Figure S1-S3).
T17 2706-2793 Sentence denotes The overall genome identity of the 2019-nCoV and SARSr-CoV was ranging from 82% to 89%.
T18 2794-2991 Sentence denotes With rapid dissemination of the 2019-nCoV, the viruses had been transmitted rapidly in more than 25 countries, and a steep increase in human infection with the 2019-nCoV occurred in China (Fig. 1).
T19 2992-3190 Sentence denotes To further explore the genetic evolution of the 2019-nCoV, phylogenic relationships of 31 isolates examined in this study were explored and divided into four genotypes, including G1, G2, G3, and G4.
T20 3191-3408 Sentence denotes We found that 25 isolates clustered together and had been circulating in Thailand and multiple provinces (e.g. Taiwan, Guangdong, Zhejiang, and Hubei) of China, suggestive of the ongoing co-circulation of the viruses.
T21 3409-3497 Sentence denotes The 2019-nCoV circulating in USA and Wuhan, China clustered into an independent cluster.
T22 3498-3674 Sentence denotes However, interestingly, the SZTH-002, 20SF013, and SZTH-001 strains in Guangdong province were located at basal branch of the 2019-nCoV (Fig. 2), indicative of a single origin.
T23 3675-3787 Sentence denotes The genetic diversity of RNA-dependent RNA polymerase of the 2019-nCoV was very small (Supplementary Figure S1).
T24 3788-3947 Sentence denotes By contrast, the Spike (S) genes of some 2019-nCoV prevailing in Guangdong province were found at the root of the 2019-nCoV in Wuhan (Supplementary Figure S2).
T25 3948-4122 Sentence denotes These findings indicated that the 2019-nCoV were infected from different regions in Wuhan and had been undergoing continuous evolution and dissemination in different regions.
T26 4123-4248 Sentence denotes Compared with the rapid mutation of the influenza A viruses, the degree of diversification of the 2019-nCoV was much smaller.
T27 4249-4388 Sentence denotes Nevertheless, we cannot rule out if the 2019-nCoV continue evolving to become more transmissible and virulent in humans in the near future.
T28 4389-4512 Sentence denotes Fig. 2 Evolutionary history of the 2019-nCoV. (A) Structural analysis of envelope spike (S) protein of novel coronaviruses.
T29 4513-4601 Sentence denotes The red and blue regions indicate the spike protein 1 and spike protein 2, respectively.
T30 4602-4676 Sentence denotes The wathet blue region indicates the receptor binding region of 2019-nCoV.
T31 4677-5040 Sentence denotes The correspondencing amino acids to the three-dimensional (3D) structure of the S protein were mapped using MacPymol (http://www.pymol.org/). (B) A simple model of 2019-nCoV origin inferred from phylogenic tree and clinical feature of humans infected with the 2019-nCoV. (C) Maximum likelihood tree of the full-length genome of coronaviruses using MEGA 7 version.
T32 5041-5145 Sentence denotes Red color indicates the human-origin coronaviruses, and red dot represents the isolates in Wuhan, China.
T33 5146-5231 Sentence denotes The scale bar represents the number of nucleotide substitutions per site (subs/site).
T34 5232-5853 Sentence denotes The S protein mediates receptor binding and membrane fusion, and of particular note, it is of great importance to determine host tropism and transmission capacity.5 Zhou et al. demonstrated that the 2019-nCoV use the same cell entry receptor, ACE2, as SARS-CoV.6 The receptor binding region of the 2019-nCoV was more similar to that of SARS-CoV; however, we found that four amino acid substitutions in the receptor binding region of the 2019-nCoV, including S486Q, F485Y, N493G, and Y501V substitutions (2019-nCoV numbering), were different from that of SARS-CoV (Fig. 2), which might affect the receptor binding ability.
T35 5854-6059 Sentence denotes Bats provide a rich “gene pool” for interspecies exchange of genetic fragments of CoV.7 Continuous surveillance in bats provide us a clue to the correlation between the 2019-nCoV and the animal origin CoV.
T36 6060-6205 Sentence denotes Despite the shared cluster between the 2019-nCoV and bat SARSr-CoV, we cannot infer that the reservoir of the 2019-nCoV was originated from bats.
T37 6206-6671 Sentence denotes Most of the patients infected with novel 2019-nCoV had a history to the seafood and live animal markets, and the vendor used to sale wild animal species, including marmot, snake, leopard cat, bamboo rat, badger, and hedgehog in Huanan seafood wholesale market (Supplementary Figure S4), all of which were susceptible to the novel CoV in nature, indicating that it remains likely there was intermediate hosts in the transmission cascade from bats to humans (Fig. 2).
T38 6672-6838 Sentence denotes However, a question of a public health interest is which intermediate hosts harbor the 2019-nCoV that could infect humans, which should be examined in greater detail.
T39 6839-7350 Sentence denotes Recently, the continuous interspecies transmission events of CoV occurred, including the emergence of MERS-CoV from camels to humans and swine acute diarrhea syndrome CoV from bat to swine, posing serious threats to public health.8 , 9 With the tradition of feeding wild animals for food or use in traditional medicine in China, wild birds, mammals, and reptiles carrying the novel zoonotic viruses flowed frequently in trading center, which had considerable potential to transmit to humans of emerging viruses.
T40 7351-7683 Sentence denotes In 2018, China had participated a Global Virome Project to identify unknown viruses from wildlife to better prepare for the epidemics of infectious diseases in humans.10 With multiple species of CoV circulating in different animal species that could be transmitted to humans, no one knows when or where the next outbreak will occur.
T41 7684-7877 Sentence denotes Nevertheless, decreasing the risk for the spread of novel viruses including reducing contact among humans and wild animal species and stopping novel viruses at their origins is urgently needed.
T42 7878-8076 Sentence denotes We call upon wildlife biologists, ecologists, doctors, and veterinarians should promote exchange and share data across disciplines as a mean to minimize the potential for pandemics of the 2019-nCoV.
T43 8078-8111 Sentence denotes Declaration of Competing Interest
T44 8112-8176 Sentence denotes All authors have no potential conflicts of interest to disclose.
T45 8178-8211 Sentence denotes Appendix Supplementary materials
T46 8213-8228 Sentence denotes Acknowledgement
T47 8229-8319 Sentence denotes We sincerely thank the authors of the human 2019 coronavirus from GISAID EpiFlu™ Database.
T48 8320-8790 Sentence denotes This work was supported by the 10.13039/501100001809National Natural Science Foundation of China (31941014, 31830097, 31672586), Key 10.13039/100006190Research and Development Program of Guangdong Province (2019B020218004), Earmarked Fund for China Agriculture Research System (CARS-41-G16), Guangdong Province Universities and Colleges Pearl River Scholar Funded Scheme (2018, Wenbao Qi), and Young Scholars of Yangtze River Scholar Professor Program (2019, Wenbao Qi).
T49 8791-8887 Sentence denotes Supplementary material associated with this article can be found, in the online version, at doi:
T50 8888-8915 Sentence denotes 10.1016/j.jinf.2020.02.001.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 673-678 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T2 680-705 Phenotype denotes difficulty with breathing http://purl.obolibrary.org/obo/HP_0002098
T3 913-922 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T4 6988-6996 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id tao:has_standard_notation
8 1422-1431 Species denotes 2019-nCoV Tax:2697049
9 1450-1455 Species denotes human Tax:9606
10 1494-1503 Species denotes 2019-nCoV Tax:2697049
11 1594-1599 Species denotes human Tax:9606
12 1800-1806 Species denotes People Tax:9606
13 2050-2055 Species denotes human Tax:9606
14 1600-1609 Disease denotes infection MESH:D007239
15 2225-2230 Disease denotes death MESH:D003643
45 168-189 Species denotes SARS-like coronavirus Tax:694009
46 234-240 Species denotes humans Tax:9606
47 266-271 Species denotes human Tax:9606
48 272-285 Species denotes coronaviruses Tax:11118
49 293-302 Species denotes HCoV-NL63 Tax:277944
50 304-313 Species denotes HCoV-HKU1 Tax:290028
51 315-324 Species denotes HCoV-229E Tax:11137
52 326-335 Species denotes HCoV-OC43 Tax:31631
53 337-382 Species denotes severe acute respiratory syndrome coronavirus Tax:694009
54 384-392 Species denotes SARS-CoV Tax:694009
55 399-454 Species denotes Middle East respiratory syndrome coronavirus (MERS-CoV) Tax:1335626
56 516-521 Species denotes human Tax:9606
57 567-572 Species denotes human Tax:9606
58 614-631 Species denotes human coronavirus Tax:694448
59 789-798 Species denotes 2019-nCoV Tax:2697049
60 877-882 Species denotes human Tax:9606
61 941-950 Species denotes 2019-nCoV Tax:2697049
62 1124-1133 Species denotes 2019-nCoV Tax:2697049
63 1180-1185 Species denotes human Tax:9606
64 1189-1194 Species denotes human Tax:9606
65 1252-1261 Species denotes 2019-nCoV Tax:2697049
66 287-291 Species denotes HCoV Tax:694448
67 633-637 Species denotes HCoV Tax:694448
68 753-757 Species denotes HCoV Tax:694448
69 491-511 Disease denotes respiratory symptoms MESH:D012818
70 522-527 Disease denotes death MESH:D003643
71 594-602 Disease denotes infected MESH:D007239
72 673-678 Disease denotes fever MESH:D005334
73 913-931 Disease denotes pneumonia infected MESH:D011014
89 4471-4476 Gene denotes spike Gene:43740568
90 4478-4479 Gene denotes S Gene:43740568
91 4551-4586 Gene denotes spike protein 1 and spike protein 2
92 4424-4433 Species denotes 2019-nCoV Tax:2697049
93 4492-4511 Species denotes novel coronaviruses Tax:2697049
94 4666-4675 Species denotes 2019-nCoV Tax:2697049
95 4841-4850 Species denotes 2019-nCoV Tax:2697049
96 4912-4918 Species denotes humans Tax:9606
97 4937-4946 Species denotes 2019-nCoV Tax:2697049
98 4949-4959 Species denotes C) Maximum Tax:13423
99 5005-5018 Species denotes coronaviruses Tax:11118
100 5065-5070 Species denotes human Tax:9606
101 5078-5091 Species denotes coronaviruses Tax:11118
102 4606-4617 Chemical denotes wathet blue
103 4919-4927 Disease denotes infected MESH:D007239
128 3805-3810 Gene denotes Spike Gene:43740568
129 3812-3813 Gene denotes S Gene:43740568
130 2328-2337 Species denotes 2019-nCoV Tax:2697049
131 2509-2518 Species denotes 2019-nCoV Tax:2697049
132 2560-2576 Species denotes SARS-related CoV Tax:694009
133 2578-2587 Species denotes SARSr-CoV Tax:694009
134 2655-2664 Species denotes SARSr-CoV Tax:694009
135 2741-2750 Species denotes 2019-nCoV Tax:2697049
136 2755-2764 Species denotes SARSr-CoV Tax:694009
137 2826-2835 Species denotes 2019-nCoV Tax:2697049
138 2929-2934 Species denotes human Tax:9606
139 2954-2963 Species denotes 2019-nCoV Tax:2697049
140 3040-3049 Species denotes 2019-nCoV Tax:2697049
141 3413-3422 Species denotes 2019-nCoV Tax:2697049
142 3624-3633 Species denotes 2019-nCoV Tax:2697049
143 3736-3745 Species denotes 2019-nCoV Tax:2697049
144 3829-3838 Species denotes 2019-nCoV Tax:2697049
145 3902-3911 Species denotes 2019-nCoV Tax:2697049
146 3982-3991 Species denotes 2019-nCoV Tax:2697049
147 4221-4230 Species denotes 2019-nCoV Tax:2697049
148 4289-4298 Species denotes 2019-nCoV Tax:2697049
149 4362-4368 Species denotes humans Tax:9606
150 2935-2944 Disease denotes infection MESH:D007239
151 3997-4005 Disease denotes infected MESH:D007239
164 5475-5479 Gene denotes ACE2 Gene:59272
165 5431-5440 Species denotes 2019-nCoV Tax:2697049
166 5484-5492 Species denotes SARS-CoV Tax:694009
167 5530-5539 Species denotes 2019-nCoV Tax:2697049
168 5568-5576 Species denotes SARS-CoV Tax:694009
169 5669-5678 Species denotes 2019-nCoV Tax:2697049
170 5736-5745 Species denotes 2019-nCoV Tax:2697049
171 5786-5794 Species denotes SARS-CoV Tax:694009
172 5690-5695 Mutation denotes S486Q p.S486Q
173 5697-5702 Mutation denotes F485Y p.F485Y
174 5704-5709 Mutation denotes N493G p.N493G
175 5715-5720 Mutation denotes Y501V p.Y501V
201 5936-5939 Species denotes CoV Tax:11118
202 6023-6032 Species denotes 2019-nCoV Tax:2697049
203 6055-6058 Species denotes CoV Tax:11118
204 6099-6108 Species denotes 2019-nCoV Tax:2697049
205 6117-6126 Species denotes SARSr-CoV Tax:694009
206 6170-6179 Species denotes 2019-nCoV Tax:2697049
207 6218-6226 Species denotes patients Tax:9606
208 6247-6256 Species denotes 2019-nCoV Tax:2697049
209 6385-6396 Species denotes leopard cat Tax:37029
210 6405-6408 Species denotes rat Tax:10116
211 6530-6539 Species denotes novel CoV Tax:2697049
212 6655-6661 Species denotes humans Tax:9606
213 6759-6768 Species denotes 2019-nCoV Tax:2697049
214 6787-6793 Species denotes humans Tax:9606
215 6900-6903 Species denotes CoV Tax:11118
216 6941-6949 Species denotes MERS-CoV Tax:1335626
217 6955-6961 Species denotes camels Tax:9837
218 6965-6971 Species denotes humans Tax:9606
219 6976-6981 Species denotes swine Tax:9823
220 7006-7009 Species denotes CoV Tax:11118
221 7022-7027 Species denotes swine Tax:9823
222 7323-7329 Species denotes humans Tax:9606
223 6227-6235 Disease denotes infected MESH:D007239
224 6988-6996 Disease denotes diarrhea MESH:D003967
225 7221-7229 Disease denotes zoonotic MESH:D015047
232 7511-7517 Species denotes humans Tax:9606
233 7546-7549 Species denotes CoV Tax:11118
234 7619-7625 Species denotes humans Tax:9606
235 7783-7789 Species denotes humans Tax:9606
236 8066-8075 Species denotes 2019-nCoV Tax:2697049
237 7488-7507 Disease denotes infectious diseases MESH:D003141