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PMC:7127067 / 8024-9271 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T10 188-193 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T11 324-347 Body_part denotes upper respiratory tract http://purl.org/sig/ont/fma/fma45661
T12 394-400 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T13 445-450 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T14 523-545 Body_part denotes upper lobe of the lung http://purl.org/sig/ont/fma/fma7334
T15 844-849 Body_part denotes urine http://purl.org/sig/ont/fma/fma12274
T16 1088-1093 Body_part denotes urine http://purl.org/sig/ont/fma/fma12274

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T8 188-193 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T9 324-347 Body_part denotes upper respiratory tract http://purl.obolibrary.org/obo/UBERON_0001557
T10 330-347 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T11 394-400 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T12 445-450 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T13 523-545 Body_part denotes upper lobe of the lung http://purl.obolibrary.org/obo/UBERON_0008948
T14 529-533 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T15 541-545 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T16 844-849 Body_part denotes urine http://purl.obolibrary.org/obo/UBERON_0001088
T17 1088-1093 Body_part denotes urine http://purl.obolibrary.org/obo/UBERON_0001088

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T71 76-84 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T72 217-225 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T73 389-400 Disease denotes sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T74 654-662 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T75 704-713 Disease denotes diarrhoea http://purl.obolibrary.org/obo/MONDO_0001673
T76 747-755 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T77 747-751 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T49 188-193 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T50 303-312 http://purl.obolibrary.org/obo/UBERON_0001005 denotes airway as
T51 445-450 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T52 541-545 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T53 541-545 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T54 715-716 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T55 828-832 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T56 869-870 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T3 785-787 Chemical denotes GI http://purl.obolibrary.org/obo/CHEBI_73907

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T60 0-207 Sentence denotes It is important to note that there are similarities in the symptoms between COVID-19 and earlier betacoronavirus such as fever, dry cough, dyspnea, and bilateral ground-glass opacities on chest CT scans [6].
T61 208-409 Sentence denotes However, COVID-19 showed some unique clinical features that include the targeting of the lower airway as evident by upper respiratory tract symptoms like rhinorrhoea, sneezing, and sore throat [15,16].
T62 410-609 Sentence denotes In addition, based on results from chest radiographs upon admission, some of the cases show an infiltrate in the upper lobe of the lung that is associated with increasing dyspnea with hypoxemia [17].
T63 610-797 Sentence denotes Importantly, whereas patients infected with COVID-19 developed gastrointestinal symptoms like diarrhoea, a low percentage of MERS-CoV or SARS-CoV patients experienced similar GI distress.
T64 798-988 Sentence denotes Therefore, it is important to test faecal and urine samples to exclude a potential alternative route of transmission, specifically through health care workers, patients etc (Fig. 2) [15,16].
T65 989-1247 Sentence denotes Therefore, development of methods to identify the various modes of transmission such as feacal and urine samples are urgently warranted in order to develop strategies to inhibit and/or minimize transmission and to develop therapeutics to control the disease.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T22 121-126 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T23 128-137 Phenotype denotes dry cough http://purl.obolibrary.org/obo/HP_0031246
T24 139-146 Phenotype denotes dyspnea http://purl.obolibrary.org/obo/HP_0002094
T25 389-400 Phenotype denotes sore throat http://purl.obolibrary.org/obo/HP_0033050
T26 581-588 Phenotype denotes dyspnea http://purl.obolibrary.org/obo/HP_0002094
T27 594-603 Phenotype denotes hypoxemia http://purl.obolibrary.org/obo/HP_0012418
T28 704-713 Phenotype denotes diarrhoea http://purl.obolibrary.org/obo/HP_0002014

2_test

Id Subject Object Predicate Lexical cue
32113704-23891402-131566396 402-404 23891402 denotes 15
32113704-23891402-131566396 402-404 23891402 denotes 15
32113704-12682352-131566397 405-407 12682352 denotes 16
32113704-12682352-131566397 405-407 12682352 denotes 16
32113704-23891402-131566398 981-983 23891402 denotes 15
32113704-23891402-131566398 981-983 23891402 denotes 15
32113704-12682352-131566399 984-986 12682352 denotes 16
32113704-12682352-131566399 984-986 12682352 denotes 16
32113704-31986264-55638562 204-205 31986264 denotes 6
32113704-31986264-55638562 204-205 31986264 denotes 6
32113704-23891402-55638563 402-404 23891402 denotes 15
32113704-23891402-55638563 402-404 23891402 denotes 15
32113704-12682352-55638564 405-407 12682352 denotes 16
32113704-12682352-55638564 405-407 12682352 denotes 16
32113704-23891402-55638565 981-983 23891402 denotes 15
32113704-23891402-55638565 981-983 23891402 denotes 15
32113704-12682352-55638566 984-986 12682352 denotes 16
32113704-12682352-55638566 984-986 12682352 denotes 16

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
288 97-112 Species denotes betacoronavirus Tax:694002
289 631-639 Species denotes patients Tax:9606
290 735-743 Species denotes MERS-CoV Tax:1335626
291 747-755 Species denotes SARS-CoV Tax:694009
292 756-764 Species denotes patients Tax:9606
293 958-966 Species denotes patients Tax:9606
294 76-84 Disease denotes COVID-19 MESH:C000657245
295 121-126 Disease denotes fever MESH:D005334
296 128-137 Disease denotes dry cough MESH:D003371
297 139-146 Disease denotes dyspnea MESH:D004417
298 217-225 Disease denotes COVID-19 MESH:C000657245
299 362-373 Disease denotes rhinorrhoea
300 389-400 Disease denotes sore throat MESH:D010608
301 581-588 Disease denotes dyspnea MESH:D004417
302 594-603 Disease denotes hypoxemia MESH:D000860
303 640-648 Disease denotes infected MESH:D007239
304 654-662 Disease denotes COVID-19 MESH:C000657245
305 673-698 Disease denotes gastrointestinal symptoms MESH:D012817
306 704-713 Disease denotes diarrhoea MESH:D003967
307 785-796 Disease denotes GI distress MESH:D012128