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PMC:7127067 / 6172-8023 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T3 291-304 Body_part denotes immune system http://purl.org/sig/ont/fma/fma9825
T4 509-515 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T5 632-637 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T6 953-958 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T7 1607-1630 Body_part denotes upper respiratory tract http://purl.org/sig/ont/fma/fma45661
T8 1677-1683 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T9 1741-1751 Body_part denotes intestinal http://purl.org/sig/ont/fma/fma7199

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T2 291-304 Body_part denotes immune system http://purl.obolibrary.org/obo/UBERON_0002405
T3 509-515 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T4 632-637 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T5 1607-1630 Body_part denotes upper respiratory tract http://purl.obolibrary.org/obo/UBERON_0001557
T6 1613-1630 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T7 1677-1683 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T47 16-24 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T48 25-34 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T49 130-138 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T50 432-440 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T51 551-560 Disease denotes diarrhoea http://purl.obolibrary.org/obo/MONDO_0001673
T52 576-587 Disease denotes lymphopenia http://purl.obolibrary.org/obo/MONDO_0003783
T53 659-668 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T54 726-761 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T55 732-761 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T56 777-783 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T57 1050-1062 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166
T58 1274-1295 Disease denotes respiratory disorders http://purl.obolibrary.org/obo/MONDO_0005087
T59 1306-1314 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T60 1315-1324 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T61 1351-1359 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T62 1360-1369 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T63 1452-1460 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T64 1500-1508 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T65 1672-1683 Disease denotes sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T66 1722-1730 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T67 1766-1775 Disease denotes diarrhoea http://purl.obolibrary.org/obo/MONDO_0001673
T68 1813-1821 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T69 1813-1817 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T70 1841-1850 Disease denotes diarrhoea http://purl.obolibrary.org/obo/MONDO_0001673

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T39 174-176 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T40 187-188 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T41 291-304 http://purl.obolibrary.org/obo/UBERON_0002405 denotes immune system
T42 630-631 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T43 632-637 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T44 953-958 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T45 1586-1595 http://purl.obolibrary.org/obo/UBERON_0001005 denotes airway as
T46 1741-1751 http://purl.obolibrary.org/obo/UBERON_0000160 denotes intestinal
T47 1741-1751 http://www.ebi.ac.uk/efo/EFO_0000834 denotes intestinal
T48 1781-1782 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T2 1106-1116 Chemical denotes interferon http://purl.obolibrary.org/obo/CHEBI_52999

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T4 1012-1027 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T5 1050-1062 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T47 0-100 Sentence denotes The symptoms of COVID-19 infection appear after an incubation period of approximately 5.2 days [12].
T48 101-211 Sentence denotes The period from the onset of COVID-19 symptoms to death ranged from 6 to 41 days with a median of 14 days [8].
T49 212-305 Sentence denotes This period is dependent on the age of the patient and status of the patient's immune system.
T50 306-394 Sentence denotes It was shorter among patients >70-years old compared with those under the age of 70 [8].
T51 395-599 Sentence denotes The most common symptoms at onset of COVID-19 illness are fever, cough, and fatigue, while other symptoms include sputum production, headache, haemoptysis, diarrhoea, dyspnoea, and lymphopenia [5,6,8,13].
T52 600-846 Sentence denotes Clinical features revealed by a chest CT scan presented as pneumonia, however, there were abnormal features such as RNAaemia, acute respiratory distress syndrome, acute cardiac injury, and incidence of grand-glass opacities that led to death [6].
T53 847-1063 Sentence denotes In some cases, the multiple peripheral ground-glass opacities were observed in subpleural regions of both lungs [14] that likely induced both systemic and localized immune response that led to increased inflammation.
T54 1064-1249 Sentence denotes Regrettably, treatment of some cases with interferon inhalation showed no clinical effect and instead appeared to worsen the condition by progressing pulmonary opacities [14] (Fig. 2 ).
T55 1250-1325 Sentence denotes Fig. 2 The systemic and respiratory disorders caused by COVID-19 infection.
T56 1326-1396 Sentence denotes The incubation period of COVID-19 infection is approximately 5.2 days.
T57 1397-1490 Sentence denotes There are general similarities in the symptoms between COVID-19 and previous betacoronavirus.
T58 1491-1684 Sentence denotes However, COVID-19 showed some unique clinical features that include the targeting of the lower airway as evident by upper respiratory tract symptoms like rhinorrhoea, sneezing, and sore throat.
T59 1685-1851 Sentence denotes Additionally, patients infected with COVID-19 developed intestinal symptoms like diarrhoea only a low percentage of MERS-CoV or SARS-CoV patients exhibited diarrhoea.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T8 453-458 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T9 460-465 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T10 471-478 Phenotype denotes fatigue http://purl.obolibrary.org/obo/HP_0012378
T11 528-536 Phenotype denotes headache http://purl.obolibrary.org/obo/HP_0002315
T12 538-549 Phenotype denotes haemoptysis http://purl.obolibrary.org/obo/HP_0002105
T13 551-560 Phenotype denotes diarrhoea http://purl.obolibrary.org/obo/HP_0002014
T14 562-570 Phenotype denotes dyspnoea http://purl.obolibrary.org/obo/HP_0002094
T15 576-587 Phenotype denotes lymphopenia http://purl.obolibrary.org/obo/HP_0001888
T16 659-668 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T17 732-752 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T18 1214-1233 Phenotype denotes pulmonary opacities http://purl.obolibrary.org/obo/HP_0031457
T19 1672-1683 Phenotype denotes sore throat http://purl.obolibrary.org/obo/HP_0033050
T20 1766-1775 Phenotype denotes diarrhoea http://purl.obolibrary.org/obo/HP_0002014
T21 1841-1850 Phenotype denotes diarrhoea http://purl.obolibrary.org/obo/HP_0002014

2_test

Id Subject Object Predicate Lexical cue
32113704-31994742-55638556 208-209 31994742 denotes 8
32113704-31994742-55638556 208-209 31994742 denotes 8
32113704-31994742-55638557 391-392 31994742 denotes 8
32113704-31994742-55638557 391-392 31994742 denotes 8
32113704-31986264-55638558 591-592 31986264 denotes 6
32113704-31986264-55638558 591-592 31986264 denotes 6
32113704-31994742-55638559 593-594 31994742 denotes 8
32113704-31994742-55638559 593-594 31994742 denotes 8
32113704-32004066-55638560 595-597 32004066 denotes 13
32113704-32004066-55638560 595-597 32004066 denotes 13
32113704-31986264-55638561 843-844 31986264 denotes 6
32113704-31986264-55638561 843-844 31986264 denotes 6

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
209 1474-1489 Species denotes betacoronavirus Tax:694002
210 1699-1707 Species denotes patients Tax:9606
211 1801-1809 Species denotes MERS-CoV Tax:1335626
212 1813-1821 Species denotes SARS-CoV Tax:694009
213 1822-1830 Species denotes patients Tax:9606
214 1274-1295 Disease denotes respiratory disorders MESH:D012131
215 1306-1314 Disease denotes COVID-19 MESH:C000657245
216 1315-1324 Disease denotes infection MESH:D007239
217 1351-1359 Disease denotes COVID-19 MESH:C000657245
218 1360-1369 Disease denotes infection MESH:D007239
219 1452-1460 Disease denotes COVID-19 MESH:C000657245
220 1500-1508 Disease denotes COVID-19 MESH:C000657245
221 1645-1656 Disease denotes rhinorrhoea
222 1672-1683 Disease denotes sore throat MESH:D010608
223 1708-1716 Disease denotes infected MESH:D007239
224 1722-1730 Disease denotes COVID-19 MESH:C000657245
225 1741-1751 Disease denotes intestinal MESH:D007410
226 1766-1775 Disease denotes diarrhoea MESH:D003967
227 1841-1850 Disease denotes diarrhoea MESH:D003967
248 255-262 Species denotes patient Tax:9606
249 281-288 Species denotes patient Tax:9606
250 327-335 Species denotes patients Tax:9606
251 16-24 Disease denotes COVID-19 MESH:C000657245
252 25-34 Disease denotes infection MESH:D007239
253 130-138 Disease denotes COVID-19 MESH:C000657245
254 151-156 Disease denotes death MESH:D003643
255 432-440 Disease denotes COVID-19 MESH:C000657245
256 453-458 Disease denotes fever MESH:D005334
257 460-465 Disease denotes cough MESH:D003371
258 471-478 Disease denotes fatigue MESH:D005221
259 528-536 Disease denotes headache MESH:D006261
260 551-560 Disease denotes diarrhoea MESH:D003967
261 562-570 Disease denotes dyspnoea MESH:D004417
262 576-587 Disease denotes lymphopenia MESH:D008231
263 659-668 Disease denotes pneumonia MESH:D011014
264 726-761 Disease denotes acute respiratory distress syndrome MESH:D012128
265 769-783 Disease denotes cardiac injury MESH:D006331
266 836-841 Disease denotes death MESH:D003643
267 1050-1062 Disease denotes inflammation MESH:D007249