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PMC:7127067 / 6160-9271 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T3 303-316 Body_part denotes immune system http://purl.org/sig/ont/fma/fma9825
T4 521-527 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T5 644-649 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T6 965-970 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T7 1619-1642 Body_part denotes upper respiratory tract http://purl.org/sig/ont/fma/fma45661
T8 1689-1695 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T9 1753-1763 Body_part denotes intestinal http://purl.org/sig/ont/fma/fma7199
T10 2052-2057 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T11 2188-2211 Body_part denotes upper respiratory tract http://purl.org/sig/ont/fma/fma45661
T12 2258-2264 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T13 2309-2314 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T14 2387-2409 Body_part denotes upper lobe of the lung http://purl.org/sig/ont/fma/fma7334
T15 2708-2713 Body_part denotes urine http://purl.org/sig/ont/fma/fma12274
T16 2952-2957 Body_part denotes urine http://purl.org/sig/ont/fma/fma12274

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T2 303-316 Body_part denotes immune system http://purl.obolibrary.org/obo/UBERON_0002405
T3 521-527 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T4 644-649 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T5 1619-1642 Body_part denotes upper respiratory tract http://purl.obolibrary.org/obo/UBERON_0001557
T6 1625-1642 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T7 1689-1695 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T8 2052-2057 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T9 2188-2211 Body_part denotes upper respiratory tract http://purl.obolibrary.org/obo/UBERON_0001557
T10 2194-2211 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T11 2258-2264 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T12 2309-2314 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T13 2387-2409 Body_part denotes upper lobe of the lung http://purl.obolibrary.org/obo/UBERON_0008948
T14 2393-2397 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T15 2405-2409 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T16 2708-2713 Body_part denotes urine http://purl.obolibrary.org/obo/UBERON_0001088
T17 2952-2957 Body_part denotes urine http://purl.obolibrary.org/obo/UBERON_0001088

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T47 28-36 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T48 37-46 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T49 142-150 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T50 444-452 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T51 563-572 Disease denotes diarrhoea http://purl.obolibrary.org/obo/MONDO_0001673
T52 588-599 Disease denotes lymphopenia http://purl.obolibrary.org/obo/MONDO_0003783
T53 671-680 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T54 738-773 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T55 744-773 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T56 789-795 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T57 1062-1074 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166
T58 1286-1307 Disease denotes respiratory disorders http://purl.obolibrary.org/obo/MONDO_0005087
T59 1318-1326 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T60 1327-1336 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T61 1363-1371 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T62 1372-1381 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T63 1464-1472 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T64 1512-1520 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T65 1684-1695 Disease denotes sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T66 1734-1742 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T67 1778-1787 Disease denotes diarrhoea http://purl.obolibrary.org/obo/MONDO_0001673
T68 1825-1833 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T69 1825-1829 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T70 1853-1862 Disease denotes diarrhoea http://purl.obolibrary.org/obo/MONDO_0001673
T71 1940-1948 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T72 2081-2089 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T73 2253-2264 Disease denotes sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T74 2518-2526 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T75 2568-2577 Disease denotes diarrhoea http://purl.obolibrary.org/obo/MONDO_0001673
T76 2611-2619 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T77 2611-2615 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T39 186-188 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T40 199-200 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T41 303-316 http://purl.obolibrary.org/obo/UBERON_0002405 denotes immune system
T42 642-643 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T43 644-649 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T44 965-970 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T45 1598-1607 http://purl.obolibrary.org/obo/UBERON_0001005 denotes airway as
T46 1753-1763 http://purl.obolibrary.org/obo/UBERON_0000160 denotes intestinal
T47 1753-1763 http://www.ebi.ac.uk/efo/EFO_0000834 denotes intestinal
T48 1793-1794 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T49 2052-2057 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T50 2167-2176 http://purl.obolibrary.org/obo/UBERON_0001005 denotes airway as
T51 2309-2314 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T52 2405-2409 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T53 2405-2409 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T54 2579-2580 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T55 2692-2696 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T56 2733-2734 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T2 1118-1128 Chemical denotes interferon http://purl.obolibrary.org/obo/CHEBI_52999
T3 2649-2651 Chemical denotes GI http://purl.obolibrary.org/obo/CHEBI_73907

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T4 1024-1039 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T5 1062-1074 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T46 0-11 Sentence denotes 2 Symptoms
T47 12-112 Sentence denotes The symptoms of COVID-19 infection appear after an incubation period of approximately 5.2 days [12].
T48 113-223 Sentence denotes The period from the onset of COVID-19 symptoms to death ranged from 6 to 41 days with a median of 14 days [8].
T49 224-317 Sentence denotes This period is dependent on the age of the patient and status of the patient's immune system.
T50 318-406 Sentence denotes It was shorter among patients >70-years old compared with those under the age of 70 [8].
T51 407-611 Sentence denotes The most common symptoms at onset of COVID-19 illness are fever, cough, and fatigue, while other symptoms include sputum production, headache, haemoptysis, diarrhoea, dyspnoea, and lymphopenia [5,6,8,13].
T52 612-858 Sentence denotes Clinical features revealed by a chest CT scan presented as pneumonia, however, there were abnormal features such as RNAaemia, acute respiratory distress syndrome, acute cardiac injury, and incidence of grand-glass opacities that led to death [6].
T53 859-1075 Sentence denotes In some cases, the multiple peripheral ground-glass opacities were observed in subpleural regions of both lungs [14] that likely induced both systemic and localized immune response that led to increased inflammation.
T54 1076-1261 Sentence denotes Regrettably, treatment of some cases with interferon inhalation showed no clinical effect and instead appeared to worsen the condition by progressing pulmonary opacities [14] (Fig. 2 ).
T55 1262-1337 Sentence denotes Fig. 2 The systemic and respiratory disorders caused by COVID-19 infection.
T56 1338-1408 Sentence denotes The incubation period of COVID-19 infection is approximately 5.2 days.
T57 1409-1502 Sentence denotes There are general similarities in the symptoms between COVID-19 and previous betacoronavirus.
T58 1503-1696 Sentence denotes However, COVID-19 showed some unique clinical features that include the targeting of the lower airway as evident by upper respiratory tract symptoms like rhinorrhoea, sneezing, and sore throat.
T59 1697-1863 Sentence denotes Additionally, patients infected with COVID-19 developed intestinal symptoms like diarrhoea only a low percentage of MERS-CoV or SARS-CoV patients exhibited diarrhoea.
T60 1864-2071 Sentence denotes It is important to note that there are similarities in the symptoms between COVID-19 and earlier betacoronavirus such as fever, dry cough, dyspnea, and bilateral ground-glass opacities on chest CT scans [6].
T61 2072-2273 Sentence denotes However, COVID-19 showed some unique clinical features that include the targeting of the lower airway as evident by upper respiratory tract symptoms like rhinorrhoea, sneezing, and sore throat [15,16].
T62 2274-2473 Sentence denotes In addition, based on results from chest radiographs upon admission, some of the cases show an infiltrate in the upper lobe of the lung that is associated with increasing dyspnea with hypoxemia [17].
T63 2474-2661 Sentence denotes Importantly, whereas patients infected with COVID-19 developed gastrointestinal symptoms like diarrhoea, a low percentage of MERS-CoV or SARS-CoV patients experienced similar GI distress.
T64 2662-2852 Sentence denotes Therefore, it is important to test faecal and urine samples to exclude a potential alternative route of transmission, specifically through health care workers, patients etc (Fig. 2) [15,16].
T65 2853-3111 Sentence denotes Therefore, development of methods to identify the various modes of transmission such as feacal and urine samples are urgently warranted in order to develop strategies to inhibit and/or minimize transmission and to develop therapeutics to control the disease.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T8 465-470 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T9 472-477 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T10 483-490 Phenotype denotes fatigue http://purl.obolibrary.org/obo/HP_0012378
T11 540-548 Phenotype denotes headache http://purl.obolibrary.org/obo/HP_0002315
T12 550-561 Phenotype denotes haemoptysis http://purl.obolibrary.org/obo/HP_0002105
T13 563-572 Phenotype denotes diarrhoea http://purl.obolibrary.org/obo/HP_0002014
T14 574-582 Phenotype denotes dyspnoea http://purl.obolibrary.org/obo/HP_0002094
T15 588-599 Phenotype denotes lymphopenia http://purl.obolibrary.org/obo/HP_0001888
T16 671-680 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T17 744-764 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T18 1226-1245 Phenotype denotes pulmonary opacities http://purl.obolibrary.org/obo/HP_0031457
T19 1684-1695 Phenotype denotes sore throat http://purl.obolibrary.org/obo/HP_0033050
T20 1778-1787 Phenotype denotes diarrhoea http://purl.obolibrary.org/obo/HP_0002014
T21 1853-1862 Phenotype denotes diarrhoea http://purl.obolibrary.org/obo/HP_0002014
T22 1985-1990 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T23 1992-2001 Phenotype denotes dry cough http://purl.obolibrary.org/obo/HP_0031246
T24 2003-2010 Phenotype denotes dyspnea http://purl.obolibrary.org/obo/HP_0002094
T25 2253-2264 Phenotype denotes sore throat http://purl.obolibrary.org/obo/HP_0033050
T26 2445-2452 Phenotype denotes dyspnea http://purl.obolibrary.org/obo/HP_0002094
T27 2458-2467 Phenotype denotes hypoxemia http://purl.obolibrary.org/obo/HP_0012418
T28 2568-2577 Phenotype denotes diarrhoea http://purl.obolibrary.org/obo/HP_0002014

2_test

Id Subject Object Predicate Lexical cue
32113704-23891402-131566396 2266-2268 23891402 denotes 15
32113704-23891402-131566396 2266-2268 23891402 denotes 15
32113704-12682352-131566397 2269-2271 12682352 denotes 16
32113704-12682352-131566397 2269-2271 12682352 denotes 16
32113704-23891402-131566398 2845-2847 23891402 denotes 15
32113704-23891402-131566398 2845-2847 23891402 denotes 15
32113704-12682352-131566399 2848-2850 12682352 denotes 16
32113704-12682352-131566399 2848-2850 12682352 denotes 16
32113704-31994742-55638556 220-221 31994742 denotes 8
32113704-31994742-55638556 220-221 31994742 denotes 8
32113704-31994742-55638557 403-404 31994742 denotes 8
32113704-31994742-55638557 403-404 31994742 denotes 8
32113704-31986264-55638558 603-604 31986264 denotes 6
32113704-31986264-55638558 603-604 31986264 denotes 6
32113704-31994742-55638559 605-606 31994742 denotes 8
32113704-31994742-55638559 605-606 31994742 denotes 8
32113704-32004066-55638560 607-609 32004066 denotes 13
32113704-32004066-55638560 607-609 32004066 denotes 13
32113704-31986264-55638561 855-856 31986264 denotes 6
32113704-31986264-55638561 855-856 31986264 denotes 6
32113704-31986264-55638562 2068-2069 31986264 denotes 6
32113704-31986264-55638562 2068-2069 31986264 denotes 6
32113704-23891402-55638563 2266-2268 23891402 denotes 15
32113704-23891402-55638563 2266-2268 23891402 denotes 15
32113704-12682352-55638564 2269-2271 12682352 denotes 16
32113704-12682352-55638564 2269-2271 12682352 denotes 16
32113704-23891402-55638565 2845-2847 23891402 denotes 15
32113704-23891402-55638565 2845-2847 23891402 denotes 15
32113704-12682352-55638566 2848-2850 12682352 denotes 16
32113704-12682352-55638566 2848-2850 12682352 denotes 16

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
209 1486-1501 Species denotes betacoronavirus Tax:694002
210 1711-1719 Species denotes patients Tax:9606
211 1813-1821 Species denotes MERS-CoV Tax:1335626
212 1825-1833 Species denotes SARS-CoV Tax:694009
213 1834-1842 Species denotes patients Tax:9606
214 1286-1307 Disease denotes respiratory disorders MESH:D012131
215 1318-1326 Disease denotes COVID-19 MESH:C000657245
216 1327-1336 Disease denotes infection MESH:D007239
217 1363-1371 Disease denotes COVID-19 MESH:C000657245
218 1372-1381 Disease denotes infection MESH:D007239
219 1464-1472 Disease denotes COVID-19 MESH:C000657245
220 1512-1520 Disease denotes COVID-19 MESH:C000657245
221 1657-1668 Disease denotes rhinorrhoea
222 1684-1695 Disease denotes sore throat MESH:D010608
223 1720-1728 Disease denotes infected MESH:D007239
224 1734-1742 Disease denotes COVID-19 MESH:C000657245
225 1753-1763 Disease denotes intestinal MESH:D007410
226 1778-1787 Disease denotes diarrhoea MESH:D003967
227 1853-1862 Disease denotes diarrhoea MESH:D003967
248 267-274 Species denotes patient Tax:9606
249 293-300 Species denotes patient Tax:9606
250 339-347 Species denotes patients Tax:9606
251 28-36 Disease denotes COVID-19 MESH:C000657245
252 37-46 Disease denotes infection MESH:D007239
253 142-150 Disease denotes COVID-19 MESH:C000657245
254 163-168 Disease denotes death MESH:D003643
255 444-452 Disease denotes COVID-19 MESH:C000657245
256 465-470 Disease denotes fever MESH:D005334
257 472-477 Disease denotes cough MESH:D003371
258 483-490 Disease denotes fatigue MESH:D005221
259 540-548 Disease denotes headache MESH:D006261
260 563-572 Disease denotes diarrhoea MESH:D003967
261 574-582 Disease denotes dyspnoea MESH:D004417
262 588-599 Disease denotes lymphopenia MESH:D008231
263 671-680 Disease denotes pneumonia MESH:D011014
264 738-773 Disease denotes acute respiratory distress syndrome MESH:D012128
265 781-795 Disease denotes cardiac injury MESH:D006331
266 848-853 Disease denotes death MESH:D003643
267 1062-1074 Disease denotes inflammation MESH:D007249
288 1961-1976 Species denotes betacoronavirus Tax:694002
289 2495-2503 Species denotes patients Tax:9606
290 2599-2607 Species denotes MERS-CoV Tax:1335626
291 2611-2619 Species denotes SARS-CoV Tax:694009
292 2620-2628 Species denotes patients Tax:9606
293 2822-2830 Species denotes patients Tax:9606
294 1940-1948 Disease denotes COVID-19 MESH:C000657245
295 1985-1990 Disease denotes fever MESH:D005334
296 1992-2001 Disease denotes dry cough MESH:D003371
297 2003-2010 Disease denotes dyspnea MESH:D004417
298 2081-2089 Disease denotes COVID-19 MESH:C000657245
299 2226-2237 Disease denotes rhinorrhoea
300 2253-2264 Disease denotes sore throat MESH:D010608
301 2445-2452 Disease denotes dyspnea MESH:D004417
302 2458-2467 Disease denotes hypoxemia MESH:D000860
303 2504-2512 Disease denotes infected MESH:D007239
304 2518-2526 Disease denotes COVID-19 MESH:C000657245
305 2537-2562 Disease denotes gastrointestinal symptoms MESH:D012817
306 2568-2577 Disease denotes diarrhoea MESH:D003967
307 2649-2660 Disease denotes GI distress MESH:D012128