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PMC:7127067 / 1591-20017 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T2 91-109 Body_part denotes respiratory system http://purl.org/sig/ont/fma/fma7158
T3 4872-4885 Body_part denotes immune system http://purl.org/sig/ont/fma/fma9825
T4 5090-5096 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T5 5213-5218 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T6 5534-5539 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T7 6188-6211 Body_part denotes upper respiratory tract http://purl.org/sig/ont/fma/fma45661
T8 6258-6264 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T9 6322-6332 Body_part denotes intestinal http://purl.org/sig/ont/fma/fma7199
T10 6621-6626 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T11 6757-6780 Body_part denotes upper respiratory tract http://purl.org/sig/ont/fma/fma45661
T12 6827-6833 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T13 6878-6883 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T14 6956-6978 Body_part denotes upper lobe of the lung http://purl.org/sig/ont/fma/fma7334
T15 7277-7282 Body_part denotes urine http://purl.org/sig/ont/fma/fma12274
T16 7521-7526 Body_part denotes urine http://purl.org/sig/ont/fma/fma12274
T17 8228-8237 Body_part denotes leukocyte http://purl.org/sig/ont/fma/fma62852
T18 8302-8308 Body_part denotes plasma http://purl.org/sig/ont/fma/fma62970
T19 8326-8335 Body_part denotes cytokines http://purl.org/sig/ont/fma/fma84050
T20 8462-8467 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T21 8475-8479 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T22 8518-8524 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T23 8671-8680 Body_part denotes leukocyte http://purl.org/sig/ont/fma/fma62852
T24 8703-8708 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T25 8731-8742 Body_part denotes neutrophils http://purl.org/sig/ont/fma/fma62860
T26 8783-8788 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T27 8800-8807 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T28 8868-8879 Body_part denotes erythrocyte http://purl.org/sig/ont/fma/fma62845
T29 8985-9003 Body_part denotes respiratory system http://purl.org/sig/ont/fma/fma7158
T30 9156-9161 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T31 9172-9181 Body_part denotes cytokines http://purl.org/sig/ont/fma/fma84050
T32 9186-9196 Body_part denotes chemokines http://purl.org/sig/ont/fma/fma241981
T33 9258-9261 Body_part denotes IL1 http://purl.org/sig/ont/fma/fma86583
T34 9484-9493 Body_part denotes cytokines http://purl.org/sig/ont/fma/fma84050
T35 9504-9507 Body_part denotes IL2 http://purl.org/sig/ont/fma/fma84051
T36 11390-11395 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T37 11461-11474 Body_part denotes cell membrane http://purl.org/sig/ont/fma/fma63841
T38 11461-11465 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T39 11500-11504 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T40 11505-11521 Body_part denotes epithelial cells http://purl.org/sig/ont/fma/fma66768
T41 11516-11521 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T42 11979-11984 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T43 12143-12149 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T44 12294-12304 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T45 13610-13614 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T46 13680-13690 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T47 14226-14229 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T48 15571-15574 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T49 16811-16824 Body_part denotes immune system http://purl.org/sig/ont/fma/fma9825
T50 17134-17139 Body_part denotes urine http://purl.org/sig/ont/fma/fma12274

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 91-109 Body_part denotes respiratory system http://purl.obolibrary.org/obo/UBERON_0001004
T2 4872-4885 Body_part denotes immune system http://purl.obolibrary.org/obo/UBERON_0002405
T3 5090-5096 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T4 5213-5218 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T5 6188-6211 Body_part denotes upper respiratory tract http://purl.obolibrary.org/obo/UBERON_0001557
T6 6194-6211 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T7 6258-6264 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T8 6621-6626 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T9 6757-6780 Body_part denotes upper respiratory tract http://purl.obolibrary.org/obo/UBERON_0001557
T10 6763-6780 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T11 6827-6833 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T12 6878-6883 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T13 6956-6978 Body_part denotes upper lobe of the lung http://purl.obolibrary.org/obo/UBERON_0008948
T14 6962-6966 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T15 6974-6978 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T16 7277-7282 Body_part denotes urine http://purl.obolibrary.org/obo/UBERON_0001088
T17 7521-7526 Body_part denotes urine http://purl.obolibrary.org/obo/UBERON_0001088
T18 8518-8524 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T19 8783-8788 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T20 8985-9003 Body_part denotes respiratory system http://purl.obolibrary.org/obo/UBERON_0001004
T21 9156-9161 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T22 11500-11504 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T23 16811-16824 Body_part denotes immune system http://purl.obolibrary.org/obo/UBERON_0002405
T24 16972-16977 Body_part denotes hands http://purl.obolibrary.org/obo/UBERON_0002398
T25 17134-17139 Body_part denotes urine http://purl.obolibrary.org/obo/UBERON_0001088

LitCovid_AGAC

Id Subject Object Predicate Lexical cue
p84922s19 8302-8335 MPA denotes plasma pro-inflammatory cytokines

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T17 166-199 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T18 201-205 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T19 453-462 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T20 768-776 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T21 909-917 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T22 918-928 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T23 1083-1118 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T24 1089-1118 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T25 1255-1263 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T26 1264-1273 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T27 1343-1351 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T28 1353-1393 Disease denotes hypertension, and cardiovascular disease http://purl.obolibrary.org/obo/MONDO_0001302
T29 1353-1365 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T30 1371-1393 Disease denotes cardiovascular disease http://purl.obolibrary.org/obo/MONDO_0004995
T31 1475-1495 Disease denotes nosocomial infection http://purl.obolibrary.org/obo/MONDO_0043544
T32 1486-1495 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T33 1523-1531 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T34 1955-1963 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T35 2219-2227 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T36 2821-2829 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T37 2830-2839 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T38 3053-3062 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T39 3147-3155 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T40 3429-3438 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T41 3771-3780 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T42 3879-3888 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T43 4300-4308 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T44 4309-4319 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T45 4362-4370 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T46 4511-4520 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T47 4597-4605 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T48 4606-4615 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T49 4711-4719 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T50 5013-5021 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T51 5132-5141 Disease denotes diarrhoea http://purl.obolibrary.org/obo/MONDO_0001673
T52 5157-5168 Disease denotes lymphopenia http://purl.obolibrary.org/obo/MONDO_0003783
T53 5240-5249 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T54 5307-5342 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T55 5313-5342 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T56 5358-5364 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T57 5631-5643 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166
T58 5855-5876 Disease denotes respiratory disorders http://purl.obolibrary.org/obo/MONDO_0005087
T59 5887-5895 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T60 5896-5905 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T61 5932-5940 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T62 5941-5950 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T63 6033-6041 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T64 6081-6089 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T65 6253-6264 Disease denotes sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T66 6303-6311 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T67 6347-6356 Disease denotes diarrhoea http://purl.obolibrary.org/obo/MONDO_0001673
T68 6394-6402 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T69 6394-6398 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T70 6422-6431 Disease denotes diarrhoea http://purl.obolibrary.org/obo/MONDO_0001673
T71 6509-6517 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T72 6650-6658 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T73 6822-6833 Disease denotes sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T74 7087-7095 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T75 7137-7146 Disease denotes diarrhoea http://purl.obolibrary.org/obo/MONDO_0001673
T76 7180-7188 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T77 7180-7184 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T78 7721-7729 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T79 8065-8073 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T80 8205-8213 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T81 8348-8356 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T82 8600-8608 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T83 8609-8618 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T84 8655-8665 Disease denotes leucopenia http://purl.obolibrary.org/obo/MONDO_0003785
T85 8961-8969 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T86 8970-8979 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T87 9031-9040 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T88 9125-9131 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T89 9225-9233 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T90 9234-9243 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T91 9826-9834 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T92 9930-9939 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T93 10058-10066 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T94 10217-10225 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T95 10267-10300 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T96 10302-10306 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T97 10393-10401 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T98 10512-10520 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T99 10521-10530 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T100 11210-11234 Disease denotes infection by respiratory http://purl.obolibrary.org/obo/MONDO_0024355
T101 11210-11219 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T102 11256-11265 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T103 11417-11432 Disease denotes viral infection http://purl.obolibrary.org/obo/MONDO_0005108
T104 11423-11432 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T105 11623-11631 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T106 11623-11627 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T107 11878-11886 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T108 11916-11924 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T109 11916-11920 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T110 12101-12109 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T111 12163-12171 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T112 12450-12458 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T113 12492-12500 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T114 12492-12496 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T115 12542-12550 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T116 12542-12546 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T117 12657-12665 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T118 12719-12727 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T119 12719-12723 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T120 12779-12787 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T121 12932-12940 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T122 13063-13071 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T123 13103-13111 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T124 13103-13107 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T125 13192-13200 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T126 13298-13306 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T127 13517-13525 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T128 13526-13536 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T129 13759-13767 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T130 13759-13763 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T131 13904-13912 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T132 13913-13922 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T133 14073-14081 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T134 14082-14091 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T135 14271-14286 Disease denotes virus infection http://purl.obolibrary.org/obo/MONDO_0005108
T136 14277-14286 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T137 14775-14794 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T138 14785-14794 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T139 14950-14958 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T140 14959-14968 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T141 15179-15188 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T142 15189-15205 Disease denotes virus infections http://purl.obolibrary.org/obo/MONDO_0005108
T143 15287-15295 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T144 15296-15305 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T145 15482-15490 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T146 15491-15500 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T147 15710-15718 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T148 15719-15729 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T149 15793-15801 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T150 16019-16027 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T151 16028-16037 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T152 16320-16328 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T153 16732-16740 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T154 16860-16875 Disease denotes viral infection http://purl.obolibrary.org/obo/MONDO_0005108
T155 16866-16875 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T156 17422-17430 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T157 17431-17440 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T158 17530-17540 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T159 18023-18032 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T8 85-90 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T9 91-109 http://purl.obolibrary.org/obo/UBERON_0001004 denotes respiratory system
T10 323-324 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 376-377 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T12 535-536 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 553-559 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T14 653-654 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T15 708-709 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T16 798-800 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T17 1010-1012 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T18 1174-1176 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T19 1539-1540 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 1561-1566 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T21 1800-1806 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T22 1895-1897 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T23 1905-1906 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T24 2127-2129 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T25 2158-2159 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T26 2251-2252 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T27 2490-2491 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T28 3084-3086 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T29 3116-3121 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T30 3125-3130 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T31 3252-3255 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T32 3256-3259 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T33 3406-3412 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T34 3442-3444 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T35 3484-3490 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T36 3608-3609 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T37 3949-3961 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organisation
T38 4141-4144 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T39 4755-4757 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T40 4768-4769 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T41 4872-4885 http://purl.obolibrary.org/obo/UBERON_0002405 denotes immune system
T42 5211-5212 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T43 5213-5218 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T44 5534-5539 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T45 6167-6176 http://purl.obolibrary.org/obo/UBERON_0001005 denotes airway as
T46 6322-6332 http://purl.obolibrary.org/obo/UBERON_0000160 denotes intestinal
T47 6322-6332 http://www.ebi.ac.uk/efo/EFO_0000834 denotes intestinal
T48 6362-6363 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T49 6621-6626 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T50 6736-6745 http://purl.obolibrary.org/obo/UBERON_0001005 denotes airway as
T51 6878-6883 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T52 6974-6978 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T53 6974-6978 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T54 7148-7149 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T55 7261-7265 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T56 7302-7303 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T57 7849-7851 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T58 8164-8166 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T59 8302-8308 http://purl.obolibrary.org/obo/UBERON_0001969 denotes plasma
T60 8377-8378 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T61 8421-8422 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T62 8462-8467 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T63 8473-8474 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T64 8703-8708 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T65 8758-8759 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T66 8783-8788 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T67 8783-8788 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T68 8868-8879 http://purl.obolibrary.org/obo/CL_0000232 denotes erythrocyte
T69 8983-8984 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T70 8985-9003 http://purl.obolibrary.org/obo/UBERON_0001004 denotes respiratory system
T71 9014-9019 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T72 9156-9161 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T73 9156-9161 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T74 9277-9280 http://purl.obolibrary.org/obo/CLO_0053704 denotes IL8
T75 9305-9309 http://purl.obolibrary.org/obo/PR_000005932 denotes GCSF
T76 9504-9507 http://purl.obolibrary.org/obo/PR_000001379 denotes IL2
T77 9520-9524 http://purl.obolibrary.org/obo/PR_000005932 denotes GCSF
T78 9696-9702 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T79 9735-9742 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T80 9873-9874 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T81 9959-9965 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T82 10030-10031 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T83 10092-10095 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T84 10255-10258 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T85 10406-10412 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T86 10483-10484 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T87 10632-10638 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T88 10813-10814 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T89 11361-11362 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T90 11390-11395 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T91 11461-11465 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T92 11466-11474 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T93 11500-11521 http://purl.obolibrary.org/obo/CL_0000082 denotes lung epithelial cells
T94 11552-11557 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T95 11568-11571 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T96 11591-11596 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T97 11600-11605 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T98 11693-11698 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T99 11738-11741 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T100 11979-11984 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T101 12067-12079 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organisation
T102 12086-12089 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T103 12113-12114 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T104 12139-12142 http://purl.obolibrary.org/obo/CLO_0050884 denotes Ten
T105 12186-12187 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T106 12395-12396 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T107 12577-12581 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T108 12742-12748 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T109 12750-12754 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T110 12765-12772 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T111 12857-12863 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T112 12868-12871 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T113 12947-12948 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T114 13145-13146 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T115 13180-13186 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T116 13228-13231 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T117 13313-13316 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T118 13344-13345 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T119 13396-13397 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T120 13411-13417 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T121 13450-13456 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T122 13499-13505 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T123 13559-13566 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T124 13572-13573 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T125 13610-13614 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T126 13627-13628 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T127 13650-13653 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T128 13791-13798 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T129 13979-13980 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T130 14117-14123 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T131 14271-14276 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T132 14493-14494 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T133 14849-14854 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T134 14869-14870 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T135 14970-14972 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T136 14998-14999 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T137 15112-15115 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T138 15189-15194 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T139 15556-15563 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T140 15843-15849 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T141 15910-15916 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T142 15985-15986 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T143 15996-16003 http://purl.obolibrary.org/obo/NCBITaxon_9443 denotes primate
T144 16093-16100 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T145 16148-16149 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T146 16174-16179 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T147 16547-16548 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T148 16804-16805 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T149 16811-16824 http://purl.obolibrary.org/obo/UBERON_0002405 denotes immune system
T150 16981-16982 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T151 17041-17048 http://purl.obolibrary.org/obo/BFO_0000030 denotes objects
T152 17090-17095 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T153 17383-17388 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T154 17588-17593 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T155 17607-17613 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T156 17640-17647 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T157 17678-17679 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T158 17820-17826 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T159 17997-18004 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T160 18008-18009 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T161 18083-18089 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T162 18148-18154 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T163 18254-18255 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T2 5687-5697 Chemical denotes interferon http://purl.obolibrary.org/obo/CHEBI_52999
T3 7218-7220 Chemical denotes GI http://purl.obolibrary.org/obo/CHEBI_73907
T4 8800-8807 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T5 9277-9280 Chemical denotes IL8 http://purl.obolibrary.org/obo/CHEBI_138181
T6 9906-9914 Chemical denotes carriers http://purl.obolibrary.org/obo/CHEBI_78059
T7 11761-11772 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433
T8 12124-12129 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T9 12294-12304 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T10 12401-12405 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T11 13637-13646 Chemical denotes indicator http://purl.obolibrary.org/obo/CHEBI_47867
T12 13680-13690 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T13 13680-13685 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T14 13686-13690 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T15 14038-14053 Chemical denotes antiviral drugs http://purl.obolibrary.org/obo/CHEBI_36044
T16 14038-14047 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T17 14048-14053 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T18 14175-14190 Chemical denotes antiviral drugs http://purl.obolibrary.org/obo/CHEBI_36044
T19 14175-14184 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T20 14185-14190 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T21 14196-14206 Chemical denotes Nucleoside http://purl.obolibrary.org/obo/CHEBI_33838
T22 14226-14249 Chemical denotes HIV-protease inhibitors http://purl.obolibrary.org/obo/CHEBI_35660
T23 14230-14249 Chemical denotes protease inhibitors http://purl.obolibrary.org/obo/CHEBI_37670|http://purl.obolibrary.org/obo/CHEBI_60258
T25 14239-14249 Chemical denotes inhibitors http://purl.obolibrary.org/obo/CHEBI_35222
T26 14306-14315 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T27 14437-14452 Chemical denotes antiviral drugs http://purl.obolibrary.org/obo/CHEBI_36044
T28 14437-14446 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T29 14447-14452 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T30 14528-14539 Chemical denotes oseltamivir http://purl.obolibrary.org/obo/CHEBI_7798
T31 14548-14557 Chemical denotes lopinavir http://purl.obolibrary.org/obo/CHEBI_31781
T32 14566-14575 Chemical denotes ritonavir http://purl.obolibrary.org/obo/CHEBI_45409
T33 14621-14632 Chemical denotes ganciclovir http://purl.obolibrary.org/obo/CHEBI_465284
T34 14699-14708 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T35 14709-14719 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T36 14724-14735 Chemical denotes chloroquine http://purl.obolibrary.org/obo/CHEBI_3638
T37 14811-14820 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T38 15244-15248 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T39 15431-15441 Chemical denotes antivirals http://purl.obolibrary.org/obo/CHEBI_22587
T40 15455-15459 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T41 15509-15518 Chemical denotes Lopinavir http://purl.obolibrary.org/obo/CHEBI_31781
T42 15530-15554 Chemical denotes Neuraminidase inhibitors http://purl.obolibrary.org/obo/CHEBI_52425
T43 15544-15554 Chemical denotes inhibitors http://purl.obolibrary.org/obo/CHEBI_35222
T44 15556-15563 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T45 15585-15595 Chemical denotes inhibitors http://purl.obolibrary.org/obo/CHEBI_35222
T46 15691-15696 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T47 16950-16958 Chemical denotes reagents http://purl.obolibrary.org/obo/CHEBI_33893

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T3 710-722 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction
T4 5593-5608 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T5 5631-5643 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation
T6 7685-7697 http://purl.obolibrary.org/obo/GO_0009405 denotes Pathogenesis
T7 8437-8446 http://purl.obolibrary.org/obo/GO_0007585 denotes breathing
T8 8945-8957 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis
T9 11417-11432 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infection
T10 11959-11978 http://purl.obolibrary.org/obo/GO_0044409 denotes entry into the host
T11 15571-15584 http://purl.obolibrary.org/obo/GO_0032774 denotes RNA synthesis
T12 15575-15584 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis
T13 16174-16197 http://purl.obolibrary.org/obo/GO_0019048 denotes virus-host interactions
T14 16860-16875 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infection

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T15 0-15 Sentence denotes 1 Introduction
T16 16-110 Sentence denotes Coronavirus is one of the major pathogens that primarily targets the human respiratory system.
T17 111-352 Sentence denotes Previous outbreaks of coronaviruses (CoVs) include the severe acute respiratory syndrome (SARS)-CoV and the Middle East respiratory syndrome (MERS)-CoV which have been previously characterized as agents that are a great public health threat.
T18 353-486 Sentence denotes In late December 2019, a cluster of patients was admitted to hospitals with an initial diagnosis of pneumonia of an unknown etiology.
T19 487-615 Sentence denotes These patients were epidemiologically linked to a seafood and wet animal wholesale market in Wuhan, Hubei Province, China [1,2].
T20 616-890 Sentence denotes Early reports predicted the onset of a potential Coronavirus outbreak given the estimate of a reproduction number for the 2019 Novel (New) Coronavirus (COVID-19, named by WHO on Feb 11, 2020) which was deemed to be significantly larger than 1 (ranges from 2.24 to 3.58) [3].
T21 891-943 Sentence denotes The chronology of COVID-19 infections is as follows.
T22 944-995 Sentence denotes The first cases were reported in December 2019 [4].
T23 996-1153 Sentence denotes From December 18, 2019 through December 29, 2019, five patients were hospitalized with acute respiratory distress syndrome and one of these patients died[5].
T24 1154-1398 Sentence denotes By January 2, 2020, 41 admitted hospital patients had been identified as having laboratory-confirmed COVID-19 infection, less than half of these patients had underlying diseases, including diabetes, hypertension, and cardiovascular disease [6].
T25 1399-1496 Sentence denotes These patients were presumed to be infected in that hospital, likely due to nosocomial infection.
T26 1497-1742 Sentence denotes It was concluded that the COVID-19 is not a super-hot spreading virus (spread by one patient to many others), but rather likely spread due to many patients getting infected at various locations throughout the hospital through unknown mechanisms.
T27 1743-1880 Sentence denotes In addition, only patients that got clinically sick were tested, thus there were likely many more patients that were presumably infected.
T28 1881-2031 Sentence denotes As of January 22, 2020, a total of 571 cases of the 2019-new coronavirus (COVID-19) were reported in 25 provinces (districts and cities) in China [7].
T29 2032-2136 Sentence denotes The China National Health Commission reported the details of the first 17 deaths up to January 22, 2020.
T30 2137-2276 Sentence denotes On January 25, 2020, a total of 1975 cases were confirmed to be infected with the COVID-19 in mainland China with a total of 56 deaths [8].
T31 2277-2377 Sentence denotes Another report on January 24, 2020 estimated the cumulative incidence in China to be 5502 cases [9].
T32 2378-2736 Sentence denotes As of January 30, 2020, 7734 cases have been confirmed in China and 90 other cases have also been reported from a number of countries that include Taiwan, Thailand, Vietnam, Malaysia, Nepal, Sri Lanka, Cambodia, Japan, Singapore, Republic of Korea, United Arab Emirates, United States, The Philippines, India, Australia, Canada, Finland, France, and Germany.
T33 2737-2802 Sentence denotes The case fatality rate was calculated to be 2.2% (170/7824) [10].
T34 2803-2967 Sentence denotes The first case of COVID-19 infection confirmed in the United States led to the description, identification, diagnosis, clinical course, and management of this case.
T35 2968-3088 Sentence denotes This includes the patient's initial mild symptoms at presentation and progression to pneumonia on day 9 of illness [11].
T36 3089-3247 Sentence denotes Further, the first case of human-to-human transmission of COVID-19 was reported in the US on January 30, 2020 (https://www.cdc.gov/media/releases/2020/p0130).
T37 3248-3345 Sentence denotes The CDC has so far screened >30,000 passengers arriving at US airports for the novel coronavirus.
T38 3346-3463 Sentence denotes Following such initial screening, 443 individuals have been tested for coronavirus infection in 41 states in the USA.
T39 3464-3607 Sentence denotes Only 15 (3.1%) were tested positive, 347 were negative and results on the remaining 81 are pending (https://www.cdc.gov/coronavirus/2019-ncov).
T40 3608-3889 Sentence denotes A report published in Nature revealed that Chinese health authorities concluded that as of February 7, 2019, there have been 31,161 people who have contracted the infection in China, and more than 630 people have died (http://www.nature.com/articles/d41586-020-00154) of infection.
T41 3890-4061 Sentence denotes At the time of preparing this manuscript, the World Health Organisation (WHO) reported 51,174 confirmed cases including 15, 384 severe cases and 1666 death cases in China.
T42 4062-4259 Sentence denotes Globally, the number of confirmed cases as of this writing (February 16, 2020) has reached 51,857 in 25 countries (https://www.who.int/docs/default-source/coronaviruse/situation-reports) (Fig. 1 ).
T43 4260-4345 Sentence denotes Figure 1 The chronological incidence of COVID-19 infections and death cases in China.
T44 4346-4396 Sentence denotes Infections with COVID-19 appears in December 2019.
T45 4397-4567 Sentence denotes At the time of preparing this manuscript, February 16, 2020 there have been 51,174 people who have contracted the infection in China, and more than 1666 people have died.
T46 4569-4580 Sentence denotes 2 Symptoms
T47 4581-4681 Sentence denotes The symptoms of COVID-19 infection appear after an incubation period of approximately 5.2 days [12].
T48 4682-4792 Sentence denotes The period from the onset of COVID-19 symptoms to death ranged from 6 to 41 days with a median of 14 days [8].
T49 4793-4886 Sentence denotes This period is dependent on the age of the patient and status of the patient's immune system.
T50 4887-4975 Sentence denotes It was shorter among patients >70-years old compared with those under the age of 70 [8].
T51 4976-5180 Sentence denotes The most common symptoms at onset of COVID-19 illness are fever, cough, and fatigue, while other symptoms include sputum production, headache, haemoptysis, diarrhoea, dyspnoea, and lymphopenia [5,6,8,13].
T52 5181-5427 Sentence denotes Clinical features revealed by a chest CT scan presented as pneumonia, however, there were abnormal features such as RNAaemia, acute respiratory distress syndrome, acute cardiac injury, and incidence of grand-glass opacities that led to death [6].
T53 5428-5644 Sentence denotes In some cases, the multiple peripheral ground-glass opacities were observed in subpleural regions of both lungs [14] that likely induced both systemic and localized immune response that led to increased inflammation.
T54 5645-5830 Sentence denotes Regrettably, treatment of some cases with interferon inhalation showed no clinical effect and instead appeared to worsen the condition by progressing pulmonary opacities [14] (Fig. 2 ).
T55 5831-5906 Sentence denotes Fig. 2 The systemic and respiratory disorders caused by COVID-19 infection.
T56 5907-5977 Sentence denotes The incubation period of COVID-19 infection is approximately 5.2 days.
T57 5978-6071 Sentence denotes There are general similarities in the symptoms between COVID-19 and previous betacoronavirus.
T58 6072-6265 Sentence denotes However, COVID-19 showed some unique clinical features that include the targeting of the lower airway as evident by upper respiratory tract symptoms like rhinorrhoea, sneezing, and sore throat.
T59 6266-6432 Sentence denotes Additionally, patients infected with COVID-19 developed intestinal symptoms like diarrhoea only a low percentage of MERS-CoV or SARS-CoV patients exhibited diarrhoea.
T60 6433-6640 Sentence denotes It is important to note that there are similarities in the symptoms between COVID-19 and earlier betacoronavirus such as fever, dry cough, dyspnea, and bilateral ground-glass opacities on chest CT scans [6].
T61 6641-6842 Sentence denotes However, COVID-19 showed some unique clinical features that include the targeting of the lower airway as evident by upper respiratory tract symptoms like rhinorrhoea, sneezing, and sore throat [15,16].
T62 6843-7042 Sentence denotes In addition, based on results from chest radiographs upon admission, some of the cases show an infiltrate in the upper lobe of the lung that is associated with increasing dyspnea with hypoxemia [17].
T63 7043-7230 Sentence denotes Importantly, whereas patients infected with COVID-19 developed gastrointestinal symptoms like diarrhoea, a low percentage of MERS-CoV or SARS-CoV patients experienced similar GI distress.
T64 7231-7421 Sentence denotes Therefore, it is important to test faecal and urine samples to exclude a potential alternative route of transmission, specifically through health care workers, patients etc (Fig. 2) [15,16].
T65 7422-7680 Sentence denotes Therefore, development of methods to identify the various modes of transmission such as feacal and urine samples are urgently warranted in order to develop strategies to inhibit and/or minimize transmission and to develop therapeutics to control the disease.
T66 7682-7697 Sentence denotes 3 Pathogenesis
T67 7698-7837 Sentence denotes The severe symptoms of COVID-19 are associated with an increasing numbers and rate of fatalities specially in the epidemic region of China.
T68 7838-8007 Sentence denotes On January 22, 2020, the China National Health Commission reported the details of the first 17 deaths and on January 25, 2020 the death cases increased to 56 deaths [8].
T69 8008-8181 Sentence denotes The percentage of death among the reported 2684 cases of COVID-19 was approximately 2.84% as of Jan 25, 2020 and the median age of the deaths was 75 (range 48–89) years [8].
T70 8182-8336 Sentence denotes Patients infected with COVID-19 showed higher leukocyte numbers, abnormal respiratory findings, and increased levels of plasma pro-inflammatory cytokines.
T71 8337-8503 Sentence denotes One of the COVID-19 case reports showed a patient at 5 days of fever presented with a cough, coarse breathing sounds of both lungs, and a body temperature of 39.0 °C.
T72 8504-8624 Sentence denotes The patient's sputum showed positive real-time polymerase chain reaction results that confirmed COVID-19 infection [14].
T73 8625-8743 Sentence denotes The laboratory studies showed leucopenia with leukocyte counts of 2.91 × 10^9 cells/L of which 70.0% were neutrophils.
T74 8744-8862 Sentence denotes Additionally, a value of 16.16 mg/L of blood C-reactive protein was noted which is above the normal range (0–10 mg/L).
T75 8863-8935 Sentence denotes High erythrocyte sedimentation rate and D-dimer were also observed [14].
T76 8936-9136 Sentence denotes The main pathogenesis of COVID-19 infection as a respiratory system targeting virus was severe pneumonia, RNAaemia, combined with the incidence of ground-glass opacities, and acute cardiac injury [6].
T77 9137-9373 Sentence denotes Significantly high blood levels of cytokines and chemokines were noted in patients with COVID-19 infection that included IL1-β, IL1RA, IL7, IL8, IL9, IL10, basic FGF2, GCSF, GMCSF, IFNγ, IP10, MCP1, MIP1α, MIP1β, PDGFB, TNFα, and VEGFA.
T78 9374-9604 Sentence denotes Some of the severe cases that were admitted to the intensive care unit showed high levels of pro-inflammatory cytokines including IL2, IL7, IL10, GCSF, IP10, MCP1, MIP1α, and TNFα that are reasoned to promote disease severity [6].
T79 9606-9621 Sentence denotes 4 Transmission
T80 9622-9835 Sentence denotes Based on the large number of infected people that were exposed to the wet animal market in Wuhan City where live animals are routinely sold, it is suggested that this is the likely zoonotic origin of the COVID-19.
T81 9836-9966 Sentence denotes Efforts have been made to search for a reservoir host or intermediate carriers from which the infection may have spread to humans.
T82 9967-10067 Sentence denotes Initial reports identified two species of snakes that could be a possible reservoir of the COVID-19.
T83 10068-10187 Sentence denotes However, to date, there has been no consistent evidence of coronavirus reservoirs other than mammals and birds [10,18].
T84 10188-10413 Sentence denotes Genomic sequence analysis of COVID-19 showed 88% identity with two bat-derived severe acute respiratory syndrome (SARS)-like coronaviruses [19,20], indicating that mammals are the most likely link between COVID-19 and humans.
T85 10414-10531 Sentence denotes Several reports have suggested that person-to-person transmission is a likely route for spreading COVID-19 infection.
T86 10532-10663 Sentence denotes This is supported by cases that occurred within families and among people who did not visit the wet animal market in Wuhan [13,21].
T87 10664-10809 Sentence denotes Person-to-person transmission occurs primarily via direct contact or through droplets spread by coughing or sneezing from an infected individual.
T88 10810-10997 Sentence denotes In a small study conducted on women in their third trimester who were confirmed to be infected with the coronavirus, there was no evidence that there is transmission from mother to child.
T89 10998-11131 Sentence denotes However, all pregnant mothers underwent cesarean sections, so it remains unclear whether transmission can occur during vaginal birth.
T90 11132-11345 Sentence denotes This is important because pregnant mothers are relatively more susceptible to infection by respiratory pathogens and severe pneumonia (https://www.thelancet.com, DOI:https://doi.org/10.1016/S0140-6736(20)30360-3).
T91 11346-11475 Sentence denotes The binding of a receptor expressed by host cells is the first step of viral infection followed by fusion with the cell membrane.
T92 11476-11558 Sentence denotes It is reasoned that the lung epithelial cells are the primary target of the virus.
T93 11559-11817 Sentence denotes Thus, it has been reported that human-to-human transmissions of SARS-CoV occurs by the binding between the receptor-binding domain of virus spikes and the cellular receptor which has been identified as angiotensin-converting enzyme 2 (ACE2) receptor [20,22].
T94 11818-11925 Sentence denotes Importantly, the sequence of the receptor-binding domain of COVID-19 spikes is similar to that of SARS-CoV.
T95 11926-12027 Sentence denotes This data strongly suggests that entry into the host cells is most likely via the ACE2 receptor [20].
T96 12029-12053 Sentence denotes 5 Phylogenetic analysis
T97 12054-12138 Sentence denotes World Health Organisation (WHO) has classified COVID-19 as a β CoV of group 2B [23].
T98 12139-12251 Sentence denotes Ten genome sequences of COVID-19 obtained from a total of nine patients exhibited 99.98% sequence identity [19].
T99 12252-12421 Sentence denotes Another study showed there was 99.8–99.9% nucleotide identity in isolates from five patients and the sequence results revealed the presence of a new beta-CoV strain [5].
T100 12422-12587 Sentence denotes The genetic sequence of the COVID-19 showed more than 80% identity to SARS-CoV and 50% to the MERS-CoV [5,19], and both SARS-CoV and MERS-CoV originate in bats [24].
T101 12588-12778 Sentence denotes Thus, the evidence from the phylogenetic analysis indicates that the COVID-19 belongs to the genus betacoronavirus, which includes SARS-CoV, that infects humans, bats, and wild animals [25].
T102 12779-12927 Sentence denotes COVID-19 represents the seventh member of the coronavirus family that infects humans and has been classified under the orthocoronavirinae subfamily.
T103 12928-12993 Sentence denotes The COVID-19 forms a clade within the subgenus sarbecovirus [25].
T104 12994-13187 Sentence denotes Based on the genetic sequence identity and the phylogenetic reports, COVID-19 is sufficiently different from SARS-CoV and it can thus be considered as a new betacoronavirus that infects humans.
T105 13188-13253 Sentence denotes The COVID-19 most likely developed from bat origin coronaviruses.
T106 13254-13542 Sentence denotes Another piece of evidence that supports the COVID-19 is of bat origin is the existence of a high degree of homology of the ACE2 receptor from a diversity of animal species, thus implicating these animal species as possible intermediate hosts or animal models for COVID-19 infections [20].
T107 13543-13666 Sentence denotes Moreover, these viruses have a single intact open reading frame on gene 8, which is a further indicator of bat-origin CoVs.
T108 13667-13831 Sentence denotes However, the amino acid sequence of the tentative receptor-binding domain resembles that of SARS-CoV, indicating that these viruses might use the same receptor [5].
T109 13833-13866 Sentence denotes 6 Therapeutics/treatment options
T110 13867-14003 Sentence denotes The person-to-person transmission of COVID-19 infection led to the isolation of patients that were administered a variety of treatments.
T111 14004-14124 Sentence denotes At present, there are no specific antiviral drugs or vaccine against COVID-19 infection for potential therapy of humans.
T112 14125-14338 Sentence denotes The only option available is using broad-spectrum antiviral drugs like Nucleoside analogues and also HIV-protease inhibitors that could attenuate virus infection until the specific antiviral becomes available [7].
T113 14339-14453 Sentence denotes The treatment that have so far been attempted showed that 75 patients were administrated existing antiviral drugs.
T114 14454-14652 Sentence denotes The course of treatment included twice a day oral administration of 75 mg oseltamivir, 500 mg lopinavir, 500 mg ritonavir and the intravenous administration of 0·25 g ganciclovir for 3–14 days [26].
T115 14653-14804 Sentence denotes Another report showed that the broad-spectrum antiviral remdesivir and chloroquine are highly effective in the control of 2019-nCoV infection in vitro.
T116 14805-14891 Sentence denotes These antiviral compounds have been used in human patients with a safety track record.
T117 14892-14974 Sentence denotes Thus, these therapeutic agents can be considered to treat COVID-19 infection [27].
T118 14975-15050 Sentence denotes Furthermore, there are a number of other compounds that are in development.
T119 15051-15311 Sentence denotes These include the clinical candidate EIDD-2801 compound that has shown high therapeutic potential aganist seasonal and pandemic influenza virus infections and this represents another potential drug to be considered for the treatment of COVID-19 infection [28].
T120 15312-15596 Sentence denotes Along those lines, until more specific therapeutics become available, it is reasonable to consider more broad-spectrum antivirals that provide drug treatment options for COVID-19 infection include Lopinavir/Ritonavir, Neuraminidase inhibitors, peptide (EK1), RNA synthesis inhibitors.
T121 15597-15730 Sentence denotes It is clear however, that more research is urgently needed to identify novel chemotherapeutic drugs for treating COVID-19 infections.
T122 15731-15917 Sentence denotes In order to develop pre-and post-exposure prophylaxis against COVID-19, there is an urgent need to establish an animal model to replicate the severe disease currently observed in humans.
T123 15918-16198 Sentence denotes Several groups of scientists are currently working hard to develop a nonhuman primate model to study COVID-19 infection to establish fast track novel therapeutics and for the testing of potential vaccines in addition to providing a better understanding of virus-host interactions.
T124 16200-16257 Sentence denotes 7 Future directions to control the spread of the disease
T125 16258-16374 Sentence denotes Extensive measures to reduce person-to-person transmission of COVID-19 are required to control the current outbreak.
T126 16375-16546 Sentence denotes Special attention and efforts to protect or reduce transmission should be applied in susceptible populations including children, health care providers, and elderly people.
T127 16547-16706 Sentence denotes A guideline was published for the medical staff, healthcare providers, and, public health individuals and researchers who are interested in the 2019-nCoV [29].
T128 16707-16883 Sentence denotes The early death cases of COVID-19 outbreak occurred primarily in elderly people, possibly due to a weak immune system that permits faster progression of viral infection [8,12].
T129 16884-16997 Sentence denotes The public services and facilities should provide decontaminating reagents for cleaning hands on a routine basis.
T130 16998-17223 Sentence denotes Physical contact with wet and contaminated objects should be considered in dealing with the virus, especially agents such as faecal and urine samples that can potentially serve as an alternative route of transmission [15,16].
T131 17224-17394 Sentence denotes China and other countries including the US have implemented major prevention and control measures including travel screenings to control further spread of the virus [13].
T132 17395-17663 Sentence denotes Epidemiological changes in COVID-19 infection should be monitored taking into account potential routes of transmission and subclinical infections, in addition to the adaptation, evolution, and virus spread among humans and possible intermediate animals and reservoirs.
T133 17664-17739 Sentence denotes There remains a considerable number of questions that need to be addressed.
T134 17740-17920 Sentence denotes These include, but are not limited to, details about who and how many have been tested, what proportion of these turned positive and whether this rate remains constant or variable.
T135 17921-18048 Sentence denotes Very few paediatric cases have so far been reported; is this due to lack of testing or a true lack of infection/susceptibility?
T136 18049-18203 Sentence denotes Of the ones that have so far been tested, how many have developed severe disease and how many were tested positive but showed no clinical sign of disease?
T137 18204-18345 Sentence denotes There are some basic questions that would provide a framework for which more specific and detailed public health measures can be implemented.
T138 18347-18380 Sentence denotes Declaration of competing interest
T139 18381-18426 Sentence denotes The authors declare no conflicts of interest.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T3 453-462 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T4 1089-1109 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T5 1353-1365 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T6 1371-1393 Phenotype denotes cardiovascular disease http://purl.obolibrary.org/obo/HP_0001626
T7 3053-3062 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T8 5034-5039 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T9 5041-5046 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T10 5052-5059 Phenotype denotes fatigue http://purl.obolibrary.org/obo/HP_0012378
T11 5109-5117 Phenotype denotes headache http://purl.obolibrary.org/obo/HP_0002315
T12 5119-5130 Phenotype denotes haemoptysis http://purl.obolibrary.org/obo/HP_0002105
T13 5132-5141 Phenotype denotes diarrhoea http://purl.obolibrary.org/obo/HP_0002014
T14 5143-5151 Phenotype denotes dyspnoea http://purl.obolibrary.org/obo/HP_0002094
T15 5157-5168 Phenotype denotes lymphopenia http://purl.obolibrary.org/obo/HP_0001888
T16 5240-5249 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T17 5313-5333 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T18 5795-5814 Phenotype denotes pulmonary opacities http://purl.obolibrary.org/obo/HP_0031457
T19 6253-6264 Phenotype denotes sore throat http://purl.obolibrary.org/obo/HP_0033050
T20 6347-6356 Phenotype denotes diarrhoea http://purl.obolibrary.org/obo/HP_0002014
T21 6422-6431 Phenotype denotes diarrhoea http://purl.obolibrary.org/obo/HP_0002014
T22 6554-6559 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T23 6561-6570 Phenotype denotes dry cough http://purl.obolibrary.org/obo/HP_0031246
T24 6572-6579 Phenotype denotes dyspnea http://purl.obolibrary.org/obo/HP_0002094
T25 6822-6833 Phenotype denotes sore throat http://purl.obolibrary.org/obo/HP_0033050
T26 7014-7021 Phenotype denotes dyspnea http://purl.obolibrary.org/obo/HP_0002094
T27 7027-7036 Phenotype denotes hypoxemia http://purl.obolibrary.org/obo/HP_0012418
T28 7137-7146 Phenotype denotes diarrhoea http://purl.obolibrary.org/obo/HP_0002014
T29 8400-8405 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T30 8423-8428 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T31 8863-8898 Phenotype denotes High erythrocyte sedimentation rate http://purl.obolibrary.org/obo/HP_0003565
T32 9031-9040 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T33 10760-10768 Phenotype denotes coughing http://purl.obolibrary.org/obo/HP_0012735
T34 11195-11219 Phenotype denotes susceptible to infection http://purl.obolibrary.org/obo/HP_0002719
T35 11256-11265 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

2_test

Id Subject Object Predicate Lexical cue
32113704-32003000-131566395 2798-2800 32003000 denotes 10
32113704-32003000-131566395 2798-2800 32003000 denotes 10
32113704-23891402-131566396 6835-6837 23891402 denotes 15
32113704-23891402-131566396 6835-6837 23891402 denotes 15
32113704-12682352-131566397 6838-6840 12682352 denotes 16
32113704-12682352-131566397 6838-6840 12682352 denotes 16
32113704-23891402-131566398 7414-7416 23891402 denotes 15
32113704-23891402-131566398 7414-7416 23891402 denotes 15
32113704-12682352-131566399 7417-7419 12682352 denotes 16
32113704-12682352-131566399 7417-7419 12682352 denotes 16
32113704-32003000-131566400 10180-10182 32003000 denotes 10
32113704-32003000-131566400 10180-10182 32003000 denotes 10
32113704-31953166-131566401 12134-12136 31953166 denotes 23
32113704-31953166-131566401 12134-12136 31953166 denotes 23
32113704-30531947-131566402 12583-12585 30531947 denotes 24
32113704-30531947-131566402 12583-12585 30531947 denotes 24
32113704-32029004-131566403 16702-16704 32029004 denotes 29
32113704-32029004-131566403 16702-16704 32029004 denotes 29
32113704-23891402-131566404 17216-17218 23891402 denotes 15
32113704-23891402-131566404 17216-17218 23891402 denotes 15
32113704-12682352-131566405 17219-17221 12682352 denotes 16
32113704-12682352-131566405 17219-17221 12682352 denotes 16
32113704-31950516-55638553 612-613 31950516 denotes 2
32113704-31950516-55638553 612-613 31950516 denotes 2
32113704-31986264-55638554 1395-1396 31986264 denotes 6
32113704-31986264-55638554 1395-1396 31986264 denotes 6
32113704-31994742-55638555 2273-2274 31994742 denotes 8
32113704-31994742-55638555 2273-2274 31994742 denotes 8
32113704-31994742-55638556 4789-4790 31994742 denotes 8
32113704-31994742-55638556 4789-4790 31994742 denotes 8
32113704-31994742-55638557 4972-4973 31994742 denotes 8
32113704-31994742-55638557 4972-4973 31994742 denotes 8
32113704-31986264-55638558 5172-5173 31986264 denotes 6
32113704-31986264-55638558 5172-5173 31986264 denotes 6
32113704-31994742-55638559 5174-5175 31994742 denotes 8
32113704-31994742-55638559 5174-5175 31994742 denotes 8
32113704-32004066-55638560 5176-5178 32004066 denotes 13
32113704-32004066-55638560 5176-5178 32004066 denotes 13
32113704-31986264-55638561 5424-5425 31986264 denotes 6
32113704-31986264-55638561 5424-5425 31986264 denotes 6
32113704-31986264-55638562 6637-6638 31986264 denotes 6
32113704-31986264-55638562 6637-6638 31986264 denotes 6
32113704-23891402-55638563 6835-6837 23891402 denotes 15
32113704-23891402-55638563 6835-6837 23891402 denotes 15
32113704-12682352-55638564 6838-6840 12682352 denotes 16
32113704-12682352-55638564 6838-6840 12682352 denotes 16
32113704-23891402-55638565 7414-7416 23891402 denotes 15
32113704-23891402-55638565 7414-7416 23891402 denotes 15
32113704-12682352-55638566 7417-7419 12682352 denotes 16
32113704-12682352-55638566 7417-7419 12682352 denotes 16
32113704-31994742-55638567 8004-8005 31994742 denotes 8
32113704-31994742-55638567 8004-8005 31994742 denotes 8
32113704-31994742-55638568 8178-8179 31994742 denotes 8
32113704-31994742-55638568 8178-8179 31994742 denotes 8
32113704-31986264-55638569 9133-9134 31986264 denotes 6
32113704-31986264-55638569 9133-9134 31986264 denotes 6
32113704-31986264-55638570 9601-9602 31986264 denotes 6
32113704-31986264-55638570 9601-9602 31986264 denotes 6
32113704-31967321-55638571 10183-10185 31967321 denotes 18
32113704-31967321-55638571 10183-10185 31967321 denotes 18
32113704-32007145-55638572 10328-10330 32007145 denotes 19
32113704-32007145-55638572 10328-10330 32007145 denotes 19
32113704-32004066-55638573 10656-10658 32004066 denotes 13
32113704-32004066-55638573 10656-10658 32004066 denotes 13
32113704-31953166-55638574 12134-12136 31953166 denotes 23
32113704-31953166-55638574 12134-12136 31953166 denotes 23
32113704-32007145-55638575 12247-12249 32007145 denotes 19
32113704-32007145-55638575 12247-12249 32007145 denotes 19
32113704-32007145-55638576 12528-12530 32007145 denotes 19
32113704-32007145-55638576 12528-12530 32007145 denotes 19
32113704-30531947-55638577 12583-12585 30531947 denotes 24
32113704-30531947-55638577 12583-12585 30531947 denotes 24
32113704-32007143-55638578 14648-14650 32007143 denotes 26
32113704-32007143-55638578 14648-14650 32007143 denotes 26
32113704-32029004-55638579 16702-16704 32029004 denotes 29
32113704-32029004-55638579 16702-16704 32029004 denotes 29
32113704-31994742-55638580 16877-16878 31994742 denotes 8
32113704-31994742-55638580 16877-16878 31994742 denotes 8
32113704-23891402-55638581 17216-17218 23891402 denotes 15
32113704-23891402-55638581 17216-17218 23891402 denotes 15
32113704-12682352-55638582 17219-17221 12682352 denotes 16
32113704-12682352-55638582 17219-17221 12682352 denotes 16
32113704-32004066-55638583 17390-17392 32004066 denotes 13
32113704-32004066-55638583 17390-17392 32004066 denotes 13

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
69 16-27 Species denotes Coronavirus Tax:11118
70 85-90 Species denotes human Tax:9606
71 133-146 Species denotes coronaviruses Tax:11118
72 148-152 Species denotes CoVs Tax:11118
73 166-210 Species denotes severe acute respiratory syndrome (SARS)-CoV Tax:694009
74 253-262 Species denotes MERS)-CoV Tax:1335626
75 389-397 Species denotes patients Tax:9606
76 493-501 Species denotes patients Tax:9606
77 665-676 Species denotes Coronavirus Tax:11118
78 750-766 Species denotes New) Coronavirus Tax:2697049
79 219-251 Disease denotes Middle East respiratory syndrome MESH:D018352
80 453-462 Disease denotes pneumonia MESH:D011014
81 768-776 Disease denotes COVID-19 MESH:C000657245
91 4480-4486 Species denotes people Tax:9606
92 4550-4556 Species denotes people Tax:9606
93 4300-4308 Disease denotes COVID-19 MESH:C000657245
94 4309-4319 Disease denotes infections MESH:D007239
95 4324-4329 Disease denotes death MESH:D003643
96 4346-4356 Disease denotes Infections MESH:D007239
97 4362-4370 Disease denotes COVID-19 MESH:C000657245
98 4511-4520 Disease denotes infection MESH:D007239
99 4562-4566 Disease denotes died MESH:D003643
145 1051-1059 Species denotes patients Tax:9606
146 1136-1144 Species denotes patients Tax:9606
147 1195-1203 Species denotes patients Tax:9606
148 1299-1307 Species denotes patients Tax:9606
149 1405-1413 Species denotes patients Tax:9606
150 1582-1589 Species denotes patient Tax:9606
151 1644-1652 Species denotes patients Tax:9606
152 1761-1769 Species denotes patients Tax:9606
153 1841-1849 Species denotes patients Tax:9606
154 1933-1953 Species denotes 2019-new coronavirus Tax:2697049
155 2986-2993 Species denotes patient Tax:9606
156 3116-3121 Species denotes human Tax:9606
157 3125-3130 Species denotes human Tax:9606
158 3327-3344 Species denotes novel coronavirus Tax:2697049
159 3584-3605 Species denotes coronavirus/2019-ncov Tax:2697049
160 3740-3746 Species denotes people Tax:9606
161 3809-3815 Species denotes people Tax:9606
162 909-917 Disease denotes COVID-19 MESH:C000657245
163 918-928 Disease denotes infections MESH:D007239
164 1083-1118 Disease denotes acute respiratory distress syndrome MESH:D012128
165 1145-1149 Disease denotes died MESH:D003643
166 1255-1263 Disease denotes COVID-19 MESH:C000657245
167 1264-1273 Disease denotes infection MESH:D007239
168 1343-1351 Disease denotes diabetes MESH:D003920
169 1353-1365 Disease denotes hypertension MESH:D006973
170 1371-1393 Disease denotes cardiovascular disease MESH:D002318
171 1434-1442 Disease denotes infected MESH:D007239
172 1475-1495 Disease denotes nosocomial infection MESH:D003428
173 1523-1531 Disease denotes COVID-19 MESH:C000657245
174 1661-1669 Disease denotes infected MESH:D007239
175 1871-1879 Disease denotes infected MESH:D007239
176 1955-1963 Disease denotes COVID-19 MESH:C000657245
177 2106-2112 Disease denotes deaths MESH:D003643
178 2201-2209 Disease denotes infected MESH:D007239
179 2219-2227 Disease denotes COVID-19 MESH:C000657245
180 2265-2271 Disease denotes deaths MESH:D003643
181 2821-2829 Disease denotes COVID-19 MESH:C000657245
182 2830-2839 Disease denotes infection MESH:D007239
183 3053-3062 Disease denotes pneumonia MESH:D011014
184 3147-3155 Disease denotes COVID-19 MESH:C000657245
185 3417-3438 Disease denotes coronavirus infection MESH:D018352
186 3771-3780 Disease denotes infection MESH:D007239
187 3821-3825 Disease denotes died MESH:D003643
188 3879-3888 Disease denotes infection MESH:D007239
189 4040-4045 Disease denotes death MESH:D003643
209 6055-6070 Species denotes betacoronavirus Tax:694002
210 6280-6288 Species denotes patients Tax:9606
211 6382-6390 Species denotes MERS-CoV Tax:1335626
212 6394-6402 Species denotes SARS-CoV Tax:694009
213 6403-6411 Species denotes patients Tax:9606
214 5855-5876 Disease denotes respiratory disorders MESH:D012131
215 5887-5895 Disease denotes COVID-19 MESH:C000657245
216 5896-5905 Disease denotes infection MESH:D007239
217 5932-5940 Disease denotes COVID-19 MESH:C000657245
218 5941-5950 Disease denotes infection MESH:D007239
219 6033-6041 Disease denotes COVID-19 MESH:C000657245
220 6081-6089 Disease denotes COVID-19 MESH:C000657245
221 6226-6237 Disease denotes rhinorrhoea
222 6253-6264 Disease denotes sore throat MESH:D010608
223 6289-6297 Disease denotes infected MESH:D007239
224 6303-6311 Disease denotes COVID-19 MESH:C000657245
225 6322-6332 Disease denotes intestinal MESH:D007410
226 6347-6356 Disease denotes diarrhoea MESH:D003967
227 6422-6431 Disease denotes diarrhoea MESH:D003967
248 4836-4843 Species denotes patient Tax:9606
249 4862-4869 Species denotes patient Tax:9606
250 4908-4916 Species denotes patients Tax:9606
251 4597-4605 Disease denotes COVID-19 MESH:C000657245
252 4606-4615 Disease denotes infection MESH:D007239
253 4711-4719 Disease denotes COVID-19 MESH:C000657245
254 4732-4737 Disease denotes death MESH:D003643
255 5013-5021 Disease denotes COVID-19 MESH:C000657245
256 5034-5039 Disease denotes fever MESH:D005334
257 5041-5046 Disease denotes cough MESH:D003371
258 5052-5059 Disease denotes fatigue MESH:D005221
259 5109-5117 Disease denotes headache MESH:D006261
260 5132-5141 Disease denotes diarrhoea MESH:D003967
261 5143-5151 Disease denotes dyspnoea MESH:D004417
262 5157-5168 Disease denotes lymphopenia MESH:D008231
263 5240-5249 Disease denotes pneumonia MESH:D011014
264 5307-5342 Disease denotes acute respiratory distress syndrome MESH:D012128
265 5350-5364 Disease denotes cardiac injury MESH:D006331
266 5417-5422 Disease denotes death MESH:D003643
267 5631-5643 Disease denotes inflammation MESH:D007249
288 6530-6545 Species denotes betacoronavirus Tax:694002
289 7064-7072 Species denotes patients Tax:9606
290 7168-7176 Species denotes MERS-CoV Tax:1335626
291 7180-7188 Species denotes SARS-CoV Tax:694009
292 7189-7197 Species denotes patients Tax:9606
293 7391-7399 Species denotes patients Tax:9606
294 6509-6517 Disease denotes COVID-19 MESH:C000657245
295 6554-6559 Disease denotes fever MESH:D005334
296 6561-6570 Disease denotes dry cough MESH:D003371
297 6572-6579 Disease denotes dyspnea MESH:D004417
298 6650-6658 Disease denotes COVID-19 MESH:C000657245
299 6795-6806 Disease denotes rhinorrhoea
300 6822-6833 Disease denotes sore throat MESH:D010608
301 7014-7021 Disease denotes dyspnea MESH:D004417
302 7027-7036 Disease denotes hypoxemia MESH:D000860
303 7073-7081 Disease denotes infected MESH:D007239
304 7087-7095 Disease denotes COVID-19 MESH:C000657245
305 7106-7131 Disease denotes gastrointestinal symptoms MESH:D012817
306 7137-7146 Disease denotes diarrhoea MESH:D003967
307 7218-7229 Disease denotes GI distress MESH:D012128
315 7721-7729 Disease denotes COVID-19 MESH:C000657245
316 7933-7939 Disease denotes deaths MESH:D003643
317 7968-7973 Disease denotes death MESH:D003643
318 7996-8002 Disease denotes deaths MESH:D003643
319 8026-8031 Disease denotes death MESH:D003643
320 8065-8073 Disease denotes COVID-19 MESH:C000657245
321 8143-8149 Disease denotes deaths MESH:D003643
366 8789-8807 Gene denotes C-reactive protein Gene:1401
367 9258-9263 Gene denotes IL1-β Gene:3552
368 9265-9270 Gene denotes IL1RA Gene:3557
369 9272-9275 Gene denotes IL7 Gene:3574
370 9277-9280 Gene denotes IL8 Gene:3576
371 9282-9285 Gene denotes IL9 Gene:3578
372 9287-9291 Gene denotes IL10 Gene:3586
373 9299-9303 Gene denotes FGF2 Gene:2247
374 9305-9309 Gene denotes GCSF Gene:1440
375 9311-9316 Gene denotes GMCSF Gene:1437
376 9318-9322 Gene denotes IFNγ Gene:3458
377 9324-9328 Gene denotes IP10 Gene:3627
378 9330-9334 Gene denotes MCP1 Gene:6347
379 9336-9341 Gene denotes MIP1α Gene:6348
380 9343-9348 Gene denotes MIP1β Gene:6348
381 9350-9355 Gene denotes PDGFB Gene:5155
382 9357-9361 Gene denotes TNFα Gene:7124
383 9367-9372 Gene denotes VEGFA Gene:7422
384 9504-9507 Gene denotes IL2 Gene:3558
385 9509-9512 Gene denotes IL7 Gene:3574
386 9514-9518 Gene denotes IL10 Gene:3586
387 9520-9524 Gene denotes GCSF Gene:1440
388 9526-9530 Gene denotes IP10 Gene:3627
389 9532-9536 Gene denotes MCP1 Gene:6347
390 9538-9543 Gene denotes MIP1α Gene:6348
391 9549-9553 Gene denotes TNFα Gene:7124
392 8182-8190 Species denotes Patients Tax:9606
393 8379-8386 Species denotes patient Tax:9606
394 8508-8515 Species denotes patient Tax:9606
395 9211-9219 Species denotes patients Tax:9606
396 8191-8199 Disease denotes infected MESH:D007239
397 8205-8213 Disease denotes COVID-19 MESH:C000657245
398 8348-8356 Disease denotes COVID-19 MESH:C000657245
399 8400-8405 Disease denotes fever MESH:D005334
400 8423-8428 Disease denotes cough MESH:D003371
401 8600-8608 Disease denotes COVID-19 MESH:C000657245
402 8609-8618 Disease denotes infection MESH:D007239
403 8655-8665 Disease denotes leucopenia MESH:C536227
404 8961-8969 Disease denotes COVID-19 MESH:C000657245
405 8970-8979 Disease denotes infection MESH:D007239
406 9031-9040 Disease denotes pneumonia MESH:D011014
407 9117-9131 Disease denotes cardiac injury MESH:D006331
408 9225-9233 Disease denotes COVID-19 MESH:C000657245
409 9234-9243 Disease denotes infection MESH:D007239
434 9660-9666 Species denotes people Tax:9606
435 9959-9965 Species denotes humans Tax:9606
436 10127-10138 Species denotes coronavirus Tax:11118
437 10313-10326 Species denotes coronaviruses Tax:11118
438 10406-10412 Species denotes humans Tax:9606
439 10599-10605 Species denotes people Tax:9606
440 10840-10845 Species denotes women Tax:9606
441 10914-10925 Species denotes coronavirus Tax:11118
442 10991-10996 Species denotes child Tax:9606
443 9651-9659 Disease denotes infected MESH:D007239
444 9803-9811 Disease denotes zoonotic MESH:D015047
445 9826-9834 Disease denotes COVID-19 MESH:C000657245
446 9930-9939 Disease denotes infection MESH:D007239
447 10058-10066 Disease denotes COVID-19 MESH:C000657245
448 10217-10225 Disease denotes COVID-19 MESH:C000657245
449 10267-10300 Disease denotes severe acute respiratory syndrome MESH:D045169
450 10393-10401 Disease denotes COVID-19 MESH:C000657245
451 10512-10520 Disease denotes COVID-19 MESH:C000657245
452 10521-10530 Disease denotes infection MESH:D007239
453 10760-10768 Disease denotes coughing MESH:D003371
454 10789-10797 Disease denotes infected MESH:D007239
455 10896-10904 Disease denotes infected MESH:D007239
456 11210-11219 Disease denotes infection MESH:D007239
457 11256-11265 Disease denotes pneumonia MESH:D011014
467 11761-11792 Gene denotes angiotensin-converting enzyme 2 Gene:59272
468 11794-11798 Gene denotes ACE2 Gene:59272
469 12008-12012 Gene denotes ACE2 Gene:59272
470 11591-11596 Species denotes human Tax:9606
471 11600-11605 Species denotes human Tax:9606
472 11623-11631 Species denotes SARS-CoV Tax:694009
473 11916-11924 Species denotes SARS-CoV Tax:694009
474 11417-11432 Disease denotes viral infection MESH:D001102
475 11878-11886 Disease denotes COVID-19 MESH:C000657245
491 12115-12120 Species denotes β CoV Tax:694002
492 12202-12210 Species denotes patients Tax:9606
493 12336-12344 Species denotes patients Tax:9606
494 12401-12409 Species denotes beta-CoV Tax:694002
495 12492-12500 Species denotes SARS-CoV Tax:694009
496 12516-12524 Species denotes MERS-CoV Tax:1335626
497 12542-12550 Species denotes SARS-CoV Tax:694009
498 12555-12563 Species denotes MERS-CoV Tax:1335626
499 12687-12702 Species denotes betacoronavirus Tax:694002
500 12719-12727 Species denotes SARS-CoV Tax:694009
501 12742-12748 Species denotes humans Tax:9606
502 12101-12109 Disease denotes COVID-19 MESH:C000657245
503 12163-12171 Disease denotes COVID-19 MESH:C000657245
504 12450-12458 Disease denotes COVID-19 MESH:C000657245
505 12657-12665 Disease denotes COVID-19 MESH:C000657245
522 13377-13381 Gene denotes ACE2 Gene:59272
523 12825-12836 Species denotes coronavirus Tax:11118
524 12857-12863 Species denotes humans Tax:9606
525 13103-13111 Species denotes SARS-CoV Tax:694009
526 13151-13166 Species denotes betacoronavirus Tax:694002
527 13180-13186 Species denotes humans Tax:9606
528 13239-13252 Species denotes coronaviruses Tax:11118
529 13661-13665 Species denotes CoVs Tax:11118
530 13759-13767 Species denotes SARS-CoV Tax:694009
531 12779-12787 Disease denotes COVID-19 MESH:C000657245
532 12932-12940 Disease denotes COVID-19 MESH:C000657245
533 13063-13071 Disease denotes COVID-19 MESH:C000657245
534 13192-13200 Disease denotes COVID-19 MESH:C000657245
535 13298-13306 Disease denotes COVID-19 MESH:C000657245
536 13517-13525 Disease denotes COVID-19 MESH:C000657245
537 13526-13536 Disease denotes infections MESH:D007239
572 15530-15543 Gene denotes Neuraminidase Gene:4758
573 13947-13955 Species denotes patients Tax:9606
574 14117-14123 Species denotes humans Tax:9606
575 14400-14408 Species denotes patients Tax:9606
576 14849-14854 Species denotes human Tax:9606
577 14855-14863 Species denotes patients Tax:9606
578 15910-15916 Species denotes humans Tax:9606
579 14196-14206 Chemical denotes Nucleoside MESH:D009705
580 14528-14539 Chemical denotes oseltamivir MESH:D053139
581 14548-14557 Chemical denotes lopinavir MESH:D061466
582 14566-14575 Chemical denotes ritonavir MESH:D019438
583 14621-14632 Chemical denotes ganciclovir MESH:D015774
584 14709-14719 Chemical denotes remdesivir MESH:C000606551
585 14724-14735 Chemical denotes chloroquine MESH:D002738
586 15509-15528 Chemical denotes Lopinavir/Ritonavir MESH:C558899
587 13904-13912 Disease denotes COVID-19 MESH:C000657245
588 13913-13922 Disease denotes infection MESH:D007239
589 14073-14081 Disease denotes COVID-19 MESH:C000657245
590 14082-14091 Disease denotes infection MESH:D007239
591 14277-14286 Disease denotes infection MESH:D007239
592 14775-14794 Disease denotes 2019-nCoV infection MESH:C000657245
593 14950-14958 Disease denotes COVID-19 MESH:C000657245
594 14959-14968 Disease denotes infection MESH:D007239
595 15189-15205 Disease denotes virus infections MESH:D001102
596 15287-15295 Disease denotes COVID-19 MESH:C000657245
597 15296-15305 Disease denotes infection MESH:D007239
598 15482-15490 Disease denotes COVID-19 MESH:C000657245
599 15491-15500 Disease denotes infection MESH:D007239
600 15710-15718 Disease denotes COVID-19 MESH:C000657245
601 15719-15729 Disease denotes infections MESH:D007239
602 15793-15801 Disease denotes COVID-19 MESH:C000657245
603 15873-15887 Disease denotes severe disease MESH:D045169
604 16019-16027 Disease denotes COVID-19 MESH:C000657245
605 16028-16037 Disease denotes infection MESH:D007239
620 16494-16502 Species denotes children Tax:9606
621 16539-16545 Species denotes people Tax:9606
622 16691-16700 Species denotes 2019-nCoV Tax:2697049
623 16780-16786 Species denotes people Tax:9606
624 17607-17613 Species denotes humans Tax:9606
625 16320-16328 Disease denotes COVID-19 MESH:C000657245
626 16717-16722 Disease denotes death MESH:D003643
627 16732-16740 Disease denotes COVID-19 MESH:C000657245
628 16860-16875 Disease denotes viral infection MESH:D001102
629 17422-17430 Disease denotes COVID-19 MESH:C000657245
630 17431-17440 Disease denotes infection MESH:D007239
631 17530-17540 Disease denotes infections MESH:D007239
632 18023-18032 Disease denotes infection MESH:D007239
633 18115-18129 Disease denotes severe disease MESH:D045169