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PMC:7126544 / 6775-8416 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T12 139-143 Body_part denotes palm http://purl.org/sig/ont/fma/fma24920
T13 1093-1126 Body_part denotes the mucous membranes of the mouth http://purl.org/sig/ont/fma/fma59660
T14 1097-1113 Body_part denotes mucous membranes http://purl.org/sig/ont/fma/fma85355
T15 1121-1126 Body_part denotes mouth http://purl.org/sig/ont/fma/fma49184
T16 1128-1132 Body_part denotes nose http://purl.org/sig/ont/fma/fma46472
T17 1137-1141 Body_part denotes eyes http://purl.org/sig/ont/fma/fma54448
T18 1413-1417 Body_part denotes nose http://purl.org/sig/ont/fma/fma46472
T19 1421-1426 Body_part denotes mouth http://purl.org/sig/ont/fma/fma49184

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T2 1051-1055 Body_part denotes feet http://purl.obolibrary.org/obo/UBERON_0002387
T3 1097-1113 Body_part denotes mucous membranes http://purl.obolibrary.org/obo/UBERON_0000344
T4 1121-1126 Body_part denotes mouth http://purl.obolibrary.org/obo/UBERON_0000165
T5 1128-1132 Body_part denotes nose http://purl.obolibrary.org/obo/UBERON_0000004
T6 1320-1325 Body_part denotes hands http://purl.obolibrary.org/obo/UBERON_0002398
T7 1413-1417 Body_part denotes nose http://purl.obolibrary.org/obo/UBERON_0000004
T8 1421-1426 Body_part denotes mouth http://purl.obolibrary.org/obo/UBERON_0000165
T9 1467-1474 Body_part denotes excreta http://purl.obolibrary.org/obo/UBERON_0000174

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T55 73-81 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T56 73-77 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T57 249-257 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T58 249-253 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T59 309-333 Disease denotes COronaVIrus Disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T60 335-345 Disease denotes COVID-2019 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T63 98-102 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T64 197-203 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T65 375-376 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T66 401-402 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T67 460-466 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T68 499-500 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T69 637-639 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T70 700-705 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T71 805-807 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T72 821-826 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T73 1003-1008 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T74 1097-1113 http://purl.obolibrary.org/obo/UBERON_0000344 denotes mucous membranes
T75 1121-1126 http://www.ebi.ac.uk/efo/EFO_0000825 denotes mouth
T76 1128-1132 http://www.ebi.ac.uk/efo/EFO_0000828 denotes nose
T77 1137-1141 http://www.ebi.ac.uk/efo/EFO_0000827 denotes eyes
T78 1169-1170 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T79 1302-1307 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T80 1372-1378 http://purl.obolibrary.org/obo/BFO_0000030 denotes object
T81 1413-1417 http://www.ebi.ac.uk/efo/EFO_0000828 denotes nose
T82 1421-1426 http://www.ebi.ac.uk/efo/EFO_0000825 denotes mouth
T83 1455-1456 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T84 1610-1615 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T15 1576-1584 Chemical denotes carriers http://purl.obolibrary.org/obo/CHEBI_78059

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T4 903-911 Phenotype denotes coughing http://purl.obolibrary.org/obo/HP_0012735

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T58 0-29 Sentence denotes 2.2 Coronavirus transmission
T59 30-72 Sentence denotes CoVs can transmit across species barriers.
T60 73-212 Sentence denotes SARS-CoV originated from bats of the Hipposideridae family, using palm civets as intermediary hosts before dissemination to humans [15,16].
T61 213-347 Sentence denotes The earliest patients infected with SARS-CoV-2 in Wuhan ultimately caused the epidemic known as COronaVIrus Disease 2019 (COVID-2019).
T62 348-484 Sentence denotes Some of these patients had a history of contact with a wholesale seafood market in the early stages, suggesting animal-to-person spread.
T63 485-654 Sentence denotes Subsequently, a large number of patients reportedly did not have exposure to the markets, suggesting the development of person-to-person spread [[17], [18], [19], [20]].
T64 655-816 Sentence denotes There are three primary ways to transmit the virus, including close person-to-person contact, aerosol transmission, and transmission by touch [[21], [22], [23]].
T65 817-924 Sentence denotes The virus is thought to be transmitted to other people by respiratory droplets during coughing or sneezing.
T66 925-1168 Sentence denotes Droplet spread can occur when an infected person sneezes or coughs, whereupon virus containing droplets are propelled up to 3 feet through the air and are deposited on the mucous membranes of the mouth, nose, or eyes of persons who are nearby.
T67 1169-1261 Sentence denotes A recent report suggests that transmission through the ocular surface is also possible [24].
T68 1262-1475 Sentence denotes The other avenues for the spread of the virus are shaking hands with an infected person, touching an infected object/surface, frequent touching of the nose or mouth or coming into contact with a patient's excreta.
T69 1476-1641 Sentence denotes Another avenue is through “hidden transmission” [19], in which asymptomatic infected individuals or carriers unknowingly transmit the virus to unsuspecting contacts.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
185 5-16 Species denotes Coronavirus Tax:11118
196 30-34 Species denotes CoVs Tax:11118
197 73-81 Species denotes SARS-CoV Tax:694009
198 197-203 Species denotes humans Tax:9606
199 226-234 Species denotes patients Tax:9606
200 249-259 Species denotes SARS-CoV-2 Tax:2697049
201 362-370 Species denotes patients Tax:9606
202 517-525 Species denotes patients Tax:9606
203 235-243 Disease denotes infected MESH:D007239
204 309-333 Disease denotes COronaVIrus Disease 2019 MESH:C000657245
205 335-345 Disease denotes COVID-2019 MESH:C000657245
218 865-871 Species denotes people Tax:9606
219 1145-1152 Species denotes persons Tax:9606
220 1457-1464 Species denotes patient Tax:9606
221 875-886 Species denotes respiratory Tax:12814
222 903-911 Disease denotes coughing MESH:D003371
223 958-966 Disease denotes infected MESH:D007239
224 985-991 Disease denotes coughs MESH:D003371
225 1121-1126 Disease denotes mouth MESH:D009059
226 1334-1342 Disease denotes infected MESH:D007239
227 1363-1371 Disease denotes infected MESH:D007239
228 1421-1426 Disease denotes mouth MESH:D009059
229 1552-1560 Disease denotes infected MESH:D007239

2_test

Id Subject Object Predicate Lexical cue
32143990-20071579-55637356 205-207 20071579 denotes 15
32143990-16195424-55637357 208-210 16195424 denotes 16
32143990-31950516-55637358 631-633 31950516 denotes 17
32143990-31967321-55637359 637-639 31967321 denotes 18
32143990-31986261-55637360 643-645 31986261 denotes 19
32143990-32054045-55637361 649-651 32054045 denotes 20
32143990-32035510-55637362 1257-1259 32035510 denotes 24
32143990-31986261-55637363 1525-1527 31986261 denotes 19