PMC:7126544 / 6023-6773
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T2 | 105-108 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T3 | 183-189 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T4 | 196-199 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T5 | 406-422 | Body_part | denotes | structural genes | http://purl.org/sig/ont/fma/fma74402 |
| T6 | 440-446 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T7 | 544-551 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T8 | 625-630 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T9 | 644-652 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T10 | 703-710 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T11 | 728-731 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 350-354 | Body_part | denotes | tail | http://purl.obolibrary.org/obo/UBERON_0002415 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T54 | 58-59 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T55 | 200-207 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
| T56 | 209-211 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
| T57 | 309-317 | http://purl.obolibrary.org/obo/UBERON_0000158 | denotes | Membrane |
| T58 | 347-348 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T59 | 350-354 | http://purl.obolibrary.org/obo/UBERON_0002415 | denotes | tail |
| T60 | 376-381 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | genes |
| T61 | 417-422 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | genes |
| T62 | 625-630 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T11 | 150-155 | Chemical | denotes | bases | http://purl.obolibrary.org/obo/CHEBI_22695 |
| T12 | 544-551 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T13 | 644-652 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T14 | 703-710 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T10 | 519-531 | http://purl.obolibrary.org/obo/GO_0009405 | denotes | pathogenesis |
| T11 | 603-630 | http://purl.obolibrary.org/obo/GO_0046718 | denotes | viral entry into host cells |
| T12 | 609-624 | http://purl.obolibrary.org/obo/GO_0044409 | denotes | entry into host |
| T13 | 677-691 | http://purl.obolibrary.org/obo/GO_0019068 | denotes | viral assembly |
| T14 | 728-741 | http://purl.obolibrary.org/obo/GO_0032774 | denotes | RNA synthesis |
| T15 | 732-741 | http://purl.obolibrary.org/obo/GO_0009058 | denotes | synthesis |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T51 | 0-33 | Sentence | denotes | 2.1 Biology of the coronaviruses |
| T52 | 34-156 | Sentence | denotes | CoVs are enveloped with a non-segmented, positive-sense, single-strand RNA, with size ranging from 26,000 to 37,000 bases. |
| T53 | 157-213 | Sentence | denotes | This is the largest known genome among RNA viruses [11]. |
| T54 | 214-258 | Sentence | denotes | The genomic structure of CoVs is as follows: |
| T55 | 259-355 | Sentence | denotes | 5′-leader-UTR-replicase-S (Spike)–E (Envelope)-M (Membrane)-N (Nucleocapsid)-3′UTRpoly (A) tail. |
| T56 | 356-537 | Sentence | denotes | There are accessory genes interspersed within the structural genes at the 3′ end of genome [12], some of which have been shown to play an important roles in viral pathogenesis [13]. |
| T57 | 538-750 | Sentence | denotes | The S protein is responsible for receptor-binding and subsequent viral entry into host cells, the M and E proteins play important roles in viral assembly, and the N protein is necessary for RNA synthesis [12,14]. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 181 | 296-304 | Gene | denotes | Envelope | Gene:43740570 |
| 182 | 34-38 | Species | denotes | CoVs | Tax:11118 |
| 183 | 239-243 | Species | denotes | CoVs | Tax:11118 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32143990-16339739-55637352 | 209-211 | 16339739 | denotes | 11 |
| 32143990-25720466-55637353 | 448-450 | 25720466 | denotes | 12 |
| 32143990-22704621-55637354 | 533-535 | 22704621 | denotes | 13 |
| 32143990-25720466-55637355 | 743-745 | 25720466 | denotes | 12 |