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PMC:7126544 / 48395-49259 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T146 6-18 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T147 262-273 Body_part denotes cytoplasmic http://purl.org/sig/ont/fma/fma66835
T148 686-693 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T149 782-789 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T422 115-118 Disease denotes NTD http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075
T424 328-336 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T425 328-332 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T426 440-448 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T427 440-444 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T428 827-835 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T429 827-831 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T430 850-858 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T431 850-854 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T407 31-33 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T408 38-40 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T409 38-40 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T410 55-57 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T411 75-76 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T412 77-83 http://purl.obolibrary.org/obo/SO_0000418 denotes signal
T413 84-91 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T414 139-141 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T415 139-141 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T416 180-187 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T417 282-284 http://purl.obolibrary.org/obo/PR_000005794 denotes CP
T418 314-316 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T419 314-316 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T420 434-439 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T421 450-453 http://purl.obolibrary.org/obo/CLO_0054060 denotes 102
T422 460-462 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T423 460-462 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T424 533-541 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T137 6-18 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T138 38-40 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T139 84-91 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T140 139-141 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T141 180-187 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T142 189-191 Chemical denotes FP http://purl.obolibrary.org/obo/CHEBI_74750
T143 253-255 Chemical denotes TM http://purl.obolibrary.org/obo/CHEBI_55460|http://purl.obolibrary.org/obo/CHEBI_74861
T145 282-284 Chemical denotes CP http://purl.obolibrary.org/obo/CHEBI_3380|http://purl.obolibrary.org/obo/CHEBI_73461
T147 314-316 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T148 403-405 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T149 419-421 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T150 460-462 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T151 523-532 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T152 533-541 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T153 686-693 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T154 720-728 Chemical denotes electron http://purl.obolibrary.org/obo/CHEBI_10545
T155 746-748 Chemical denotes EM http://purl.obolibrary.org/obo/CHEBI_73507
T156 782-789 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T399 0-50 Sentence denotes Spike glycoprotein consists of S1 and S2 subunits.
T400 51-296 Sentence denotes The S1 subunit contains a signal peptide, an N-terminal domain (NTD) and RBD, while the S2 subunit includes the conserved fusion peptide (FP), heptad repeat 1 and 2 (HR1 and HR2), transmembrane domain (TM), and cytoplasmic domain (CP) [102,105].
T401 297-455 Sentence denotes Furthermore, the S2 subunit of SARS-CoV-2 is highly conserved and shares 99% similarity with those of Bat-SL-CoVZC45, Bat-SL-CoVZC21 and human SARS-CoV [102].
T402 456-648 Sentence denotes The S2 subunit is therefore targeted when screening broad spectrum antiviral peptides, which is an important piece of information that can be used to develop preventive and treatment measures.
T403 649-864 Sentence denotes Most recently, the 3D structure of S protein was elucidated using Cryo-electron microscopy (Cryo-EM), and the RBD structure of the S protein is closer to the central location of SARS-CoV-2 compared to SARS-CoV [97].

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1304 0-5 Gene denotes Spike Gene:43740568
1305 328-338 Species denotes SARS-CoV-2 Tax:2697049
1306 434-439 Species denotes human Tax:9606
1307 440-448 Species denotes SARS-CoV Tax:694009
1308 827-837 Species denotes SARS-CoV-2 Tax:2697049
1309 850-858 Species denotes SARS-CoV Tax:694009