PMC:7126544 / 20075-21589 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"http://pubannotation.org/docs/sourcedb/PMC/sourceid/7126544","sourcedb":"PMC","sourceid":"7126544","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7126544","text":"A cluster of cases of viral pneumonia of unknown etiology, now known as SARS-CoV-2 pneumonia, occurred in Wuhan, Hubei Province and were reported to health authorities on the December 29, 2019 [60]. This outbreak was associated with a large seafood and animal market [61]. Further investigations are ongoing to determine the origin of the infection. To date, many reports have described possible original and intermediate hosts (Fig. 1 ). Researchers found that the SARS-CoV-2 showed a higher sequence homology to Bat-CoV-RaTG13 that was previously detected in Rhinolophus affinis from Yunnan Province than Bat-SL-CoVZC21 and Bat-SL-CoVZC45, which suggested that the Chinese chrysanthemum bat is the origin of SARS-CoV-2. More recently, the pangolin was believed to be the likely intermediate host due to the fact that there appeared to be approximately 99% sequence homology between SARS-Co V-2 and the consensus sequence derived from \u003e1000 metagenomic samples from the pangolin species [62].\nFig. 1 The origin and inter-host timeline of SARS-CoV-2. All the information is derived from published data. Journal name: (a) Emerging Microbes \u0026 Infections, (b) bioRvix, (c) J Med Virol, (d) The Lancet, (e) the New England Journal of Medicine, (f) J Virol, (g) Chin Med J (Engl), (h) https://www.scau.edu.cn/2020/0207/c1300a219015/page.htm. Bat-ZC21: Bat-SL-CoVZC21, GenBank Accession MG772934; Bat-ZC45: Bat-SL-CoVZC45, GenBank Accession MG772933; Bat-RaTG13: yun-nan-Bat-CoV-RaTG13, GISAID accession EPI_ISL_402,131.","divisions":[{"label":"label","span":{"begin":994,"end":1000}}],"tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T33","span":{"begin":892,"end":895},"obj":"Body_part"},{"id":"T35","span":{"begin":1257,"end":1261},"obj":"Body_part"}],"attributes":[{"id":"A33","pred":"fma_id","subj":"T33","obj":"http://purl.org/sig/ont/fma/fma13443"},{"id":"A34","pred":"fma_id","subj":"T33","obj":"http://purl.org/sig/ont/fma/fma68615"},{"id":"A35","pred":"fma_id","subj":"T35","obj":"http://purl.org/sig/ont/fma/fma46495"},{"subj":"T33","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T35","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T14","span":{"begin":1257,"end":1261},"obj":"Body_part"}],"attributes":[{"id":"A14","pred":"uberon_id","subj":"T14","obj":"http://purl.obolibrary.org/obo/UBERON_0008199"},{"subj":"T14","pred":"source","obj":"LitCovid-PD-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T162","span":{"begin":22,"end":37},"obj":"Disease"},{"id":"T163","span":{"begin":28,"end":37},"obj":"Disease"},{"id":"T164","span":{"begin":72,"end":80},"obj":"Disease"},{"id":"T165","span":{"begin":72,"end":76},"obj":"Disease"},{"id":"T166","span":{"begin":83,"end":92},"obj":"Disease"},{"id":"T167","span":{"begin":339,"end":348},"obj":"Disease"},{"id":"T168","span":{"begin":466,"end":474},"obj":"Disease"},{"id":"T169","span":{"begin":466,"end":470},"obj":"Disease"},{"id":"T170","span":{"begin":710,"end":718},"obj":"Disease"},{"id":"T171","span":{"begin":710,"end":714},"obj":"Disease"},{"id":"T172","span":{"begin":884,"end":888},"obj":"Disease"},{"id":"T173","span":{"begin":1039,"end":1047},"obj":"Disease"},{"id":"T174","span":{"begin":1039,"end":1043},"obj":"Disease"}],"attributes":[{"id":"A162","pred":"mondo_id","subj":"T162","obj":"http://purl.obolibrary.org/obo/MONDO_0006012"},{"id":"A163","pred":"mondo_id","subj":"T163","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"},{"id":"A164","pred":"mondo_id","subj":"T164","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A165","pred":"mondo_id","subj":"T165","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A166","pred":"mondo_id","subj":"T166","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"},{"id":"A167","pred":"mondo_id","subj":"T167","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A168","pred":"mondo_id","subj":"T168","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A169","pred":"mondo_id","subj":"T169","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A170","pred":"mondo_id","subj":"T170","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A171","pred":"mondo_id","subj":"T171","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A172","pred":"mondo_id","subj":"T172","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A173","pred":"mondo_id","subj":"T173","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A174","pred":"mondo_id","subj":"T174","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"subj":"T162","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T163","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T164","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T165","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T166","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T167","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T168","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T169","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T170","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T171","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T172","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T173","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T174","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T170","span":{"begin":0,"end":1},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T171","span":{"begin":233,"end":234},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T172","span":{"begin":253,"end":259},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_33208"},{"id":"T173","span":{"begin":484,"end":485},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T174","span":{"begin":689,"end":695},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"},{"id":"T175","span":{"begin":1118,"end":1119},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T176","span":{"begin":1154,"end":1155},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"}],"attributes":[{"subj":"T170","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T171","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T172","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T173","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T174","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T175","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T176","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T29","span":{"begin":611,"end":613},"obj":"Chemical"},{"id":"T30","span":{"begin":630,"end":632},"obj":"Chemical"},{"id":"T31","span":{"begin":889,"end":891},"obj":"Chemical"},{"id":"T32","span":{"begin":1351,"end":1353},"obj":"Chemical"},{"id":"T33","span":{"begin":1405,"end":1407},"obj":"Chemical"}],"attributes":[{"id":"A29","pred":"chebi_id","subj":"T29","obj":"http://purl.obolibrary.org/obo/CHEBI_74815"},{"id":"A30","pred":"chebi_id","subj":"T30","obj":"http://purl.obolibrary.org/obo/CHEBI_74815"},{"id":"A31","pred":"chebi_id","subj":"T31","obj":"http://purl.obolibrary.org/obo/CHEBI_27638"},{"id":"A32","pred":"chebi_id","subj":"T32","obj":"http://purl.obolibrary.org/obo/CHEBI_74815"},{"id":"A33","pred":"chebi_id","subj":"T33","obj":"http://purl.obolibrary.org/obo/CHEBI_74815"},{"subj":"T29","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T30","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T31","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T32","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T33","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-PD-HP","denotations":[{"id":"T17","span":{"begin":28,"end":37},"obj":"Phenotype"},{"id":"T18","span":{"begin":83,"end":92},"obj":"Phenotype"}],"attributes":[{"id":"A17","pred":"hp_id","subj":"T17","obj":"http://purl.obolibrary.org/obo/HP_0002090"},{"id":"A18","pred":"hp_id","subj":"T18","obj":"http://purl.obolibrary.org/obo/HP_0002090"},{"subj":"T17","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T18","pred":"source","obj":"LitCovid-PD-HP"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T174","span":{"begin":0,"end":198},"obj":"Sentence"},{"id":"T175","span":{"begin":199,"end":272},"obj":"Sentence"},{"id":"T176","span":{"begin":273,"end":349},"obj":"Sentence"},{"id":"T177","span":{"begin":350,"end":438},"obj":"Sentence"},{"id":"T178","span":{"begin":439,"end":721},"obj":"Sentence"},{"id":"T179","span":{"begin":722,"end":993},"obj":"Sentence"},{"id":"T180","span":{"begin":994,"end":1050},"obj":"Sentence"},{"id":"T181","span":{"begin":1051,"end":1102},"obj":"Sentence"},{"id":"T182","span":{"begin":1103,"end":1336},"obj":"Sentence"},{"id":"T183","span":{"begin":1337,"end":1346},"obj":"Sentence"},{"id":"T184","span":{"begin":1347,"end":1400},"obj":"Sentence"},{"id":"T185","span":{"begin":1401,"end":1514},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T174","pred":"source","obj":"LitCovid-sentences"},{"subj":"T175","pred":"source","obj":"LitCovid-sentences"},{"subj":"T176","pred":"source","obj":"LitCovid-sentences"},{"subj":"T177","pred":"source","obj":"LitCovid-sentences"},{"subj":"T178","pred":"source","obj":"LitCovid-sentences"},{"subj":"T179","pred":"source","obj":"LitCovid-sentences"},{"subj":"T180","pred":"source","obj":"LitCovid-sentences"},{"subj":"T181","pred":"source","obj":"LitCovid-sentences"},{"subj":"T182","pred":"source","obj":"LitCovid-sentences"},{"subj":"T183","pred":"source","obj":"LitCovid-sentences"},{"subj":"T184","pred":"source","obj":"LitCovid-sentences"},{"subj":"T185","pred":"source","obj":"LitCovid-sentences"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"432","span":{"begin":1269,"end":1273},"obj":"Gene"},{"id":"433","span":{"begin":1039,"end":1049},"obj":"Species"},{"id":"434","span":{"begin":1469,"end":1472},"obj":"Species"},{"id":"435","span":{"begin":1141,"end":1151},"obj":"Disease"},{"id":"444","span":{"begin":466,"end":476},"obj":"Species"},{"id":"445","span":{"begin":518,"end":521},"obj":"Species"},{"id":"446","span":{"begin":561,"end":580},"obj":"Species"},{"id":"447","span":{"begin":710,"end":720},"obj":"Species"},{"id":"448","span":{"begin":884,"end":895},"obj":"Species"},{"id":"449","span":{"begin":22,"end":37},"obj":"Disease"},{"id":"450","span":{"begin":72,"end":92},"obj":"Disease"},{"id":"451","span":{"begin":339,"end":348},"obj":"Disease"}],"attributes":[{"id":"A432","pred":"tao:has_database_id","subj":"432","obj":"Gene:9941"},{"id":"A433","pred":"tao:has_database_id","subj":"433","obj":"Tax:2697049"},{"id":"A434","pred":"tao:has_database_id","subj":"434","obj":"Tax:11118"},{"id":"A435","pred":"tao:has_database_id","subj":"435","obj":"MESH:D007239"},{"id":"A444","pred":"tao:has_database_id","subj":"444","obj":"Tax:2697049"},{"id":"A445","pred":"tao:has_database_id","subj":"445","obj":"Tax:11118"},{"id":"A446","pred":"tao:has_database_id","subj":"446","obj":"Tax:59477"},{"id":"A447","pred":"tao:has_database_id","subj":"447","obj":"Tax:2697049"},{"id":"A448","pred":"tao:has_database_id","subj":"448","obj":"Tax:2697049"},{"id":"A450","pred":"tao:has_database_id","subj":"450","obj":"MESH:C000657245"},{"id":"A451","pred":"tao:has_database_id","subj":"451","obj":"MESH:D007239"},{"subj":"432","pred":"source","obj":"LitCovid-PubTator"},{"subj":"433","pred":"source","obj":"LitCovid-PubTator"},{"subj":"434","pred":"source","obj":"LitCovid-PubTator"},{"subj":"435","pred":"source","obj":"LitCovid-PubTator"},{"subj":"444","pred":"source","obj":"LitCovid-PubTator"},{"subj":"445","pred":"source","obj":"LitCovid-PubTator"},{"subj":"446","pred":"source","obj":"LitCovid-PubTator"},{"subj":"447","pred":"source","obj":"LitCovid-PubTator"},{"subj":"448","pred":"source","obj":"LitCovid-PubTator"},{"subj":"449","pred":"source","obj":"LitCovid-PubTator"},{"subj":"450","pred":"source","obj":"LitCovid-PubTator"},{"subj":"451","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#ec93a0","default":true},{"id":"LitCovid-PD-UBERON","color":"#93baec"},{"id":"LitCovid-PD-MONDO","color":"#d4ec93"},{"id":"LitCovid-PD-CLO","color":"#ea93ec"},{"id":"LitCovid-PD-CHEBI","color":"#93ecd0"},{"id":"LitCovid-PD-HP","color":"#ecb693"},{"id":"LitCovid-sentences","color":"#9c93ec"},{"id":"LitCovid-PubTator","color":"#a3ec93"}]}]}}