PMC:7126544 / 12081-16322
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T28 | 3005-3009 | Body_part | denotes | body | http://purl.org/sig/ont/fma/fma256135 |
| T29 | 3023-3039 | Body_part | denotes | white blood cell | http://purl.org/sig/ont/fma/fma62852 |
| T30 | 3035-3039 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T31 | 3050-3055 | Body_part | denotes | chest | http://purl.org/sig/ont/fma/fma9576 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T12 | 3029-3034 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T13 | 3050-3055 | Body_part | denotes | chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T98 | 46-50 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T99 | 119-152 | Disease | denotes | severe acute respiratory syndrome | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T100 | 154-158 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T101 | 174-178 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T102 | 192-200 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T103 | 192-196 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T104 | 240-249 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T105 | 516-520 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T106 | 809-811 | Disease | denotes | he | http://purl.obolibrary.org/obo/MONDO_0017319 |
| T107 | 999-1007 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T108 | 999-1003 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T109 | 1382-1390 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T110 | 1382-1386 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T111 | 1508-1512 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T112 | 1587-1597 | Disease | denotes | infectious | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T113 | 1604-1612 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T114 | 1604-1608 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T115 | 1974-1978 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T116 | 2082-2086 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T117 | 2201-2205 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T118 | 2285-2289 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T119 | 2833-2837 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T120 | 3166-3170 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T121 | 3254-3258 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T122 | 3452-3456 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T123 | 3573-3577 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T124 | 3671-3675 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T125 | 3677-3686 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T126 | 3825-3829 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T127 | 4125-4134 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T114 | 3-4 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T115 | 79-82 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T116 | 336-342 | http://purl.obolibrary.org/obo/NCBITaxon_33208 | denotes | animal |
| T117 | 612-617 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T118 | 645-646 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T119 | 718-719 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T120 | 828-833 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T121 | 1145-1147 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
| T122 | 1767-1768 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T123 | 1842-1843 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T124 | 1928-1930 | http://purl.obolibrary.org/obo/CLO_0053799 | denotes | 45 |
| T125 | 2282-2284 | http://purl.obolibrary.org/obo/CLO_0050510 | denotes | 18 |
| T126 | 2344-2353 | http://purl.obolibrary.org/obo/SO_0000418 | denotes | signaling |
| T127 | 2479-2480 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T128 | 2972-2973 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T129 | 3029-3034 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
| T130 | 3035-3039 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T131 | 3050-3055 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | chest |
| T132 | 3139-3147 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | actively |
| T133 | 3239-3240 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T134 | 3377-3378 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T135 | 3520-3525 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T136 | 3973-3978 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T137 | 4218-4220 | http://purl.obolibrary.org/obo/CLO_0053799 | denotes | 45 |
| T138 | 4224-4232 | http://purl.obolibrary.org/obo/CLO_0001013 | denotes | 46], [47 |
| T139 | 4224-4232 | http://purl.obolibrary.org/obo/CLO_0052464 | denotes | 46], [47 |
| T140 | 4236-4238 | http://purl.obolibrary.org/obo/CLO_0001382 | denotes | 48 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16 | 2344-2353 | http://purl.obolibrary.org/obo/GO_0023052 | denotes | signaling |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T12 | 240-249 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T13 | 2856-2861 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
| T14 | 2954-2959 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
| T15 | 3068-3073 | Phenotype | denotes | Fever | http://purl.obolibrary.org/obo/HP_0001945 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T99 | 0-75 | Sentence | denotes | 3 A historical review of the epidemiology of SARS and how it was contained |
| T100 | 76-207 | Sentence | denotes | It has been 17 years since the outbreak of severe acute respiratory syndrome (SARS) caused by the SARS coronavirus (SARS-CoV) [43]. |
| T101 | 208-312 | Sentence | denotes | This highly contagious atypical pneumonia first appeared in Guangdong Province, China, in November 2002. |
| T102 | 313-411 | Sentence | denotes | The initial cases were animal handlers in Guangzhou city having close contact with wild game food. |
| T103 | 412-491 | Sentence | denotes | It was suggested that civets could serve as an intermediate amplification host. |
| T104 | 492-618 | Sentence | denotes | Three months later, the SARS pandemic was rapidly and globally disseminated due to person-to-person transmission of the virus. |
| T105 | 619-778 | Sentence | denotes | On the February 21, 2003, a medical professor from Foshan in Guangdong province who was considered a “super-spreader” went to Hong Kong to visit his relatives. |
| T106 | 779-914 | Sentence | denotes | During his stay in Hong Kong, he transmitted the virus to 2 family members, 4 health care workers (HCWs) and 12 other nearby residents. |
| T107 | 915-1081 | Sentence | denotes | Because of international travel and transmission to HCWs, these patients spread the SARS-CoV to Hong Kong and other countries including Vietnam, Singapore and Canada. |
| T108 | 1082-1159 | Sentence | denotes | Eventually, 8422 people were infected in 32 countries and 919 (11%) died [9]. |
| T109 | 1160-1266 | Sentence | denotes | In China, 5328 cases were reported and 349 (6.5%) perished between November 16, 2002 and June 3, 2003 [9]. |
| T110 | 1267-1391 | Sentence | denotes | At the beginning of the outbreaks in Hong Kong, mainland China and other areas, we were unfamiliar with the deadly SARS-CoV. |
| T111 | 1392-1467 | Sentence | denotes | It took about 3 months to complete the sequencing of this coronavirus [44]. |
| T112 | 1468-1613 | Sentence | denotes | The global success in the fight against SARS was partly based on epidemiological and biological characteristics of the infectious agent SARS-CoV. |
| T113 | 1614-1807 | Sentence | denotes | An understanding of transmission patterns and the ability to diagnose and confirm affected patients ultimately led to effective containment measures and a slowdown in the spread of the disease. |
| T114 | 1808-1932 | Sentence | denotes | Due to the lack of medications or a vaccine, the options for early intervention were limited to public health measures [45]. |
| T115 | 1933-2037 | Sentence | denotes | The steps that led to the containment of SARS can be illustrated by the events that occurred in Beijing. |
| T116 | 2038-2118 | Sentence | denotes | Beijing experienced the largest outbreak of SARS beginning on the March 5, 2003. |
| T117 | 2119-2241 | Sentence | denotes | The outbreak peaked within 6 weeks on the April 25, 2003 when 173 newly suspected SARS cases were hospitalized daily [46]. |
| T118 | 2242-2389 | Sentence | denotes | On the June 20, 2003, the last batch of 18 SARS patients recovered and were discharged from hospital, signaling the end of the pandemic in Beijing. |
| T119 | 2390-2520 | Sentence | denotes | The prompt resolution of the outbreak in Beijing was attributed to the rapid adoption of a series of effective control measures.1. |
| T120 | 2521-2623 | Sentence | denotes | Thousands of local and military health workers were deployed for emergency management of the outbreak. |
| T121 | 2624-2769 | Sentence | denotes | Large quantities of emergency supplies including personal protective equipment (PPE) and medical apparat were sent to front-line medical sectors. |
| T122 | 2770-2838 | Sentence | denotes | These people and materials were key to winning the war against SARS. |
| T123 | 2839-2841 | Sentence | denotes | 2. |
| T124 | 2842-2933 | Sentence | denotes | More than 100 fever clinics were set up in all secondary and tertiary hospitals in Beijing. |
| T125 | 2934-3067 | Sentence | denotes | People visiting the fever clinics had a physical examination including body temperature, white blood cell count and chest radiograph. |
| T126 | 3068-3131 | Sentence | denotes | Fever clinics played an important role in screening and triage. |
| T127 | 3132-3134 | Sentence | denotes | 3. |
| T128 | 3135-3218 | Sentence | denotes | All actively ill patients with SARS were concentrated in designated hospital wards. |
| T129 | 3219-3346 | Sentence | denotes | On the May 1, 2003, a new 1000-bed SARS hospital (Xiaotangshan Hospital, Beijing) was built and put into operation immediately. |
| T130 | 3347-3544 | Sentence | denotes | The advantages of having such a facility was that it was more conducive to the centralized management of SARS patients, and at the same time, it reduced transmission of the virus to healthy people. |
| T131 | 3545-3547 | Sentence | denotes | 4. |
| T132 | 3548-3714 | Sentence | denotes | During the period of the SARS outbreak, more than 60,000 HCWs received medical training in the management of patients with SARS, infection control and the use of PPE. |
| T133 | 3715-3717 | Sentence | denotes | 5. |
| T134 | 3718-3979 | Sentence | denotes | Multiple measures were taken to reduce person-to-person transmission, including isolation of patients with SARS, tracing and quarantine of close contacts, transit site surveillance and closing poorly maintained facilities that could enhance spread of the virus. |
| T135 | 3980-3982 | Sentence | denotes | 6. |
| T136 | 3983-4022 | Sentence | denotes | Information dissemination was critical. |
| T137 | 4023-4241 | Sentence | denotes | Timely and accurate reporting of the status of the epidemic and scientific guidance on prevention and infection control played important roles in stabilizing people and overcoming the epidemic [[45], [46], [47], [48]]. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 333 | 174-190 | Species | denotes | SARS coronavirus | Tax:694009 |
| 334 | 192-200 | Species | denotes | SARS-CoV | Tax:694009 |
| 335 | 979-987 | Species | denotes | patients | Tax:9606 |
| 336 | 999-1007 | Species | denotes | SARS-CoV | Tax:694009 |
| 337 | 1099-1105 | Species | denotes | people | Tax:9606 |
| 338 | 119-152 | Disease | denotes | severe acute respiratory syndrome | MESH:D045169 |
| 339 | 240-249 | Disease | denotes | pneumonia | MESH:D011014 |
| 340 | 1111-1119 | Disease | denotes | infected | MESH:D007239 |
| 341 | 1150-1154 | Disease | denotes | died | MESH:D003643 |
| 346 | 1382-1390 | Species | denotes | SARS-CoV | Tax:694009 |
| 347 | 1450-1461 | Species | denotes | coronavirus | Tax:11118 |
| 348 | 1604-1612 | Species | denotes | SARS-CoV | Tax:694009 |
| 349 | 1705-1713 | Species | denotes | patients | Tax:9606 |
| 351 | 2776-2782 | Species | denotes | people | Tax:9606 |
| 356 | 2934-2940 | Species | denotes | People | Tax:9606 |
| 357 | 2856-2861 | Disease | denotes | fever | MESH:D005334 |
| 358 | 2954-2959 | Disease | denotes | fever | MESH:D005334 |
| 359 | 3068-3073 | Disease | denotes | Fever | MESH:D005334 |
| 363 | 3152-3160 | Species | denotes | patients | Tax:9606 |
| 364 | 3457-3465 | Species | denotes | patients | Tax:9606 |
| 365 | 3537-3543 | Species | denotes | people | Tax:9606 |
| 368 | 3657-3665 | Species | denotes | patients | Tax:9606 |
| 369 | 3677-3686 | Disease | denotes | infection | MESH:D007239 |
| 371 | 3811-3819 | Species | denotes | patients | Tax:9606 |
| 374 | 4181-4187 | Species | denotes | people | Tax:9606 |
| 375 | 4125-4134 | Disease | denotes | infection | MESH:D007239 |
| 377 | 2290-2298 | Species | denotes | patients | Tax:9606 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32143990-12711465-55637383 | 203-205 | 12711465 | denotes | 43 |
| 32143990-12773318-55637384 | 1463-1465 | 12773318 | denotes | 44 |
| 32143990-15306395-55637385 | 1928-1930 | 15306395 | denotes | 45 |
| 32143990-15306395-55637386 | 4218-4220 | 15306395 | denotes | 45 |
| 32143990-14519236-55637387 | 4236-4238 | 14519236 | denotes | 48 |