> top > docs > PMC:7120970 > spans > 77-3886 > annotations

PMC:7120970 / 77-3886 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
6 19-36 Species denotes novel coronavirus Tax:2697049
7 38-47 Species denotes 2019-nCoV Tax:2697049
8 526-533 Species denotes patient Tax:9606
9 395-414 Disease denotes 2019-nCoV infection MESH:C000657245
15 587-594 Species denotes Patient Tax:9606
16 616-627 Disease denotes sore throat MESH:D010608
17 641-649 Disease denotes myalgias MESH:D063806
18 692-697 Disease denotes fever MESH:D005334
19 753-758 Disease denotes cough MESH:D003371
23 1233-1242 Species denotes 2019-nCoV Tax:2697049
24 1264-1271 Species denotes patient Tax:9606
25 1145-1154 Disease denotes infection MESH:D007239
28 1908-1917 Species denotes 2019-nCoV Tax:2697049
29 1567-1586 Disease denotes Infectious Diseases MESH:D003141
41 2244-2253 Species denotes 2019-nCoV Tax:2697049
42 2255-2263 Species denotes Patients Tax:9606
43 2299-2307 Species denotes patients Tax:9606
44 2314-2321 Species denotes Patient Tax:9606
45 2351-2358 Species denotes patient Tax:9606
46 2374-2382 Species denotes patients Tax:9606
47 2405-2412 Species denotes Patient Tax:9606
48 2467-2475 Species denotes patients Tax:9606
49 2636-2644 Species denotes patients Tax:9606
50 2491-2510 Disease denotes 2019-nCoV infection MESH:C000657245
51 2537-2556 Disease denotes infectious diseases MESH:D003141
55 2889-2896 Species denotes patient Tax:9606
56 2697-2716 Disease denotes 2019-nCoV infection MESH:C000657245
57 2804-2813 Disease denotes infection MESH:D007239
66 2973-2980 Species denotes persons Tax:9606
67 3137-3146 Species denotes 2019-nCoV Tax:2697049
68 3194-3201 Species denotes patient Tax:9606
69 3203-3210 Species denotes Patient Tax:9606
70 3257-3266 Species denotes 2019-nCoV Tax:2697049
71 3305-3314 Species denotes 2019-nCoV Tax:2697049
72 3343-3350 Species denotes patient Tax:9606
73 3006-3025 Disease denotes 2019-nCoV infection MESH:C000657245
76 3432-3440 Species denotes patients Tax:9606
77 3724-3732 Species denotes patients Tax:9606

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 621-627 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T2 827-831 Body_part denotes back http://purl.org/sig/ont/fma/fma25056
T3 1188-1192 Body_part denotes back http://purl.org/sig/ont/fma/fma25056
T4 1304-1312 Body_part denotes Appendix http://purl.org/sig/ont/fma/fma14542
T5 1846-1852 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T6 2087-2093 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T7 3158-3164 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 621-627 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T2 1846-1852 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T3 2087-2093 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T4 3158-3164 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T2 395-414 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T3 405-414 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T4 616-627 Disease denotes sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T5 792-794 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T6 885-887 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T7 1145-1154 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T8 1567-1577 Disease denotes Infectious http://purl.obolibrary.org/obo/MONDO_0005550
T9 1660-1662 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T10 2491-2510 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T11 2501-2510 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T12 2537-2547 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T13 2697-2716 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T14 2707-2716 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T15 2804-2813 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T16 3006-3025 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T17 3016-3025 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T18 3633-3642 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 121-126 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T2 187-192 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T3 353-354 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 385-386 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 535-536 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T6 614-615 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T7 690-691 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 740-741 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 851-853 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T10 915-916 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 1013-1014 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T12 1077-1079 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T13 1213-1219 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T14 1428-1430 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T15 2033-2034 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T16 2224-2230 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T17 2528-2529 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 3038-3039 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 3151-3152 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 3179-3180 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 1181-1187 http://purl.obolibrary.org/obo/GO_0060361 denotes flight
T2 1942-1955 http://purl.obolibrary.org/obo/GO_0003968 denotes transcriptase
T3 1942-1955 http://purl.obolibrary.org/obo/GO_0003899 denotes transcriptase

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T2 0-14 Sentence denotes To the Editor:
T3 15-367 Sentence denotes The novel coronavirus (2019-nCoV) from Wuhan is currently causing concern in the medical community as the virus is spreading around the world.1 Since identification of the virus in late December 2019, the number of cases from China that have been imported into other countries is on the rise, and the epidemiologic picture is changing on a daily basis.
T4 368-534 Sentence denotes We are reporting a case of 2019-nCoV infection acquired outside Asia in which transmission appears to have occurred during the incubation period in the index patient.
T5 535-670 Sentence denotes A 33-year-old otherwise healthy German businessman (Patient 1) became ill with a sore throat, chills, and myalgias on January 24, 2020.
T6 671-759 Sentence denotes The following day, a fever of 39.1°C (102.4°F) developed, along with a productive cough.
T7 760-854 Sentence denotes By the evening of the next day, he started feeling better and went back to work on January 27.
T8 855-990 Sentence denotes Before the onset of symptoms, he had attended meetings with a Chinese business partner at his company near Munich on January 20 and 21.
T9 991-1080 Sentence denotes The business partner, a Shanghai resident, had visited Germany between January 19 and 22.
T10 1081-1416 Sentence denotes During her stay, she had been well with no signs or symptoms of infection but had become ill on her flight back to China, where she tested positive for 2019-nCoV on January 26 (index patient in Figure 1) (see Supplementary Appendix, available at NEJM.org, for details on the timeline of symptom development leading to hospitalization).
T11 1417-1475 Sentence denotes On January 27, she informed the company about her illness.
T12 1476-1642 Sentence denotes Contact tracing was started, and the above-mentioned colleague was sent to the Division of Infectious Diseases and Tropical Medicine in Munich for further assessment.
T13 1643-1685 Sentence denotes At presentation, he was afebrile and well.
T14 1686-1812 Sentence denotes He reported no previous or chronic illnesses and had no history of foreign travel within 14 days before the onset of symptoms.
T15 1813-2166 Sentence denotes Two nasopharyngeal swabs and one sputum sample were obtained and were found to be positive for 2019-nCoV on quantitative reverse-transcriptase–polymerase-chain-reaction (qRT-PCR) assay.2 Follow-up qRT-PCR assay revealed a high viral load of 108 copies per milliliter in his sputum during the following days, with the last available result on January 29.
T16 2167-2289 Sentence denotes On January 28, three additional employees at the company tested positive for 2019-nCoV (Patients 2 through 4 in Figure 1).
T17 2290-2415 Sentence denotes Of these patients, only Patient 2 had contact with the index patient; the other two patients had contact only with Patient 1.
T18 2416-2600 Sentence denotes In accordance with the health authorities, all the patients with confirmed 2019-nCoV infection were admitted to a Munich infectious diseases unit for clinical monitoring and isolation.
T19 2601-2683 Sentence denotes So far, none of the four confirmed patients show signs of severe clinical illness.
T20 2684-2771 Sentence denotes This case of 2019-nCoV infection was diagnosed in Germany and transmitted outside Asia.
T21 2772-2945 Sentence denotes However, it is notable that the infection appears to have been transmitted during the incubation period of the index patient, in whom the illness was brief and nonspecific.3
T22 2946-3102 Sentence denotes The fact that asymptomatic persons are potential sources of 2019-nCoV infection may warrant a reassessment of transmission dynamics of the current outbreak.
T23 3103-3282 Sentence denotes In this context, the detection of 2019-nCoV and a high sputum viral load in a convalescent patient (Patient 1) arouse concern about prolonged shedding of 2019-nCoV after recovery.
T24 3283-3398 Sentence denotes Yet, the viability of 2019-nCoV detected on qRT-PCR in this patient remains to be proved by means of viral culture.
T25 3399-3544 Sentence denotes Despite these concerns, all four patients who were seen in Munich have had mild cases and were hospitalized primarily for public health purposes.
T26 3545-3809 Sentence denotes Since hospital capacities are limited — in particular, given the concurrent peak of the influenza season in the northern hemisphere — research is needed to determine whether such patients can be treated with appropriate guidance and oversight outside the hospital.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 616-627 Phenotype denotes sore throat http://purl.obolibrary.org/obo/HP_0033050
T2 629-635 Phenotype denotes chills http://purl.obolibrary.org/obo/HP_0025143
T3 641-649 Phenotype denotes myalgias http://purl.obolibrary.org/obo/HP_0003326
T4 692-697 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T5 742-758 Phenotype denotes productive cough http://purl.obolibrary.org/obo/HP_0031245