PMC:7116472 / 42459-45396 JSONTXT

Annnotations TAB JSON ListView MergeView

    LitCovid-PubTator

    {"project":"LitCovid-PubTator","denotations":[{"id":"762","span":{"begin":2854,"end":2872},"obj":"Gene"},{"id":"763","span":{"begin":60,"end":68},"obj":"Species"},{"id":"764","span":{"begin":110,"end":118},"obj":"Species"},{"id":"765","span":{"begin":2712,"end":2716},"obj":"Chemical"},{"id":"766","span":{"begin":2778,"end":2788},"obj":"Chemical"},{"id":"767","span":{"begin":153,"end":162},"obj":"Disease"},{"id":"768","span":{"begin":795,"end":810},"obj":"Disease"},{"id":"769","span":{"begin":869,"end":891},"obj":"Disease"},{"id":"770","span":{"begin":948,"end":966},"obj":"Disease"},{"id":"771","span":{"begin":1042,"end":1055},"obj":"Disease"},{"id":"772","span":{"begin":1192,"end":1217},"obj":"Disease"},{"id":"773","span":{"begin":1223,"end":1229},"obj":"Disease"},{"id":"774","span":{"begin":1287,"end":1295},"obj":"Disease"},{"id":"775","span":{"begin":2024,"end":2028},"obj":"Disease"}],"attributes":[{"id":"A762","pred":"tao:has_database_id","subj":"762","obj":"Gene:1401"},{"id":"A763","pred":"tao:has_database_id","subj":"763","obj":"Tax:9606"},{"id":"A764","pred":"tao:has_database_id","subj":"764","obj":"Tax:9606"},{"id":"A765","pred":"tao:has_database_id","subj":"765","obj":"MESH:D014508"},{"id":"A766","pred":"tao:has_database_id","subj":"766","obj":"MESH:D003404"},{"id":"A767","pred":"tao:has_database_id","subj":"767","obj":"MESH:D003643"},{"id":"A768","pred":"tao:has_database_id","subj":"768","obj":"MESH:D006331"},{"id":"A769","pred":"tao:has_database_id","subj":"769","obj":"MESH:D051436"},{"id":"A770","pred":"tao:has_database_id","subj":"770","obj":"MESH:D009369"},{"id":"A771","pred":"tao:has_database_id","subj":"771","obj":"MESH:D008107"},{"id":"A772","pred":"tao:has_database_id","subj":"772","obj":"MESH:D008171"},{"id":"A773","pred":"tao:has_database_id","subj":"773","obj":"MESH:D001249"},{"id":"A774","pred":"tao:has_database_id","subj":"774","obj":"MESH:D003920"},{"id":"A775","pred":"tao:has_database_id","subj":"775","obj":"MESH:D003128"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"characteristics Derivation cohort validation cohort\nNo of patients (%) or median (iQR) Total No (%) No of patients (%) or median (iQR) total No (%)\nMortality in hospital 11 426 (32.2) 35 463 (100.0) 6729 (30.1) 22 361 (100.0)\nAge (years)\n    \u003c50 4876 (13.8) 35 277 (99.5) 2808 (12.6) 22 361 (100.0)\n    50-69 10 183 (28.9) — 5762 (25.8) —\n    70-79 8017 (22.7) — 4951 (22.1) —\n    ≥80 12 201 (34.6) — 8840 (39.5) —\nSex at birth\n    Female 14 741 (41.7) 35 356 (99.7) 10 178 (45.6) 22 319 (99.8)\nEthnicity\n    White 26 300 (82.2) 31 987 (90.2) 16 831 (84.9) 19 818 (88.6)\n    South Asian 1647 (5.1) — 811 (4.1) —\n    East Asian 271 (0.8) — 140 (0.7) —\n    Black 1256 (3.9) — 769 (3.9) —\n    Other ethnic minority 2513 (7.9) — 1267 (6.4) —\nChronic cardiac disease 10 513 (31.8) 33 090 (93.3) 7019 (34.0) 20 616 (92.2)\nChronic kidney disease 5653 (17.2) 32 834 (92.6) 3769 (18.4) 20 444 (91.4)\nMalignant neoplasm 3312 (10.2) 32 556 (91.8) 2187 (10.8) 20 297 (90.8)\nModerate or severe liver disease 604 (1.9) 32 538 (91.8) 434 (2.1) 20 218 (90.4)\nObesity (clinician defined) 3414 (11.4) 29 829 (84.1) 2234 (12.2) 18 304 (81.9)\nChronic pulmonary disease (not asthma) 5830 (17.7) 32 990 (93.0) 3737 (18.2) 20 502 (91.7)\nDiabetes (type 1 and 2) 8487 (26.0) 32 622 (92.0) 4275 (21.9) 19 511 (87.3)\nNo of comorbidities\n    0 8497 (24.0) 35 463 (100.0) 5098 (22.8) 22 361 (100.0)\n    1 9941 (28.0) — 6114 (27.3) —\n    ≥2 17 025 (48.0) — 11 149 (49.9) —\nRespiratory rate (breaths/min) 22.0 (9.0) 33 330 (94.0) 20.0 (8.0) 20 970 (93.8)\nOxygen saturation (%) 94.0 (6.0) 33 696 (95.0) 94.0 (5.0) 21 197 (94.8)\nSystolic blood pressure (mm Hg) 124.0 (33.0) 33 637 (94.9) 129.0 (33.0) 21 073 (94.2)\nDiastolic blood pressure (mm Hg) 70.0 (19.0) 33 568 (94.7) 73.0 (20.0) 21 026 (94.0)\nTemperature (°C) 37.3 (1.5) 33 467 (94.4) 37.1 (1.5) 21 139 (94.5)\nHeart rate (bpm) 90.0 (27.0) 33 405 (94.2) 90.0 (28.0) 20 991 (93.9)\nGlasgow coma scale score 15.0 (0.0) 30 819 (86.9) 15.0 (0.0) 20 015 (89.5)\nHaemoglobin (g/L) 129.0 (30.0) 29 924 (84.4) 127.0 (31.0) 18 480 (82.6)\nWhite blood cell count (109/L) 7.4 (5.1) 29 740 (83.9) 7.6 (5.3) 18 362 (82.1)\nNeutrophil count (109/L) 5.6 (4.6) 29 594 (83.5) 5.8 (4.9) 18 354 (82.1)\nLymphocyte count (109/L) 0.9 (0.7) 29 553 (83.3) 0.9 (0.7) 18 348 (82.1)\nPlatelet count (109/L) 216.0 (120.0) 29 582 (83.4) 223.0 (126.0) 18 281 (81.8)\nSodium (mmol/L) 137.0 (6.0) 29 522 (83.2) 137.0 (6.0) 18 409 (82.3)\nPotassium (mmol/L) 4.1 (0.8) 27 224 (76.8) 4.1 (0.8) 16 926 (75.7)\nTotal bilirubin (mg/dL) 10.0 (7.0) 24 446 (68.9) 10.0 (7.0) 15 404 (68.9)\nUrea (mmol/L) 7.0 (6.3) 26 122 (73.7) 7.3 (6.8) 16 863 (75.4)\nCreatinine (pmol/L) 86.0 (53.0) 29 439 (83.0) 86.0 (56.0) 18 225 (81.5)\nC reactive protein (mg/L) 84.9 (122.0) 27 856 (78.5) 78.0 (120.0) 17 119 (76.6)"}

    LitCovid-sentences

    {"project":"LitCovid-sentences","denotations":[{"id":"T248","span":{"begin":0,"end":53},"obj":"Sentence"},{"id":"T249","span":{"begin":54,"end":152},"obj":"Sentence"},{"id":"T250","span":{"begin":153,"end":234},"obj":"Sentence"},{"id":"T251","span":{"begin":235,"end":246},"obj":"Sentence"},{"id":"T252","span":{"begin":247,"end":311},"obj":"Sentence"},{"id":"T253","span":{"begin":312,"end":355},"obj":"Sentence"},{"id":"T254","span":{"begin":356,"end":397},"obj":"Sentence"},{"id":"T255","span":{"begin":398,"end":439},"obj":"Sentence"},{"id":"T256","span":{"begin":440,"end":452},"obj":"Sentence"},{"id":"T257","span":{"begin":453,"end":523},"obj":"Sentence"},{"id":"T258","span":{"begin":524,"end":533},"obj":"Sentence"},{"id":"T259","span":{"begin":534,"end":603},"obj":"Sentence"},{"id":"T260","span":{"begin":604,"end":648},"obj":"Sentence"},{"id":"T261","span":{"begin":649,"end":691},"obj":"Sentence"},{"id":"T262","span":{"begin":692,"end":730},"obj":"Sentence"},{"id":"T263","span":{"begin":731,"end":786},"obj":"Sentence"},{"id":"T264","span":{"begin":787,"end":868},"obj":"Sentence"},{"id":"T265","span":{"begin":869,"end":947},"obj":"Sentence"},{"id":"T266","span":{"begin":948,"end":1022},"obj":"Sentence"},{"id":"T267","span":{"begin":1023,"end":1107},"obj":"Sentence"},{"id":"T268","span":{"begin":1108,"end":1191},"obj":"Sentence"},{"id":"T269","span":{"begin":1192,"end":1286},"obj":"Sentence"},{"id":"T270","span":{"begin":1287,"end":1366},"obj":"Sentence"},{"id":"T271","span":{"begin":1367,"end":1386},"obj":"Sentence"},{"id":"T272","span":{"begin":1387,"end":1450},"obj":"Sentence"},{"id":"T273","span":{"begin":1451,"end":1488},"obj":"Sentence"},{"id":"T274","span":{"begin":1489,"end":1531},"obj":"Sentence"},{"id":"T275","span":{"begin":1532,"end":1616},"obj":"Sentence"},{"id":"T276","span":{"begin":1617,"end":1692},"obj":"Sentence"},{"id":"T277","span":{"begin":1693,"end":1782},"obj":"Sentence"},{"id":"T278","span":{"begin":1783,"end":1871},"obj":"Sentence"},{"id":"T279","span":{"begin":1872,"end":1942},"obj":"Sentence"},{"id":"T280","span":{"begin":1943,"end":2015},"obj":"Sentence"},{"id":"T281","span":{"begin":2016,"end":2094},"obj":"Sentence"},{"id":"T282","span":{"begin":2095,"end":2170},"obj":"Sentence"},{"id":"T283","span":{"begin":2171,"end":2253},"obj":"Sentence"},{"id":"T284","span":{"begin":2254,"end":2330},"obj":"Sentence"},{"id":"T285","span":{"begin":2331,"end":2407},"obj":"Sentence"},{"id":"T286","span":{"begin":2408,"end":2490},"obj":"Sentence"},{"id":"T287","span":{"begin":2491,"end":2562},"obj":"Sentence"},{"id":"T288","span":{"begin":2563,"end":2633},"obj":"Sentence"},{"id":"T289","span":{"begin":2634,"end":2711},"obj":"Sentence"},{"id":"T290","span":{"begin":2712,"end":2777},"obj":"Sentence"},{"id":"T291","span":{"begin":2778,"end":2853},"obj":"Sentence"},{"id":"T292","span":{"begin":2854,"end":2937},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"characteristics Derivation cohort validation cohort\nNo of patients (%) or median (iQR) Total No (%) No of patients (%) or median (iQR) total No (%)\nMortality in hospital 11 426 (32.2) 35 463 (100.0) 6729 (30.1) 22 361 (100.0)\nAge (years)\n    \u003c50 4876 (13.8) 35 277 (99.5) 2808 (12.6) 22 361 (100.0)\n    50-69 10 183 (28.9) — 5762 (25.8) —\n    70-79 8017 (22.7) — 4951 (22.1) —\n    ≥80 12 201 (34.6) — 8840 (39.5) —\nSex at birth\n    Female 14 741 (41.7) 35 356 (99.7) 10 178 (45.6) 22 319 (99.8)\nEthnicity\n    White 26 300 (82.2) 31 987 (90.2) 16 831 (84.9) 19 818 (88.6)\n    South Asian 1647 (5.1) — 811 (4.1) —\n    East Asian 271 (0.8) — 140 (0.7) —\n    Black 1256 (3.9) — 769 (3.9) —\n    Other ethnic minority 2513 (7.9) — 1267 (6.4) —\nChronic cardiac disease 10 513 (31.8) 33 090 (93.3) 7019 (34.0) 20 616 (92.2)\nChronic kidney disease 5653 (17.2) 32 834 (92.6) 3769 (18.4) 20 444 (91.4)\nMalignant neoplasm 3312 (10.2) 32 556 (91.8) 2187 (10.8) 20 297 (90.8)\nModerate or severe liver disease 604 (1.9) 32 538 (91.8) 434 (2.1) 20 218 (90.4)\nObesity (clinician defined) 3414 (11.4) 29 829 (84.1) 2234 (12.2) 18 304 (81.9)\nChronic pulmonary disease (not asthma) 5830 (17.7) 32 990 (93.0) 3737 (18.2) 20 502 (91.7)\nDiabetes (type 1 and 2) 8487 (26.0) 32 622 (92.0) 4275 (21.9) 19 511 (87.3)\nNo of comorbidities\n    0 8497 (24.0) 35 463 (100.0) 5098 (22.8) 22 361 (100.0)\n    1 9941 (28.0) — 6114 (27.3) —\n    ≥2 17 025 (48.0) — 11 149 (49.9) —\nRespiratory rate (breaths/min) 22.0 (9.0) 33 330 (94.0) 20.0 (8.0) 20 970 (93.8)\nOxygen saturation (%) 94.0 (6.0) 33 696 (95.0) 94.0 (5.0) 21 197 (94.8)\nSystolic blood pressure (mm Hg) 124.0 (33.0) 33 637 (94.9) 129.0 (33.0) 21 073 (94.2)\nDiastolic blood pressure (mm Hg) 70.0 (19.0) 33 568 (94.7) 73.0 (20.0) 21 026 (94.0)\nTemperature (°C) 37.3 (1.5) 33 467 (94.4) 37.1 (1.5) 21 139 (94.5)\nHeart rate (bpm) 90.0 (27.0) 33 405 (94.2) 90.0 (28.0) 20 991 (93.9)\nGlasgow coma scale score 15.0 (0.0) 30 819 (86.9) 15.0 (0.0) 20 015 (89.5)\nHaemoglobin (g/L) 129.0 (30.0) 29 924 (84.4) 127.0 (31.0) 18 480 (82.6)\nWhite blood cell count (109/L) 7.4 (5.1) 29 740 (83.9) 7.6 (5.3) 18 362 (82.1)\nNeutrophil count (109/L) 5.6 (4.6) 29 594 (83.5) 5.8 (4.9) 18 354 (82.1)\nLymphocyte count (109/L) 0.9 (0.7) 29 553 (83.3) 0.9 (0.7) 18 348 (82.1)\nPlatelet count (109/L) 216.0 (120.0) 29 582 (83.4) 223.0 (126.0) 18 281 (81.8)\nSodium (mmol/L) 137.0 (6.0) 29 522 (83.2) 137.0 (6.0) 18 409 (82.3)\nPotassium (mmol/L) 4.1 (0.8) 27 224 (76.8) 4.1 (0.8) 16 926 (75.7)\nTotal bilirubin (mg/dL) 10.0 (7.0) 24 446 (68.9) 10.0 (7.0) 15 404 (68.9)\nUrea (mmol/L) 7.0 (6.3) 26 122 (73.7) 7.3 (6.8) 16 863 (75.4)\nCreatinine (pmol/L) 86.0 (53.0) 29 439 (83.0) 86.0 (56.0) 18 225 (81.5)\nC reactive protein (mg/L) 84.9 (122.0) 27 856 (78.5) 78.0 (120.0) 17 119 (76.6)"}

    LitCovid-PD-HP

    {"project":"LitCovid-PD-HP","denotations":[{"id":"T32","span":{"begin":869,"end":891},"obj":"Phenotype"},{"id":"T33","span":{"begin":958,"end":966},"obj":"Phenotype"},{"id":"T34","span":{"begin":1042,"end":1055},"obj":"Phenotype"},{"id":"T35","span":{"begin":1108,"end":1115},"obj":"Phenotype"},{"id":"T36","span":{"begin":1223,"end":1229},"obj":"Phenotype"},{"id":"T37","span":{"begin":2024,"end":2028},"obj":"Phenotype"}],"attributes":[{"id":"A32","pred":"hp_id","subj":"T32","obj":"http://purl.obolibrary.org/obo/HP_0012622"},{"id":"A33","pred":"hp_id","subj":"T33","obj":"http://purl.obolibrary.org/obo/HP_0002664"},{"id":"A34","pred":"hp_id","subj":"T34","obj":"http://purl.obolibrary.org/obo/HP_0001392"},{"id":"A35","pred":"hp_id","subj":"T35","obj":"http://purl.obolibrary.org/obo/HP_0001513"},{"id":"A36","pred":"hp_id","subj":"T36","obj":"http://purl.obolibrary.org/obo/HP_0002099"},{"id":"A37","pred":"hp_id","subj":"T37","obj":"http://purl.obolibrary.org/obo/HP_0001259"}],"text":"characteristics Derivation cohort validation cohort\nNo of patients (%) or median (iQR) Total No (%) No of patients (%) or median (iQR) total No (%)\nMortality in hospital 11 426 (32.2) 35 463 (100.0) 6729 (30.1) 22 361 (100.0)\nAge (years)\n    \u003c50 4876 (13.8) 35 277 (99.5) 2808 (12.6) 22 361 (100.0)\n    50-69 10 183 (28.9) — 5762 (25.8) —\n    70-79 8017 (22.7) — 4951 (22.1) —\n    ≥80 12 201 (34.6) — 8840 (39.5) —\nSex at birth\n    Female 14 741 (41.7) 35 356 (99.7) 10 178 (45.6) 22 319 (99.8)\nEthnicity\n    White 26 300 (82.2) 31 987 (90.2) 16 831 (84.9) 19 818 (88.6)\n    South Asian 1647 (5.1) — 811 (4.1) —\n    East Asian 271 (0.8) — 140 (0.7) —\n    Black 1256 (3.9) — 769 (3.9) —\n    Other ethnic minority 2513 (7.9) — 1267 (6.4) —\nChronic cardiac disease 10 513 (31.8) 33 090 (93.3) 7019 (34.0) 20 616 (92.2)\nChronic kidney disease 5653 (17.2) 32 834 (92.6) 3769 (18.4) 20 444 (91.4)\nMalignant neoplasm 3312 (10.2) 32 556 (91.8) 2187 (10.8) 20 297 (90.8)\nModerate or severe liver disease 604 (1.9) 32 538 (91.8) 434 (2.1) 20 218 (90.4)\nObesity (clinician defined) 3414 (11.4) 29 829 (84.1) 2234 (12.2) 18 304 (81.9)\nChronic pulmonary disease (not asthma) 5830 (17.7) 32 990 (93.0) 3737 (18.2) 20 502 (91.7)\nDiabetes (type 1 and 2) 8487 (26.0) 32 622 (92.0) 4275 (21.9) 19 511 (87.3)\nNo of comorbidities\n    0 8497 (24.0) 35 463 (100.0) 5098 (22.8) 22 361 (100.0)\n    1 9941 (28.0) — 6114 (27.3) —\n    ≥2 17 025 (48.0) — 11 149 (49.9) —\nRespiratory rate (breaths/min) 22.0 (9.0) 33 330 (94.0) 20.0 (8.0) 20 970 (93.8)\nOxygen saturation (%) 94.0 (6.0) 33 696 (95.0) 94.0 (5.0) 21 197 (94.8)\nSystolic blood pressure (mm Hg) 124.0 (33.0) 33 637 (94.9) 129.0 (33.0) 21 073 (94.2)\nDiastolic blood pressure (mm Hg) 70.0 (19.0) 33 568 (94.7) 73.0 (20.0) 21 026 (94.0)\nTemperature (°C) 37.3 (1.5) 33 467 (94.4) 37.1 (1.5) 21 139 (94.5)\nHeart rate (bpm) 90.0 (27.0) 33 405 (94.2) 90.0 (28.0) 20 991 (93.9)\nGlasgow coma scale score 15.0 (0.0) 30 819 (86.9) 15.0 (0.0) 20 015 (89.5)\nHaemoglobin (g/L) 129.0 (30.0) 29 924 (84.4) 127.0 (31.0) 18 480 (82.6)\nWhite blood cell count (109/L) 7.4 (5.1) 29 740 (83.9) 7.6 (5.3) 18 362 (82.1)\nNeutrophil count (109/L) 5.6 (4.6) 29 594 (83.5) 5.8 (4.9) 18 354 (82.1)\nLymphocyte count (109/L) 0.9 (0.7) 29 553 (83.3) 0.9 (0.7) 18 348 (82.1)\nPlatelet count (109/L) 216.0 (120.0) 29 582 (83.4) 223.0 (126.0) 18 281 (81.8)\nSodium (mmol/L) 137.0 (6.0) 29 522 (83.2) 137.0 (6.0) 18 409 (82.3)\nPotassium (mmol/L) 4.1 (0.8) 27 224 (76.8) 4.1 (0.8) 16 926 (75.7)\nTotal bilirubin (mg/dL) 10.0 (7.0) 24 446 (68.9) 10.0 (7.0) 15 404 (68.9)\nUrea (mmol/L) 7.0 (6.3) 26 122 (73.7) 7.3 (6.8) 16 863 (75.4)\nCreatinine (pmol/L) 86.0 (53.0) 29 439 (83.0) 86.0 (56.0) 18 225 (81.5)\nC reactive protein (mg/L) 84.9 (122.0) 27 856 (78.5) 78.0 (120.0) 17 119 (76.6)"}