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PMC:7116472 / 25509-28333 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
367 821-839 Gene denotes C reactive protein Gene:1401
368 84-91 Species denotes patient Tax:9606
369 680-688 Species denotes patients Tax:9606
370 562-566 Chemical denotes urea MESH:D014508
371 37-46 Disease denotes Mortality MESH:D003643
372 135-147 Disease denotes inflammation MESH:D007249
373 233-239 Disease denotes sepsis MESH:D018805
374 263-272 Disease denotes pneumonia MESH:D011014
375 494-500 Disease denotes sepsis MESH:D018805
376 524-533 Disease denotes pneumonia MESH:D011014
377 653-662 Disease denotes mortality MESH:D003643
378 703-711 Disease denotes covid-19 MESH:C000657245
379 755-763 Disease denotes covid-19 MESH:C000657245
383 1325-1331 Chemical denotes oxygen MESH:D010100
384 884-892 Disease denotes covid-19 MESH:C000657245
385 984-994 Disease denotes COVID-GRAM MESH:C000657245
387 1905-1913 Disease denotes covid-19 MESH:C000657245
391 2520-2528 Species denotes patients Tax:9606
392 2317-2325 Disease denotes covid-19 MESH:C000657245
393 2534-2542 Disease denotes covid-19 MESH:C000657245

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T167 0-29 Sentence denotes Comparison with other studies
T168 30-311 Sentence denotes The 4C Mortality Score contains parameters reflecting patient demographics, comorbidity, physiology, and inflammation at hospital admission; it shares characteristics with existing prognostic scores for sepsis and community acquired pneumonia but has important differences as well.
T169 312-393 Sentence denotes No preexisting score appears to use this combination of variables and weightings.
T170 394-844 Sentence denotes Altered consciousness and high respiratory rate are included in most risk stratification scores for sepsis and community acquired pneumonia,21222829323336 while raised urea is also a common component.212228 Increasing age is a strong predictor of in-hospital mortality in our cohort of patients admitted with covid-19 and is commonly included in other existing covid-19 scores,374142 together with comorbidity374142 and raised C reactive protein.4043
T171 845-1344 Sentence denotes Discriminatory performance of existing covid-19 scores applied to our cohort was lower than reported in derivation cohorts (DL score 0.74, COVID-GRAM 0.88, Xie score 0.98).373840 The use of small inpatient cohorts from Wuhan, China for model development might have resulted in overfitting, limiting generalisability in other cohorts.3840 The Xie score demonstrated the highest discriminatory power (0.73), and included age, lymphocyte count, lactate dehydrogenase, and peripheral oxygen saturations.
T172 1345-1523 Sentence denotes However, we were only able to apply this score for less than 10% of the validation cohort because lactate dehydrogenase is not routinely measured on hospital admission in the UK.
T173 1524-2063 Sentence denotes Owing to challenges of clinical data collection during an epidemic, missing data are common, with choice of predictors influenced by data availability.40 Complete case analysis often leads to exclusion of a substantial proportion of the original sample, subsequently leading to a loss of precision and power.44 However, the assessment of missing data on model performance in novel covid-19 risk stratification scores has been limited37 or unexplored,3840 potentially introducing bias and further limiting generalisability to other cohorts.
T174 2064-2260 Sentence denotes We found discriminatory performance in both derivation and validation cohorts remained similar after the imputation of a wide range of variables,41 further supporting the validity of our findings.
T175 2261-2824 Sentence denotes The presence of comorbidities is handled differently in covid-19 prognostic scores; comorbidities might be included individually,4042 given equal weight,37 or found to have no predictive effect.38 Recent evidence suggests an additive effect of comorbidity in patients with covid-19, with increasing number of comorbidities associated with poorer outcomes.16 In our cohort, the inclusion of individual comorbidities within the machine learning model conferred minimal additional discriminatory performance, supporting the inclusion of an overall comorbidity count.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T16 233-239 Phenotype denotes sepsis http://purl.obolibrary.org/obo/HP_0100806
T17 263-272 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T18 494-500 Phenotype denotes sepsis http://purl.obolibrary.org/obo/HP_0100806
T19 524-533 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090