PMC:7115396 / 14509-15530
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T65 | 7-13 | Body_part | denotes | Tissue | http://purl.org/sig/ont/fma/fma9637 |
| T66 | 279-282 | Body_part | denotes | eye | http://purl.org/sig/ont/fma/fma54448 |
| T67 | 409-417 | Body_part | denotes | tracheas | http://purl.org/sig/ont/fma/fma7394 |
| T68 | 419-424 | Body_part | denotes | lungs | http://purl.org/sig/ont/fma/fma68877 |
| T69 | 426-433 | Body_part | denotes | kidneys | http://purl.org/sig/ont/fma/fma7203 |
| T70 | 439-444 | Body_part | denotes | bursa | http://purl.org/sig/ont/fma/fma9692 |
| T71 | 629-632 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T72 | 808-811 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T18 | 7-13 | Body_part | denotes | Tissue | http://purl.obolibrary.org/obo/UBERON_0000479 |
| T19 | 279-282 | Body_part | denotes | eye | http://purl.obolibrary.org/obo/UBERON_0000970 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T27 | 31-46 | Disease | denotes | viral infection | http://purl.obolibrary.org/obo/MONDO_0005108 |
| T28 | 37-46 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T194 | 55-56 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T195 | 84-92 | http://purl.obolibrary.org/obo/NCBITaxon_9031 | denotes | chickens |
| T196 | 247-249 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
| T197 | 279-282 | http://www.ebi.ac.uk/efo/EFO_0000827 | denotes | eye |
| T198 | 419-424 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lungs |
| T199 | 426-433 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | kidneys |
| T200 | 426-433 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | kidneys |
| T201 | 426-433 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | kidneys |
| T202 | 498-502 | http://purl.obolibrary.org/obo/CLO_0001757 | denotes | at 1 |
| T203 | 504-508 | http://purl.obolibrary.org/obo/CLO_0001000 | denotes | 3, 5 |
| T204 | 718-719 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T205 | 968-973 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T37 | 80-83 | Chemical | denotes | SPF | http://purl.obolibrary.org/obo/CHEBI_88542 |
| T38 | 134-139 | Chemical | denotes | group | http://purl.obolibrary.org/obo/CHEBI_24433 |
| T39 | 370-375 | Chemical | denotes | group | http://purl.obolibrary.org/obo/CHEBI_24433 |
| T40 | 477-482 | Chemical | denotes | group | http://purl.obolibrary.org/obo/CHEBI_24433 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16 | 14-21 | http://purl.obolibrary.org/obo/GO_0009606 | denotes | tropism |
| T17 | 31-46 | http://purl.obolibrary.org/obo/GO_0016032 | denotes | viral infection |
| T18 | 690-711 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | reverse transcription |
| T19 | 698-711 | http://purl.obolibrary.org/obo/GO_0006351 | denotes | transcription |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T98 | 0-54 | Sentence | denotes | 2.7.2 Tissue tropism of early viral infection in vivo |
| T99 | 55-141 | Sentence | denotes | A total of 100 1-day-old SPF chickens were assigned to four groups (n = 25 per group). |
| T100 | 142-404 | Sentence | denotes | The birds were inoculated with 200 μL allantoic fluid containing 105 EID50 of the rH120, rIBYZ, or rH120-S1/YZ strains, respectively via eye drop and the intranasal route and 200 μL PBS per chick was administered to the control group (n = 25) via the same route. |
| T101 | 405-590 | Sentence | denotes | The tracheas, lungs, kidneys, and bursa from the 5 inoculated birds per group were harvested at 1, 3, 5, and 7 dpi, weighed, and collected into 1 mL PBS per sample and frozen at −80 °C. |
| T102 | 591-797 | Sentence | denotes | After grinding the samples, the viral RNA was extracted using TRIzol, and the cDNA was obtained by reverse transcription using a PrimeScript RT Master Mix Perfect Real Time Kit (TaKaRa, Otsu, Shiga, Japan). |
| T103 | 798-904 | Sentence | denotes | The viral RNA copies from each of the different samples were detected by real-time PCR as described above. |
| T104 | 905-1021 | Sentence | denotes | All assays were run in triplicate and the copy number for each virus was calculated according to the standard curve. |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T11 | 279-287 | Phenotype | denotes | eye drop | http://purl.obolibrary.org/obo/HP_0000508 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 191 | 31-46 | Disease | denotes | viral infection | MESH:D001102 |
| 197 | 84-92 | Species | denotes | chickens | Tax:9031 |
| 198 | 332-337 | Species | denotes | chick | Tax:9031 |
| 199 | 324-327 | Chemical | denotes | PBS | MESH:D007854 |
| 200 | 554-557 | Chemical | denotes | PBS | MESH:D007854 |
| 201 | 653-659 | Chemical | denotes | TRIzol | MESH:C411644 |