PMC:7113610 / 21418-24588
Annnotations
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
761 | 31-48 | Species | denotes | novel coronavirus | Tax:2697049 |
762 | 126-138 | Species | denotes | raccoon dogs | Tax:34880 |
763 | 244-254 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
764 | 423-431 | Species | denotes | SARS-CoV | Tax:694009 |
765 | 478-486 | Species | denotes | Beta CoV | Tax:694002 |
766 | 598-606 | Species | denotes | SARS-CoV | Tax:694009 |
767 | 634-638 | Species | denotes | CoVs | Tax:11118 |
768 | 737-742 | Species | denotes | human | Tax:9606 |
769 | 743-756 | Species | denotes | coronaviruses | Tax:11118 |
770 | 856-875 | Species | denotes | novel coronaviruses | Tax:2697049 |
771 | 960-973 | Species | denotes | coronaviruses | Tax:11118 |
772 | 1044-1052 | Species | denotes | patients | Tax:9606 |
773 | 1054-1058 | Species | denotes | mice | Tax:10090 |
774 | 1197-1205 | Species | denotes | patients | Tax:9606 |
775 | 1090-1100 | Chemical | denotes | Remdesivir | MESH:C000606551 |
776 | 1102-1111 | Chemical | denotes | Lopinavir | MESH:D061466 |
777 | 1113-1122 | Chemical | denotes | Ritonavir | MESH:D019438 |
778 | 1128-1139 | Chemical | denotes | Oseltamivir | MESH:D053139 |
779 | 225-233 | Disease | denotes | zoonotic | MESH:D015047 |
780 | 554-563 | Disease | denotes | infection | MESH:D007239 |
781 | 1035-1043 | Disease | denotes | COVID-19 | MESH:C000657245 |
782 | 1166-1174 | Disease | denotes | COVID-19 | MESH:C000657245 |
783 | 1175-1184 | Disease | denotes | infection | MESH:D007239 |
784 | 1188-1196 | Disease | denotes | infected | MESH:D007239 |
785 | 1396-1404 | Disease | denotes | infected | MESH:D007239 |
801 | 1548-1553 | Species | denotes | human | Tax:9606 |
802 | 1554-1567 | Species | denotes | coronaviruses | Tax:11118 |
803 | 1760-1770 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
804 | 2019-2024 | Species | denotes | human | Tax:9606 |
805 | 2280-2290 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
806 | 2304-2311 | Species | denotes | patient | Tax:9606 |
807 | 2356-2366 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
808 | 2694-2704 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
809 | 2718-2726 | Species | denotes | patients | Tax:9606 |
810 | 1887-1894 | Disease | denotes | Johnson | MESH:C535882 |
811 | 1897-1904 | Disease | denotes | Johnson | MESH:C535882 |
812 | 2375-2383 | Disease | denotes | COVID-19 | MESH:C000657245 |
813 | 2419-2437 | Disease | denotes | seasonal allergies | MESH:D004342 |
814 | 2493-2509 | Disease | denotes | seasonal allergy | MESH:D004342 |
815 | 2946-2954 | Disease | denotes | COVID-19 | MESH:C000657245 |
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T87 | 140-144 | Body_part | denotes | palm | http://purl.org/sig/ont/fma/fma24920 |
T88 | 343-346 | Body_part | denotes | DNA | http://purl.org/sig/ont/fma/fma74412 |
T89 | 395-407 | Body_part | denotes | glycoprotein | http://purl.org/sig/ont/fma/fma62925 |
T90 | 1274-1281 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T91 | 1372-1376 | Body_part | denotes | back | http://purl.org/sig/ont/fma/fma25056 |
LitCovid_AGAC
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
p68811s16 | 1296-1304 | PosReg | denotes | enhanced |
p68811s18 | 1309-1329 | MPA | denotes | transmission ability |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T228 | 244-252 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T229 | 244-248 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T230 | 423-431 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T231 | 423-427 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T232 | 554-563 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
T233 | 598-606 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T234 | 598-602 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T235 | 620-624 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T236 | 935-944 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
T237 | 946-950 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T238 | 1035-1043 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T239 | 1166-1174 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T240 | 1175-1184 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
T241 | 1760-1768 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T242 | 1760-1764 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T243 | 2280-2288 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T244 | 2280-2284 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T245 | 2356-2364 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T246 | 2356-2360 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T247 | 2375-2383 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T248 | 2405-2414 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
T249 | 2480-2489 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
T250 | 2502-2509 | Disease | denotes | allergy | http://purl.obolibrary.org/obo/MONDO_0005271 |
T251 | 2694-2702 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T252 | 2694-2698 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T253 | 2946-2954 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T197 | 112-116 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bats |
T198 | 126-133 | http://purl.obolibrary.org/obo/NCBITaxon_9654 | denotes | raccoon |
T199 | 163-170 | http://purl.obolibrary.org/obo/NCBITaxon_33208 | denotes | animals |
T200 | 316-320 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bats |
T201 | 630-633 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
T202 | 737-742 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
T203 | 1337-1342 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T204 | 1503-1508 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T205 | 1548-1553 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
T206 | 2002-2003 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T207 | 2019-2024 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
T208 | 2029-2035 | http://purl.obolibrary.org/obo/NCBITaxon_33208 | denotes | animal |
T209 | 2130-2131 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T210 | 2163-2170 | http://purl.obolibrary.org/obo/NCBITaxon_33208 | denotes | animals |
T211 | 2184-2185 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T212 | 2249-2250 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T213 | 2388-2389 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T214 | 2757-2767 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing is |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T77 | 343-346 | Chemical | denotes | DNA | http://purl.obolibrary.org/obo/CHEBI_16991 |
T78 | 395-407 | Chemical | denotes | glycoprotein | http://purl.obolibrary.org/obo/CHEBI_17089 |
T79 | 900-910 | Chemical | denotes | antivirals | http://purl.obolibrary.org/obo/CHEBI_22587 |
T80 | 1102-1111 | Chemical | denotes | Lopinavir | http://purl.obolibrary.org/obo/CHEBI_31781 |
T81 | 1128-1139 | Chemical | denotes | Oseltamivir | http://purl.obolibrary.org/obo/CHEBI_7798 |
T82 | 1274-1281 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T83 | 1591-1606 | Chemical | denotes | antiviral drugs | http://purl.obolibrary.org/obo/CHEBI_36044 |
T84 | 1591-1600 | Chemical | denotes | antiviral | http://purl.obolibrary.org/obo/CHEBI_22587 |
T85 | 1601-1606 | Chemical | denotes | drugs | http://purl.obolibrary.org/obo/CHEBI_23888 |
T86 | 2243-2247 | Chemical | denotes | drug | http://purl.obolibrary.org/obo/CHEBI_23888 |
LitCovid-PD-GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T20 | 343-360 | http://purl.obolibrary.org/obo/GO_0006310 | denotes | DNA recombination |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T157 | 0-26 | Sentence | denotes | Conclusion and perspective |
T158 | 27-220 | Sentence | denotes | The novel coronavirus originated from the Hunan seafood market at Wuhan, China where bats, snakes, raccoon dogs, palm civets, and other animals are sold, and rapidly spread up to 109 countries. |
T159 | 221-342 | Sentence | denotes | The zoonotic source of SARS-CoV-2 is not confirmed, however, sequence-based analysis suggested bats as the key reservoir. |
T160 | 343-564 | Sentence | denotes | DNA recombination was found to be involved at spike glycoprotein which assorted SARS-CoV (CoVZXC21 or CoVZC45) with the RBD of another Beta CoV, thus could be the reason for cross-species transmission and rapid infection. |
T161 | 565-639 | Sentence | denotes | According to phylogenetic trees, SARS-CoV is closer to SARS-like bat CoVs. |
T162 | 640-757 | Sentence | denotes | Until now, no promising clinical treatments or prevention strategies have been developed against human coronaviruses. |
T163 | 758-876 | Sentence | denotes | However, the researchers are working to develop efficient therapeutic strategies to cope with the novel coronaviruses. |
T164 | 877-1089 | Sentence | denotes | Various broad-spectrum antivirals previously used against influenza, SARS and MERS coronaviruses have been evaluated either alone or in combinations to treat COVID-19 patients, mice models, and clinical isolates. |
T165 | 1090-1206 | Sentence | denotes | Remdesivir, Lopinavir, Ritonavir, and Oseltamivir significantly blocked the COVID-19 infection in infected patients. |
T166 | 1207-1343 | Sentence | denotes | It can be cocluded that the homologus recombination event at the S protein of RBD region enhanced the transmission ability of the virus. |
T167 | 1344-1529 | Sentence | denotes | While the decision of bring back the nationals from infected area by various countries and poor screening of passengers, become the leading cause of spreading virus in others countries. |
T168 | 1530-1693 | Sentence | denotes | Most importantly, human coronaviruses targeting vaccines and antiviral drugs should be designed that could be used against the current as well as future epidemics. |
T169 | 1694-1988 | Sentence | denotes | There are many companies working for the development of effective SARS-CoV-2 vaccines, such as Moderna Therapeutics, Inovio Pharmaceuticals, Novavax, Vir Biotechnology, Stermirna Therapeutics, Johnson & Johnson, VIDO-InterVac, GeoVax-BravoVax, Clover Biopharmaceuticals, CureVac, and Codagenix. |
T170 | 1989-2115 | Sentence | denotes | But there is a need for rapid human and animal-based trails as these vaccines still require 3–10 months for commercialization. |
T171 | 2116-2201 | Sentence | denotes | There must be a complete ban on utilizing wild animals and birds as a source of food. |
T172 | 2202-2329 | Sentence | denotes | Beside the development of most efficient drug, a strategy to rapidly diagnose SARS-CoV-2 in suspected patient is also required. |
T173 | 2330-2457 | Sentence | denotes | The signs and symptoms of SARS-CoV-2 induced COVID-19 are a bit similar to influenza and seasonal allergies (pollen allergies). |
T174 | 2458-2619 | Sentence | denotes | Person suffering from influenza or seasonal allergy may also exhibit temprature which can be detected by thermo-scanners, hence the person will become suspected. |
T175 | 2620-2797 | Sentence | denotes | Therefore, an accurate and rapid diagnostic kit or meter for detection of SARS-CoV-2 in suspected patients is required, as the PCR based testing is expensive and time consuming. |
T176 | 2798-3082 | Sentence | denotes | Different teams of Chinese doctors should immediately sent to Eurpean and other countries, especially spain and Italy to control the over spread of COVID-19, because Chinese doctors have efficiently controlled the outbreak in china and limited the mortality rate to less than 3% only. |
T177 | 3083-3170 | Sentence | denotes | The therapeutic strategies used by Chinese, should also be followed by other countries. |
LitCovid-PD-HP
Id | Subject | Object | Predicate | Lexical cue | hp_id |
---|---|---|---|---|---|
T27 | 2419-2437 | Phenotype | denotes | seasonal allergies | http://purl.obolibrary.org/obo/HP_0012395 |
T28 | 2493-2509 | Phenotype | denotes | seasonal allergy | http://purl.obolibrary.org/obo/HP_0012395 |
LitCovid-PMC-OGER-BB
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T603 | 37-48 | NCBITaxon:11118 | denotes | coronavirus |
T604 | 112-116 | SP_2;NCBITaxon:9397 | denotes | bats |
T605 | 118-124 | NCBITaxon:8570 | denotes | snakes |
T606 | 126-133 | NCBITaxon:9654 | denotes | raccoon |
T607 | 134-138 | NCBITaxon:9615 | denotes | dogs |
T608 | 140-151 | SP_5 | denotes | palm civets |
T609 | 163-170 | NCBITaxon:33208 | denotes | animals |
T610 | 244-254 | SP_7 | denotes | SARS-CoV-2 |
T611 | 316-320 | SP_2;NCBITaxon:9397 | denotes | bats |
T612 | 389-394 | PG_18;PG_1 | denotes | spike |
T613 | 395-407 | PG_18;PG_1;CHEBI:17089;BV_11;CHEBI:17089 | denotes | glycoprotein |
T614 | 423-431 | SP_10 | denotes | SARS-CoV |
T615 | 523-530 | NCBITaxon:species | denotes | species |
T616 | 598-606 | SP_10 | denotes | SARS-CoV |
T617 | 620-624 | SP_10 | denotes | SARS |
T618 | 630-633 | SP_2 | denotes | bat |
T619 | 737-742 | SP_6;NCBITaxon:9606 | denotes | human |
T620 | 743-756 | NCBITaxon:11118 | denotes | coronaviruses |
T621 | 862-875 | NCBITaxon:11118 | denotes | coronaviruses |
T622 | 946-950 | SP_10 | denotes | SARS |
T623 | 955-959 | SP_9 | denotes | MERS |
T624 | 960-973 | NCBITaxon:11118 | denotes | coronaviruses |
T625 | 1035-1043 | SP_7 | denotes | COVID-19 |
T626 | 1054-1058 | NCBITaxon:10088 | denotes | mice |
T627 | 1090-1100 | DG_28 | denotes | Remdesivir |
T628 | 1102-1111 | DG_23 | denotes | Lopinavir |
T629 | 1113-1122 | DG_30 | denotes | Ritonavir |
T630 | 1166-1174 | SP_7 | denotes | COVID-19 |
T631 | 1272-1281 | PG_1 | denotes | S protein |
T632 | 1337-1342 | NCBITaxon:10239 | denotes | virus |
T633 | 1503-1508 | NCBITaxon:10239 | denotes | virus |
T634 | 1548-1553 | SP_6;NCBITaxon:9606 | denotes | human |
T635 | 1554-1567 | NCBITaxon:11118 | denotes | coronaviruses |
T636 | 1601-1606 | CHEBI:36044;CHEBI:36044 | denotes | drugs |
T637 | 1760-1770 | SP_7 | denotes | SARS-CoV-2 |
T638 | 1818-1833 | CHEBI:52217;CHEBI:52217 | denotes | Pharmaceuticals |
T639 | 1945-1963 | CHEBI:33694;CHEBI:33694 | denotes | Biopharmaceuticals |
T640 | 2019-2024 | SP_6;NCBITaxon:9606 | denotes | human |
T641 | 2029-2035 | NCBITaxon:33208 | denotes | animal |
T642 | 2163-2170 | NCBITaxon:33208 | denotes | animals |
T643 | 2175-2180 | NCBITaxon:8782 | denotes | birds |
T644 | 2196-2200 | CHEBI:33290;CHEBI:33290 | denotes | food |
T645 | 2243-2247 | CHEBI:23888;CHEBI:23888 | denotes | drug |
T646 | 2280-2290 | SP_7 | denotes | SARS-CoV-2 |
T647 | 2356-2366 | SP_7 | denotes | SARS-CoV-2 |
T648 | 2375-2383 | SP_7 | denotes | COVID-19 |
T649 | 2458-2464 | NCBITaxon:9606 | denotes | Person |
T650 | 2590-2596 | NCBITaxon:9606 | denotes | person |
T651 | 2694-2704 | SP_7 | denotes | SARS-CoV-2 |
T652 | 2919-2926 | GO:0065007 | denotes | control |
T653 | 2946-2954 | SP_7 | denotes | COVID-19 |
T654 | 2997-3007 | GO:0065007 | denotes | controlled |
T178 | 960-973 | NCBITaxon:11118 | denotes | coronaviruses |
T44398 | 1548-1553 | SP_6;NCBITaxon:9606 | denotes | human |
T77563 | 1554-1567 | NCBITaxon:11118 | denotes | coronaviruses |
T29118 | 37-48 | NCBITaxon:11118 | denotes | coronavirus |
T44677 | 112-116 | SP_2;NCBITaxon:9397 | denotes | bats |
T86599 | 118-124 | NCBITaxon:8570 | denotes | snakes |
T83991 | 126-133 | NCBITaxon:9654 | denotes | raccoon |
T59099 | 134-138 | NCBITaxon:9615 | denotes | dogs |
T21619 | 140-151 | SP_5 | denotes | palm civets |
T60847 | 163-170 | NCBITaxon:33208 | denotes | animals |
T54579 | 244-254 | SP_7 | denotes | SARS-CoV-2 |
T14735 | 316-320 | SP_2;NCBITaxon:9397 | denotes | bats |
T62087 | 389-394 | PG_18;PG_1 | denotes | spike |
T8377 | 395-407 | PG_18;PG_1;CHEBI:17089;BV_11;CHEBI:17089 | denotes | glycoprotein |
T46318 | 423-431 | SP_10 | denotes | SARS-CoV |
T92076 | 523-530 | NCBITaxon:species | denotes | species |
T43925 | 598-606 | SP_10 | denotes | SARS-CoV |
T42708 | 620-624 | SP_10 | denotes | SARS |
T29611 | 630-633 | SP_2 | denotes | bat |
T83153 | 737-742 | SP_6;NCBITaxon:9606 | denotes | human |
T37205 | 743-756 | NCBITaxon:11118 | denotes | coronaviruses |
T17840 | 862-875 | NCBITaxon:11118 | denotes | coronaviruses |
T40268 | 946-950 | SP_10 | denotes | SARS |
T44107 | 955-959 | SP_9 | denotes | MERS |
T32313 | 960-973 | NCBITaxon:11118 | denotes | coronaviruses |
T88236 | 1035-1043 | SP_7 | denotes | COVID-19 |
T86052 | 1054-1058 | NCBITaxon:10088 | denotes | mice |
T93029 | 1090-1100 | DG_28 | denotes | Remdesivir |
T87590 | 1102-1111 | DG_23 | denotes | Lopinavir |
T96267 | 1113-1122 | DG_30 | denotes | Ritonavir |
T4310 | 1166-1174 | SP_7 | denotes | COVID-19 |
T33947 | 1272-1281 | PG_1 | denotes | S protein |
T90913 | 1337-1342 | NCBITaxon:10239 | denotes | virus |
T1507 | 1503-1508 | NCBITaxon:10239 | denotes | virus |
T74315 | 1548-1553 | SP_6;NCBITaxon:9606 | denotes | human |
T83666 | 1554-1567 | NCBITaxon:11118 | denotes | coronaviruses |
T59981 | 1601-1606 | CHEBI:36044;CHEBI:36044 | denotes | drugs |
T76622 | 1760-1770 | SP_7 | denotes | SARS-CoV-2 |
T67024 | 1818-1833 | CHEBI:52217;CHEBI:52217 | denotes | Pharmaceuticals |
T82110 | 1945-1963 | CHEBI:33694;CHEBI:33694 | denotes | Biopharmaceuticals |
T77711 | 2019-2024 | SP_6;NCBITaxon:9606 | denotes | human |
T58360 | 2029-2035 | NCBITaxon:33208 | denotes | animal |
T21446 | 2163-2170 | NCBITaxon:33208 | denotes | animals |
T60816 | 2175-2180 | NCBITaxon:8782 | denotes | birds |
T78185 | 2196-2200 | CHEBI:33290;CHEBI:33290 | denotes | food |
T68714 | 2243-2247 | CHEBI:23888;CHEBI:23888 | denotes | drug |
T47854 | 2280-2290 | SP_7 | denotes | SARS-CoV-2 |
T63179 | 2356-2366 | SP_7 | denotes | SARS-CoV-2 |
T76828 | 2375-2383 | SP_7 | denotes | COVID-19 |
T51480 | 2458-2464 | NCBITaxon:9606 | denotes | Person |
T1795 | 2590-2596 | NCBITaxon:9606 | denotes | person |
T9343 | 2694-2704 | SP_7 | denotes | SARS-CoV-2 |
T17534 | 2919-2926 | GO:0065007 | denotes | control |
T81054 | 2946-2954 | SP_7 | denotes | COVID-19 |
T59687 | 2997-3007 | GO:0065007 | denotes | controlled |