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PMC:7111504 / 628-1503 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
24 686-689 Gene denotes TCR Gene:6962
25 134-156 Species denotes 2019 novel coronavirus Tax:2697049
26 158-167 Species denotes 2019-nCoV Tax:2697049
27 209-213 Species denotes nCoV Tax:2697049
28 236-289 Species denotes Severe acute respiratory syndrome-related coronavirus Tax:694009
29 291-299 Species denotes SARS CoV Tax:694009
30 396-400 Species denotes nCoV Tax:2697049
31 561-570 Species denotes 2019-nCoV Tax:2697049

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T13 71-82 CHEBI:60816;CHEBI:60816 denotes immunogenic
T14 145-156 NCBITaxon:11118 denotes coronavirus
T15 158-167 SP_7 denotes 2019-nCoV
T16 249-260 UBERON:0001004 denotes respiratory
T17 278-289 NCBITaxon:11118 denotes coronavirus
T18 291-299 SP_10 denotes SARS CoV
T19 341-352 CHEBI:60816;CHEBI:60816 denotes immunogenic
T20 356-362 CL:0000084;BV_23 denotes T cell
T21 363-369 BV_23 denotes assays
T22 450-461 CHEBI:60816;CHEBI:60816 denotes immunogenic
T23 495-502 BV_9 denotes Epitope
T24 561-570 SP_7 denotes 2019-nCoV
T25 613-620 SO:0001023 denotes alleles
T26 669-675 CL:0000084 denotes T Cell
T27 768-782 BV_15 denotes immunogenicity
T28 849-863 BV_15 denotes immunogenicity
T88509 71-82 CHEBI:60816;CHEBI:60816 denotes immunogenic
T79155 145-156 NCBITaxon:11118 denotes coronavirus
T74980 158-167 SP_7 denotes 2019-nCoV
T79472 249-260 UBERON:0001004 denotes respiratory
T72088 278-289 NCBITaxon:11118 denotes coronavirus
T78785 291-299 SP_10 denotes SARS CoV
T6187 341-352 CHEBI:60816;CHEBI:60816 denotes immunogenic
T6838 356-362 CL:0000084;BV_23 denotes T cell
T61854 363-369 BV_23 denotes assays
T23618 450-461 CHEBI:60816;CHEBI:60816 denotes immunogenic
T65792 495-502 BV_9 denotes Epitope
T43750 561-570 SP_7 denotes 2019-nCoV
T71761 613-620 SO:0001023 denotes alleles
T45031 669-675 CL:0000084 denotes T Cell
T11574 768-782 BV_15 denotes immunogenicity
T5154 849-863 BV_15 denotes immunogenicity

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T2 358-362 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T3 609-612 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T4 671-675 Body_part denotes Cell http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 236-269 Disease denotes Severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T2 291-295 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T10 47-48 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 83-91 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T12 214-222 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T13 356-362 http://purl.obolibrary.org/obo/CL_0000084 denotes T cell
T14 393-395 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T15 401-409 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T16 417-418 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T17 462-470 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T18 541-542 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 577-585 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T20 669-675 http://purl.obolibrary.org/obo/CL_0000084 denotes T Cell
T21 747-748 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T22 828-836 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T23 842-843 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T3 83-91 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T4 214-222 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T5 401-409 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T6 462-470 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T7 577-585 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T8 828-836 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T11 0-8 Sentence denotes Results:
T12 9-189 Sentence denotes We report in silico identification of a comprehensive list of immunogenic peptides that can be used as potential targets for 2019 novel coronavirus (2019-nCoV) vaccine development.
T13 190-370 Sentence denotes First, we found 28 nCoV peptides identical to Severe acute respiratory syndrome-related coronavirus (SARS CoV) that have previously been characterized immunogenic by T cell assays.
T14 371-519 Sentence denotes Second, we identified 48 nCoV peptides having a high degree of similarity with immunogenic peptides deposited in The Immune Epitope Database (IEDB).
T15 520-874 Sentence denotes Lastly, we conducted a de novo search of 2019-nCoV 9-mer peptides that i) bind to common HLA alleles in Chinese and European population and ii) have T Cell Receptor (TCR) recognition potential by positional weight matrices and a recently developed immunogenicity algorithm, iPred, and identified in total 63 peptides with a high immunogenicity potential.