PMC:7111504 / 4176-5931 JSONTXT

{"project":"LitCovid-PubTator","denotations":[{"id":"84","span":{"begin":195,"end":200},"obj":"Gene"},{"id":"85","span":{"begin":1031,"end":1036},"obj":"Gene"},{"id":"86","span":{"begin":1077,"end":1082},"obj":"Gene"},{"id":"87","span":{"begin":1241,"end":1246},"obj":"Gene"},{"id":"88","span":{"begin":1303,"end":1311},"obj":"Gene"},{"id":"89","span":{"begin":1371,"end":1376},"obj":"Gene"},{"id":"90","span":{"begin":1417,"end":1422},"obj":"Gene"},{"id":"91","span":{"begin":1482,"end":1487},"obj":"Gene"},{"id":"92","span":{"begin":1542,"end":1549},"obj":"Gene"},{"id":"93","span":{"begin":1557,"end":1561},"obj":"Gene"},{"id":"94","span":{"begin":1616,"end":1624},"obj":"Gene"},{"id":"95","span":{"begin":1683,"end":1691},"obj":"Gene"},{"id":"96","span":{"begin":103,"end":112},"obj":"Species"},{"id":"97","span":{"begin":208,"end":249},"obj":"Disease"},{"id":"100","span":{"begin":13,"end":22},"obj":"Species"},{"id":"101","span":{"begin":70,"end":78},"obj":"Species"},{"id":"103","span":{"begin":1700,"end":1708},"obj":"Species"}],"attributes":[{"id":"A84","pred":"tao:has_database_id","subj":"84","obj":"Gene:3105"},{"id":"A85","pred":"tao:has_database_id","subj":"85","obj":"Gene:3106"},{"id":"A86","pred":"tao:has_database_id","subj":"86","obj":"Gene:3105"},{"id":"A87","pred":"tao:has_database_id","subj":"87","obj":"Gene:3105"},{"id":"A88","pred":"tao:has_database_id","subj":"88","obj":"Gene:3123"},{"id":"A89","pred":"tao:has_database_id","subj":"89","obj":"Gene:3105"},{"id":"A90","pred":"tao:has_database_id","subj":"90","obj":"Gene:3105"},{"id":"A91","pred":"tao:has_database_id","subj":"91","obj":"Gene:3105"},{"id":"A92","pred":"tao:has_database_id","subj":"92","obj":"Gene:3122"},{"id":"A93","pred":"tao:has_database_id","subj":"93","obj":"Gene:3123"},{"id":"A94","pred":"tao:has_database_id","subj":"94","obj":"Gene:3123"},{"id":"A95","pred":"tao:has_database_id","subj":"95","obj":"Gene:3123"},{"id":"A96","pred":"tao:has_database_id","subj":"96","obj":"Tax:2697049"},{"id":"A97","pred":"tao:has_database_id","subj":"97","obj":"MESH:C536108"},{"id":"A100","pred":"tao:has_database_id","subj":"100","obj":"Tax:2697049"},{"id":"A101","pred":"tao:has_database_id","subj":"101","obj":"Tax:694009"},{"id":"A103","pred":"tao:has_database_id","subj":"103","obj":"Tax:694009"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Table 1. 28 2019-nCoV peptides having exact matches with immunogenic SARS-CoV peptides.\nIEDB.peptide 2019-nCoV.pattern Antigen.Name Allele.Name\nTLACFVLAAV TLACFVLAAV Membrane glycoprotein HLA-A *02:01\nAFFGMSRIGMEVTPSGTW AFFGMSRIGMEVTPSGTW N protein\nALNTPKDHI ALNTPKDHI Nucleoprotein HLA-A *02:01\nAQFAPSASAFFGMSR AQFAPSASAFFGMSR nucleocapsid protein HLA class II\nAQFAPSASAFFGMSRIGM AQFAPSASAFFGMSRIGM N protein\nGMSRIGMEV GMSRIGMEV Nucleoprotein HLA-A *02:01\nILLNKHIDA ILLNKHIDA Nucleoprotein HLA-A *02:01\nIRQGTDYKHWPQIAQFA IRQGTDYKHWPQIAQFA N protein\nKHWPQIAQFAPSASAFF KHWPQIAQFAPSASAFF N protein\nLALLLLDRL LALLLLDRL Nucleoprotein HLA-A *02:01\nLLLDRLNQL LLLDRLNQL Nucleoprotein HLA-A *02:01\nLLNKHIDAYKTFPPTEPK LLNKHIDAYKTFPPTEPK N protein\nLQLPQGTTL LQLPQGTTL Nucleoprotein HLA-A *02:01\nRRPQGLPNNTASWFT RRPQGLPNNTASWFT nucleocapsid protein HLA class I\nYKTFPPTEPKKDKKKK YKTFPPTEPKKDKKKK N protein\nILLNKHID ILLNKHID Nucleoprotein HLA-A *02:01\nMEVTPSGTWL MEVTPSGTWL nucleocapsid protein HLA-B *40:01\nALNTLVKQL ALNTLVKQL S protein HLA-A *02:01\nFIAGLIAIV FIAGLIAIV Spike glycoprotein precursor HLA-A2\nLITGRLQSL LITGRLQSL Spike glycoprotein precursor HLA-A2\nNLNESLIDL NLNESLIDL S protein HLA-A *02:01\nQALNTLVKQLSSNFGAI QALNTLVKQLSSNFGAI S protein HLA-DRB1 *04:01\nRLNEVAKNL RLNEVAKNL Spike glycoprotein precursor HLA-A *02:01\nVLNDILSRL VLNDILSRL S protein HLA-A *02:01\nVVFLHVTYV VVFLHVTYV Spike glycoprotein precursor HLA-A *02:01\nGAALQIPFAMQMAYRF GAALQIPFAMQMAYRF S protein HLA-DRA *01:01/DRB1 *07:01\nMAYRFNGIGVTQNVLY MAYRFNGIGVTQNVLY S protein HLA-DRB1 *04:01\nQLIRAAEIRASANLAATK QLIRAAEIRASANLAATK S protein HLA-DRB1 *04:01\n*SARS-CoV: Severe acute respiratory syndrome coronavirus"}

{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T64","span":{"begin":13,"end":22},"obj":"SP_7"},{"id":"T65","span":{"begin":58,"end":69},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T66","span":{"begin":70,"end":78},"obj":"SP_10"},{"id":"T67","span":{"begin":1700,"end":1708},"obj":"SP_10"},{"id":"T68","span":{"begin":1710,"end":1722},"obj":"SP_10"},{"id":"T69","span":{"begin":1723,"end":1734},"obj":"SP_10;UBERON:0001004"},{"id":"T70","span":{"begin":1735,"end":1755},"obj":"SP_10"},{"id":"T24098","span":{"begin":13,"end":22},"obj":"SP_7"},{"id":"T68353","span":{"begin":58,"end":69},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T10691","span":{"begin":70,"end":78},"obj":"SP_10"},{"id":"T43844","span":{"begin":1700,"end":1708},"obj":"SP_10"},{"id":"T38738","span":{"begin":1710,"end":1722},"obj":"SP_10"},{"id":"T69357","span":{"begin":1723,"end":1734},"obj":"SP_10;UBERON:0001004"},{"id":"T49984","span":{"begin":1735,"end":1755},"obj":"SP_10"}],"text":"Table 1. 28 2019-nCoV peptides having exact matches with immunogenic SARS-CoV peptides.\nIEDB.peptide 2019-nCoV.pattern Antigen.Name Allele.Name\nTLACFVLAAV TLACFVLAAV Membrane glycoprotein HLA-A *02:01\nAFFGMSRIGMEVTPSGTW AFFGMSRIGMEVTPSGTW N protein\nALNTPKDHI ALNTPKDHI Nucleoprotein HLA-A *02:01\nAQFAPSASAFFGMSR AQFAPSASAFFGMSR nucleocapsid protein HLA class II\nAQFAPSASAFFGMSRIGM AQFAPSASAFFGMSRIGM N protein\nGMSRIGMEV GMSRIGMEV Nucleoprotein HLA-A *02:01\nILLNKHIDA ILLNKHIDA Nucleoprotein HLA-A *02:01\nIRQGTDYKHWPQIAQFA IRQGTDYKHWPQIAQFA N protein\nKHWPQIAQFAPSASAFF KHWPQIAQFAPSASAFF N protein\nLALLLLDRL LALLLLDRL Nucleoprotein HLA-A *02:01\nLLLDRLNQL LLLDRLNQL Nucleoprotein HLA-A *02:01\nLLNKHIDAYKTFPPTEPK LLNKHIDAYKTFPPTEPK N protein\nLQLPQGTTL LQLPQGTTL Nucleoprotein HLA-A *02:01\nRRPQGLPNNTASWFT RRPQGLPNNTASWFT nucleocapsid protein HLA class I\nYKTFPPTEPKKDKKKK YKTFPPTEPKKDKKKK N protein\nILLNKHID ILLNKHID Nucleoprotein HLA-A *02:01\nMEVTPSGTWL MEVTPSGTWL nucleocapsid protein HLA-B *40:01\nALNTLVKQL ALNTLVKQL S protein HLA-A *02:01\nFIAGLIAIV FIAGLIAIV Spike glycoprotein precursor HLA-A2\nLITGRLQSL LITGRLQSL Spike glycoprotein precursor HLA-A2\nNLNESLIDL NLNESLIDL S protein HLA-A *02:01\nQALNTLVKQLSSNFGAI QALNTLVKQLSSNFGAI S protein HLA-DRB1 *04:01\nRLNEVAKNL RLNEVAKNL Spike glycoprotein precursor HLA-A *02:01\nVLNDILSRL VLNDILSRL S protein HLA-A *02:01\nVVFLHVTYV VVFLHVTYV Spike glycoprotein precursor HLA-A *02:01\nGAALQIPFAMQMAYRF GAALQIPFAMQMAYRF S protein HLA-DRA *01:01/DRB1 *07:01\nMAYRFNGIGVTQNVLY MAYRFNGIGVTQNVLY S protein HLA-DRB1 *04:01\nQLIRAAEIRASANLAATK QLIRAAEIRASANLAATK S protein HLA-DRB1 *04:01\n*SARS-CoV: Severe acute respiratory syndrome coronavirus"}

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T10","span":{"begin":181,"end":193},"obj":"Body_part"},{"id":"T11","span":{"begin":195,"end":198},"obj":"Body_part"},{"id":"T12","span":{"begin":250,"end":257},"obj":"Body_part"},{"id":"T13","span":{"begin":295,"end":298},"obj":"Body_part"},{"id":"T14","span":{"begin":355,"end":362},"obj":"Body_part"},{"id":"T15","span":{"begin":364,"end":367},"obj":"Body_part"},{"id":"T16","span":{"begin":419,"end":426},"obj":"Body_part"},{"id":"T17","span":{"begin":464,"end":467},"obj":"Body_part"},{"id":"T18","span":{"begin":514,"end":517},"obj":"Body_part"},{"id":"T19","span":{"begin":567,"end":574},"obj":"Body_part"},{"id":"T20","span":{"begin":615,"end":622},"obj":"Body_part"},{"id":"T21","span":{"begin":660,"end":663},"obj":"Body_part"},{"id":"T22","span":{"begin":710,"end":713},"obj":"Body_part"},{"id":"T23","span":{"begin":765,"end":772},"obj":"Body_part"},{"id":"T24","span":{"begin":810,"end":813},"obj":"Body_part"},{"id":"T25","span":{"begin":870,"end":877},"obj":"Body_part"},{"id":"T26","span":{"begin":879,"end":882},"obj":"Body_part"},{"id":"T27","span":{"begin":929,"end":936},"obj":"Body_part"},{"id":"T28","span":{"begin":972,"end":975},"obj":"Body_part"},{"id":"T29","span":{"begin":1022,"end":1029},"obj":"Body_part"},{"id":"T30","span":{"begin":1031,"end":1034},"obj":"Body_part"},{"id":"T31","span":{"begin":1068,"end":1075},"obj":"Body_part"},{"id":"T32","span":{"begin":1077,"end":1080},"obj":"Body_part"},{"id":"T33","span":{"begin":1118,"end":1130},"obj":"Body_part"},{"id":"T34","span":{"begin":1142,"end":1145},"obj":"Body_part"},{"id":"T35","span":{"begin":1146,"end":1148},"obj":"Body_part"},{"id":"T36","span":{"begin":1177,"end":1189},"obj":"Body_part"},{"id":"T37","span":{"begin":1201,"end":1204},"obj":"Body_part"},{"id":"T38","span":{"begin":1205,"end":1207},"obj":"Body_part"},{"id":"T39","span":{"begin":1232,"end":1239},"obj":"Body_part"},{"id":"T40","span":{"begin":1241,"end":1244},"obj":"Body_part"},{"id":"T41","span":{"begin":1294,"end":1301},"obj":"Body_part"},{"id":"T42","span":{"begin":1303,"end":1306},"obj":"Body_part"},{"id":"T43","span":{"begin":1347,"end":1359},"obj":"Body_part"},{"id":"T44","span":{"begin":1371,"end":1374},"obj":"Body_part"},{"id":"T45","span":{"begin":1408,"end":1415},"obj":"Body_part"},{"id":"T46","span":{"begin":1417,"end":1420},"obj":"Body_part"},{"id":"T47","span":{"begin":1458,"end":1470},"obj":"Body_part"},{"id":"T48","span":{"begin":1482,"end":1485},"obj":"Body_part"},{"id":"T49","span":{"begin":1533,"end":1540},"obj":"Body_part"},{"id":"T50","span":{"begin":1542,"end":1545},"obj":"Body_part"},{"id":"T51","span":{"begin":1607,"end":1614},"obj":"Body_part"},{"id":"T52","span":{"begin":1616,"end":1619},"obj":"Body_part"},{"id":"T53","span":{"begin":1674,"end":1681},"obj":"Body_part"},{"id":"T54","span":{"begin":1683,"end":1686},"obj":"Body_part"}],"attributes":[{"id":"A10","pred":"fma_id","subj":"T10","obj":"http://purl.org/sig/ont/fma/fma62925"},{"id":"A11","pred":"fma_id","subj":"T11","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A12","pred":"fma_id","subj":"T12","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A13","pred":"fma_id","subj":"T13","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A14","pred":"fma_id","subj":"T14","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A15","pred":"fma_id","subj":"T15","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A16","pred":"fma_id","subj":"T16","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A17","pred":"fma_id","subj":"T17","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A18","pred":"fma_id","subj":"T18","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A19","pred":"fma_id","subj":"T19","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A20","pred":"fma_id","subj":"T20","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A21","pred":"fma_id","subj":"T21","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A22","pred":"fma_id","subj":"T22","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A23","pred":"fma_id","subj":"T23","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A24","pred":"fma_id","subj":"T24","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A25","pred":"fma_id","subj":"T25","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A26","pred":"fma_id","subj":"T26","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A27","pred":"fma_id","subj":"T27","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A28","pred":"fma_id","subj":"T28","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A29","pred":"fma_id","subj":"T29","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A30","pred":"fma_id","subj":"T30","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A31","pred":"fma_id","subj":"T31","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A32","pred":"fma_id","subj":"T32","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A33","pred":"fma_id","subj":"T33","obj":"http://purl.org/sig/ont/fma/fma62925"},{"id":"A34","pred":"fma_id","subj":"T34","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A35","pred":"fma_id","subj":"T35","obj":"http://purl.org/sig/ont/fma/fma66595"},{"id":"A36","pred":"fma_id","subj":"T36","obj":"http://purl.org/sig/ont/fma/fma62925"},{"id":"A37","pred":"fma_id","subj":"T37","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A38","pred":"fma_id","subj":"T38","obj":"http://purl.org/sig/ont/fma/fma66595"},{"id":"A39","pred":"fma_id","subj":"T39","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A40","pred":"fma_id","subj":"T40","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A41","pred":"fma_id","subj":"T41","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A42","pred":"fma_id","subj":"T42","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A43","pred":"fma_id","subj":"T43","obj":"http://purl.org/sig/ont/fma/fma62925"},{"id":"A44","pred":"fma_id","subj":"T44","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A45","pred":"fma_id","subj":"T45","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A46","pred":"fma_id","subj":"T46","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A47","pred":"fma_id","subj":"T47","obj":"http://purl.org/sig/ont/fma/fma62925"},{"id":"A48","pred":"fma_id","subj":"T48","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A49","pred":"fma_id","subj":"T49","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A50","pred":"fma_id","subj":"T50","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A51","pred":"fma_id","subj":"T51","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A52","pred":"fma_id","subj":"T52","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A53","pred":"fma_id","subj":"T53","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A54","pred":"fma_id","subj":"T54","obj":"http://purl.org/sig/ont/fma/fma84795"}],"text":"Table 1. 28 2019-nCoV peptides having exact matches with immunogenic SARS-CoV peptides.\nIEDB.peptide 2019-nCoV.pattern Antigen.Name Allele.Name\nTLACFVLAAV TLACFVLAAV Membrane glycoprotein HLA-A *02:01\nAFFGMSRIGMEVTPSGTW AFFGMSRIGMEVTPSGTW N protein\nALNTPKDHI ALNTPKDHI Nucleoprotein HLA-A *02:01\nAQFAPSASAFFGMSR AQFAPSASAFFGMSR nucleocapsid protein HLA class II\nAQFAPSASAFFGMSRIGM AQFAPSASAFFGMSRIGM N protein\nGMSRIGMEV GMSRIGMEV Nucleoprotein HLA-A *02:01\nILLNKHIDA ILLNKHIDA Nucleoprotein HLA-A *02:01\nIRQGTDYKHWPQIAQFA IRQGTDYKHWPQIAQFA N protein\nKHWPQIAQFAPSASAFF KHWPQIAQFAPSASAFF N protein\nLALLLLDRL LALLLLDRL Nucleoprotein HLA-A *02:01\nLLLDRLNQL LLLDRLNQL Nucleoprotein HLA-A *02:01\nLLNKHIDAYKTFPPTEPK LLNKHIDAYKTFPPTEPK N protein\nLQLPQGTTL LQLPQGTTL Nucleoprotein HLA-A *02:01\nRRPQGLPNNTASWFT RRPQGLPNNTASWFT nucleocapsid protein HLA class I\nYKTFPPTEPKKDKKKK YKTFPPTEPKKDKKKK N protein\nILLNKHID ILLNKHID Nucleoprotein HLA-A *02:01\nMEVTPSGTWL MEVTPSGTWL nucleocapsid protein HLA-B *40:01\nALNTLVKQL ALNTLVKQL S protein HLA-A *02:01\nFIAGLIAIV FIAGLIAIV Spike glycoprotein precursor HLA-A2\nLITGRLQSL LITGRLQSL Spike glycoprotein precursor HLA-A2\nNLNESLIDL NLNESLIDL S protein HLA-A *02:01\nQALNTLVKQLSSNFGAI QALNTLVKQLSSNFGAI S protein HLA-DRB1 *04:01\nRLNEVAKNL RLNEVAKNL Spike glycoprotein precursor HLA-A *02:01\nVLNDILSRL VLNDILSRL S protein HLA-A *02:01\nVVFLHVTYV VVFLHVTYV Spike glycoprotein precursor HLA-A *02:01\nGAALQIPFAMQMAYRF GAALQIPFAMQMAYRF S protein HLA-DRA *01:01/DRB1 *07:01\nMAYRFNGIGVTQNVLY MAYRFNGIGVTQNVLY S protein HLA-DRB1 *04:01\nQLIRAAEIRASANLAATK QLIRAAEIRASANLAATK S protein HLA-DRB1 *04:01\n*SARS-CoV: Severe acute respiratory syndrome coronavirus"}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T8","span":{"begin":70,"end":78},"obj":"Disease"},{"id":"T9","span":{"begin":1546,"end":1549},"obj":"Disease"},{"id":"T10","span":{"begin":1700,"end":1708},"obj":"Disease"},{"id":"T11","span":{"begin":1710,"end":1743},"obj":"Disease"}],"attributes":[{"id":"A8","pred":"mondo_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A9","pred":"mondo_id","subj":"T9","obj":"http://purl.obolibrary.org/obo/MONDO_0019440"},{"id":"A10","pred":"mondo_id","subj":"T10","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A11","pred":"mondo_id","subj":"T11","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"Table 1. 28 2019-nCoV peptides having exact matches with immunogenic SARS-CoV peptides.\nIEDB.peptide 2019-nCoV.pattern Antigen.Name Allele.Name\nTLACFVLAAV TLACFVLAAV Membrane glycoprotein HLA-A *02:01\nAFFGMSRIGMEVTPSGTW AFFGMSRIGMEVTPSGTW N protein\nALNTPKDHI ALNTPKDHI Nucleoprotein HLA-A *02:01\nAQFAPSASAFFGMSR AQFAPSASAFFGMSR nucleocapsid protein HLA class II\nAQFAPSASAFFGMSRIGM AQFAPSASAFFGMSRIGM N protein\nGMSRIGMEV GMSRIGMEV Nucleoprotein HLA-A *02:01\nILLNKHIDA ILLNKHIDA Nucleoprotein HLA-A *02:01\nIRQGTDYKHWPQIAQFA IRQGTDYKHWPQIAQFA N protein\nKHWPQIAQFAPSASAFF KHWPQIAQFAPSASAFF N protein\nLALLLLDRL LALLLLDRL Nucleoprotein HLA-A *02:01\nLLLDRLNQL LLLDRLNQL Nucleoprotein HLA-A *02:01\nLLNKHIDAYKTFPPTEPK LLNKHIDAYKTFPPTEPK N protein\nLQLPQGTTL LQLPQGTTL Nucleoprotein HLA-A *02:01\nRRPQGLPNNTASWFT RRPQGLPNNTASWFT nucleocapsid protein HLA class I\nYKTFPPTEPKKDKKKK YKTFPPTEPKKDKKKK N protein\nILLNKHID ILLNKHID Nucleoprotein HLA-A *02:01\nMEVTPSGTWL MEVTPSGTWL nucleocapsid protein HLA-B *40:01\nALNTLVKQL ALNTLVKQL S protein HLA-A *02:01\nFIAGLIAIV FIAGLIAIV Spike glycoprotein precursor HLA-A2\nLITGRLQSL LITGRLQSL Spike glycoprotein precursor HLA-A2\nNLNESLIDL NLNESLIDL S protein HLA-A *02:01\nQALNTLVKQLSSNFGAI QALNTLVKQLSSNFGAI S protein HLA-DRB1 *04:01\nRLNEVAKNL RLNEVAKNL Spike glycoprotein precursor HLA-A *02:01\nVLNDILSRL VLNDILSRL S protein HLA-A *02:01\nVVFLHVTYV VVFLHVTYV Spike glycoprotein precursor HLA-A *02:01\nGAALQIPFAMQMAYRF GAALQIPFAMQMAYRF S protein HLA-DRA *01:01/DRB1 *07:01\nMAYRFNGIGVTQNVLY MAYRFNGIGVTQNVLY S protein HLA-DRB1 *04:01\nQLIRAAEIRASANLAATK QLIRAAEIRASANLAATK S protein HLA-DRB1 *04:01\n*SARS-CoV: Severe acute respiratory syndrome coronavirus"}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T63","span":{"begin":23,"end":31},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T64","span":{"begin":79,"end":87},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T65","span":{"begin":172,"end":180},"obj":"http://purl.obolibrary.org/obo/UBERON_0000158"},{"id":"T66","span":{"begin":199,"end":200},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T67","span":{"begin":299,"end":300},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T68","span":{"begin":468,"end":469},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T69","span":{"begin":518,"end":519},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T70","span":{"begin":664,"end":665},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T71","span":{"begin":714,"end":715},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T72","span":{"begin":814,"end":815},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T73","span":{"begin":976,"end":977},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T74","span":{"begin":1035,"end":1036},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T75","span":{"begin":1081,"end":1082},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T76","span":{"begin":1146,"end":1148},"obj":"http://purl.obolibrary.org/obo/CLO_0001562"},{"id":"T77","span":{"begin":1205,"end":1207},"obj":"http://purl.obolibrary.org/obo/CLO_0001562"},{"id":"T78","span":{"begin":1245,"end":1246},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T79","span":{"begin":1375,"end":1376},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T80","span":{"begin":1421,"end":1422},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T81","span":{"begin":1486,"end":1487},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"text":"Table 1. 28 2019-nCoV peptides having exact matches with immunogenic SARS-CoV peptides.\nIEDB.peptide 2019-nCoV.pattern Antigen.Name Allele.Name\nTLACFVLAAV TLACFVLAAV Membrane glycoprotein HLA-A *02:01\nAFFGMSRIGMEVTPSGTW AFFGMSRIGMEVTPSGTW N protein\nALNTPKDHI ALNTPKDHI Nucleoprotein HLA-A *02:01\nAQFAPSASAFFGMSR AQFAPSASAFFGMSR nucleocapsid protein HLA class II\nAQFAPSASAFFGMSRIGM AQFAPSASAFFGMSRIGM N protein\nGMSRIGMEV GMSRIGMEV Nucleoprotein HLA-A *02:01\nILLNKHIDA ILLNKHIDA Nucleoprotein HLA-A *02:01\nIRQGTDYKHWPQIAQFA IRQGTDYKHWPQIAQFA N protein\nKHWPQIAQFAPSASAFF KHWPQIAQFAPSASAFF N protein\nLALLLLDRL LALLLLDRL Nucleoprotein HLA-A *02:01\nLLLDRLNQL LLLDRLNQL Nucleoprotein HLA-A *02:01\nLLNKHIDAYKTFPPTEPK LLNKHIDAYKTFPPTEPK N protein\nLQLPQGTTL LQLPQGTTL Nucleoprotein HLA-A *02:01\nRRPQGLPNNTASWFT RRPQGLPNNTASWFT nucleocapsid protein HLA class I\nYKTFPPTEPKKDKKKK YKTFPPTEPKKDKKKK N protein\nILLNKHID ILLNKHID Nucleoprotein HLA-A *02:01\nMEVTPSGTWL MEVTPSGTWL nucleocapsid protein HLA-B *40:01\nALNTLVKQL ALNTLVKQL S protein HLA-A *02:01\nFIAGLIAIV FIAGLIAIV Spike glycoprotein precursor HLA-A2\nLITGRLQSL LITGRLQSL Spike glycoprotein precursor HLA-A2\nNLNESLIDL NLNESLIDL S protein HLA-A *02:01\nQALNTLVKQLSSNFGAI QALNTLVKQLSSNFGAI S protein HLA-DRB1 *04:01\nRLNEVAKNL RLNEVAKNL Spike glycoprotein precursor HLA-A *02:01\nVLNDILSRL VLNDILSRL S protein HLA-A *02:01\nVVFLHVTYV VVFLHVTYV Spike glycoprotein precursor HLA-A *02:01\nGAALQIPFAMQMAYRF GAALQIPFAMQMAYRF S protein HLA-DRA *01:01/DRB1 *07:01\nMAYRFNGIGVTQNVLY MAYRFNGIGVTQNVLY S protein HLA-DRB1 *04:01\nQLIRAAEIRASANLAATK QLIRAAEIRASANLAATK S protein HLA-DRB1 *04:01\n*SARS-CoV: Severe acute respiratory syndrome coronavirus"}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T23","span":{"begin":23,"end":31},"obj":"Chemical"},{"id":"T24","span":{"begin":79,"end":87},"obj":"Chemical"},{"id":"T25","span":{"begin":181,"end":193},"obj":"Chemical"},{"id":"T26","span":{"begin":250,"end":257},"obj":"Chemical"},{"id":"T27","span":{"begin":355,"end":362},"obj":"Chemical"},{"id":"T28","span":{"begin":374,"end":376},"obj":"Chemical"},{"id":"T29","span":{"begin":419,"end":426},"obj":"Chemical"},{"id":"T30","span":{"begin":567,"end":574},"obj":"Chemical"},{"id":"T31","span":{"begin":615,"end":622},"obj":"Chemical"},{"id":"T32","span":{"begin":765,"end":772},"obj":"Chemical"},{"id":"T33","span":{"begin":870,"end":877},"obj":"Chemical"},{"id":"T34","span":{"begin":929,"end":936},"obj":"Chemical"},{"id":"T35","span":{"begin":1022,"end":1029},"obj":"Chemical"},{"id":"T36","span":{"begin":1068,"end":1075},"obj":"Chemical"},{"id":"T37","span":{"begin":1118,"end":1130},"obj":"Chemical"},{"id":"T38","span":{"begin":1177,"end":1189},"obj":"Chemical"},{"id":"T39","span":{"begin":1232,"end":1239},"obj":"Chemical"},{"id":"T40","span":{"begin":1294,"end":1301},"obj":"Chemical"},{"id":"T41","span":{"begin":1347,"end":1359},"obj":"Chemical"},{"id":"T42","span":{"begin":1408,"end":1415},"obj":"Chemical"},{"id":"T43","span":{"begin":1458,"end":1470},"obj":"Chemical"},{"id":"T44","span":{"begin":1533,"end":1540},"obj":"Chemical"},{"id":"T45","span":{"begin":1607,"end":1614},"obj":"Chemical"},{"id":"T46","span":{"begin":1674,"end":1681},"obj":"Chemical"}],"attributes":[{"id":"A23","pred":"chebi_id","subj":"T23","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A24","pred":"chebi_id","subj":"T24","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A25","pred":"chebi_id","subj":"T25","obj":"http://purl.obolibrary.org/obo/CHEBI_17089"},{"id":"A26","pred":"chebi_id","subj":"T26","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A27","pred":"chebi_id","subj":"T27","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A28","pred":"chebi_id","subj":"T28","obj":"http://purl.obolibrary.org/obo/CHEBI_74067"},{"id":"A29","pred":"chebi_id","subj":"T29","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A30","pred":"chebi_id","subj":"T30","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A31","pred":"chebi_id","subj":"T31","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A32","pred":"chebi_id","subj":"T32","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A33","pred":"chebi_id","subj":"T33","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A34","pred":"chebi_id","subj":"T34","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A35","pred":"chebi_id","subj":"T35","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A36","pred":"chebi_id","subj":"T36","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A37","pred":"chebi_id","subj":"T37","obj":"http://purl.obolibrary.org/obo/CHEBI_17089"},{"id":"A38","pred":"chebi_id","subj":"T38","obj":"http://purl.obolibrary.org/obo/CHEBI_17089"},{"id":"A39","pred":"chebi_id","subj":"T39","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A40","pred":"chebi_id","subj":"T40","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A41","pred":"chebi_id","subj":"T41","obj":"http://purl.obolibrary.org/obo/CHEBI_17089"},{"id":"A42","pred":"chebi_id","subj":"T42","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A43","pred":"chebi_id","subj":"T43","obj":"http://purl.obolibrary.org/obo/CHEBI_17089"},{"id":"A44","pred":"chebi_id","subj":"T44","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A45","pred":"chebi_id","subj":"T45","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A46","pred":"chebi_id","subj":"T46","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"}],"text":"Table 1. 28 2019-nCoV peptides having exact matches with immunogenic SARS-CoV peptides.\nIEDB.peptide 2019-nCoV.pattern Antigen.Name Allele.Name\nTLACFVLAAV TLACFVLAAV Membrane glycoprotein HLA-A *02:01\nAFFGMSRIGMEVTPSGTW AFFGMSRIGMEVTPSGTW N protein\nALNTPKDHI ALNTPKDHI Nucleoprotein HLA-A *02:01\nAQFAPSASAFFGMSR AQFAPSASAFFGMSR nucleocapsid protein HLA class II\nAQFAPSASAFFGMSRIGM AQFAPSASAFFGMSRIGM N protein\nGMSRIGMEV GMSRIGMEV Nucleoprotein HLA-A *02:01\nILLNKHIDA ILLNKHIDA Nucleoprotein HLA-A *02:01\nIRQGTDYKHWPQIAQFA IRQGTDYKHWPQIAQFA N protein\nKHWPQIAQFAPSASAFF KHWPQIAQFAPSASAFF N protein\nLALLLLDRL LALLLLDRL Nucleoprotein HLA-A *02:01\nLLLDRLNQL LLLDRLNQL Nucleoprotein HLA-A *02:01\nLLNKHIDAYKTFPPTEPK LLNKHIDAYKTFPPTEPK N protein\nLQLPQGTTL LQLPQGTTL Nucleoprotein HLA-A *02:01\nRRPQGLPNNTASWFT RRPQGLPNNTASWFT nucleocapsid protein HLA class I\nYKTFPPTEPKKDKKKK YKTFPPTEPKKDKKKK N protein\nILLNKHID ILLNKHID Nucleoprotein HLA-A *02:01\nMEVTPSGTWL MEVTPSGTWL nucleocapsid protein HLA-B *40:01\nALNTLVKQL ALNTLVKQL S protein HLA-A *02:01\nFIAGLIAIV FIAGLIAIV Spike glycoprotein precursor HLA-A2\nLITGRLQSL LITGRLQSL Spike glycoprotein precursor HLA-A2\nNLNESLIDL NLNESLIDL S protein HLA-A *02:01\nQALNTLVKQLSSNFGAI QALNTLVKQLSSNFGAI S protein HLA-DRB1 *04:01\nRLNEVAKNL RLNEVAKNL Spike glycoprotein precursor HLA-A *02:01\nVLNDILSRL VLNDILSRL S protein HLA-A *02:01\nVVFLHVTYV VVFLHVTYV Spike glycoprotein precursor HLA-A *02:01\nGAALQIPFAMQMAYRF GAALQIPFAMQMAYRF S protein HLA-DRA *01:01/DRB1 *07:01\nMAYRFNGIGVTQNVLY MAYRFNGIGVTQNVLY S protein HLA-DRB1 *04:01\nQLIRAAEIRASANLAATK QLIRAAEIRASANLAATK S protein HLA-DRB1 *04:01\n*SARS-CoV: Severe acute respiratory syndrome coronavirus"}

{"project":"LitCovid-sentences","denotations":[{"id":"T32","span":{"begin":0,"end":8},"obj":"Sentence"},{"id":"T33","span":{"begin":10,"end":88},"obj":"Sentence"},{"id":"T34","span":{"begin":89,"end":147},"obj":"Sentence"},{"id":"T35","span":{"begin":148,"end":207},"obj":"Sentence"},{"id":"T36","span":{"begin":208,"end":257},"obj":"Sentence"},{"id":"T37","span":{"begin":258,"end":307},"obj":"Sentence"},{"id":"T38","span":{"begin":308,"end":376},"obj":"Sentence"},{"id":"T39","span":{"begin":377,"end":426},"obj":"Sentence"},{"id":"T40","span":{"begin":427,"end":476},"obj":"Sentence"},{"id":"T41","span":{"begin":477,"end":526},"obj":"Sentence"},{"id":"T42","span":{"begin":527,"end":574},"obj":"Sentence"},{"id":"T43","span":{"begin":575,"end":622},"obj":"Sentence"},{"id":"T44","span":{"begin":623,"end":672},"obj":"Sentence"},{"id":"T45","span":{"begin":673,"end":722},"obj":"Sentence"},{"id":"T46","span":{"begin":723,"end":772},"obj":"Sentence"},{"id":"T47","span":{"begin":773,"end":822},"obj":"Sentence"},{"id":"T48","span":{"begin":823,"end":890},"obj":"Sentence"},{"id":"T49","span":{"begin":891,"end":936},"obj":"Sentence"},{"id":"T50","span":{"begin":937,"end":984},"obj":"Sentence"},{"id":"T51","span":{"begin":985,"end":1043},"obj":"Sentence"},{"id":"T52","span":{"begin":1044,"end":1089},"obj":"Sentence"},{"id":"T53","span":{"begin":1090,"end":1148},"obj":"Sentence"},{"id":"T54","span":{"begin":1149,"end":1207},"obj":"Sentence"},{"id":"T55","span":{"begin":1208,"end":1253},"obj":"Sentence"},{"id":"T56","span":{"begin":1254,"end":1318},"obj":"Sentence"},{"id":"T57","span":{"begin":1319,"end":1383},"obj":"Sentence"},{"id":"T58","span":{"begin":1384,"end":1429},"obj":"Sentence"},{"id":"T59","span":{"begin":1430,"end":1494},"obj":"Sentence"},{"id":"T60","span":{"begin":1495,"end":1568},"obj":"Sentence"},{"id":"T61","span":{"begin":1569,"end":1631},"obj":"Sentence"},{"id":"T62","span":{"begin":1632,"end":1698},"obj":"Sentence"},{"id":"T63","span":{"begin":1699,"end":1709},"obj":"Sentence"},{"id":"T64","span":{"begin":1710,"end":1755},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Table 1. 28 2019-nCoV peptides having exact matches with immunogenic SARS-CoV peptides.\nIEDB.peptide 2019-nCoV.pattern Antigen.Name Allele.Name\nTLACFVLAAV TLACFVLAAV Membrane glycoprotein HLA-A *02:01\nAFFGMSRIGMEVTPSGTW AFFGMSRIGMEVTPSGTW N protein\nALNTPKDHI ALNTPKDHI Nucleoprotein HLA-A *02:01\nAQFAPSASAFFGMSR AQFAPSASAFFGMSR nucleocapsid protein HLA class II\nAQFAPSASAFFGMSRIGM AQFAPSASAFFGMSRIGM N protein\nGMSRIGMEV GMSRIGMEV Nucleoprotein HLA-A *02:01\nILLNKHIDA ILLNKHIDA Nucleoprotein HLA-A *02:01\nIRQGTDYKHWPQIAQFA IRQGTDYKHWPQIAQFA N protein\nKHWPQIAQFAPSASAFF KHWPQIAQFAPSASAFF N protein\nLALLLLDRL LALLLLDRL Nucleoprotein HLA-A *02:01\nLLLDRLNQL LLLDRLNQL Nucleoprotein HLA-A *02:01\nLLNKHIDAYKTFPPTEPK LLNKHIDAYKTFPPTEPK N protein\nLQLPQGTTL LQLPQGTTL Nucleoprotein HLA-A *02:01\nRRPQGLPNNTASWFT RRPQGLPNNTASWFT nucleocapsid protein HLA class I\nYKTFPPTEPKKDKKKK YKTFPPTEPKKDKKKK N protein\nILLNKHID ILLNKHID Nucleoprotein HLA-A *02:01\nMEVTPSGTWL MEVTPSGTWL nucleocapsid protein HLA-B *40:01\nALNTLVKQL ALNTLVKQL S protein HLA-A *02:01\nFIAGLIAIV FIAGLIAIV Spike glycoprotein precursor HLA-A2\nLITGRLQSL LITGRLQSL Spike glycoprotein precursor HLA-A2\nNLNESLIDL NLNESLIDL S protein HLA-A *02:01\nQALNTLVKQLSSNFGAI QALNTLVKQLSSNFGAI S protein HLA-DRB1 *04:01\nRLNEVAKNL RLNEVAKNL Spike glycoprotein precursor HLA-A *02:01\nVLNDILSRL VLNDILSRL S protein HLA-A *02:01\nVVFLHVTYV VVFLHVTYV Spike glycoprotein precursor HLA-A *02:01\nGAALQIPFAMQMAYRF GAALQIPFAMQMAYRF S protein HLA-DRA *01:01/DRB1 *07:01\nMAYRFNGIGVTQNVLY MAYRFNGIGVTQNVLY S protein HLA-DRB1 *04:01\nQLIRAAEIRASANLAATK QLIRAAEIRASANLAATK S protein HLA-DRB1 *04:01\n*SARS-CoV: Severe acute respiratory syndrome coronavirus"}