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PMC:7111504 / 2556-3440 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
48 840-843 Gene denotes TCR Gene:6962
49 120-129 Species denotes 2019-nCoV Tax:2697049
50 336-389 Species denotes Severe acute respiratory syndrome-related coronavirus Tax:694009
51 391-399 Species denotes SARS CoV Tax:694009
52 436-445 Species denotes 2019-nCoV Tax:2697049
53 529-538 Species denotes 2019-nCoV Tax:2697049
54 625-629 Species denotes nCoV Tax:2697049
55 764-771 Species denotes 19 nCoV Tax:2697049

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T32 72-83 CHEBI:60816;CHEBI:60816 denotes immunogenic
T33 120-129 SP_7 denotes 2019-nCoV
T34 207-218 CHEBI:60816;CHEBI:60816 denotes immunogenic
T35 252-259 BV_9 denotes Epitope
T36 349-360 UBERON:0001004 denotes respiratory
T37 378-389 NCBITaxon:11118 denotes coronavirus
T38 391-399 SP_10 denotes SARS CoV
T39 436-445 SP_7 denotes 2019-nCoV
T40 483-487 SP_10 denotes SARS
T41 529-538 SP_7 denotes 2019-nCoV
T42 579-590 CHEBI:60816;CHEBI:60816 denotes immunogenic
T43 594-602 CL:0001034 denotes in vitro
T44 603-609 CL:0000084;BV_23 denotes T cell
T45 610-616 BV_23 denotes assays
T46 678-689 CHEBI:60816;CHEBI:60816 denotes immunogenic
T47 728-742 BV_15 denotes immunogenicity
T48 797-808 CHEBI:60816;CHEBI:60816 denotes immunogenic
T54000 72-83 CHEBI:60816;CHEBI:60816 denotes immunogenic
T55605 120-129 SP_7 denotes 2019-nCoV
T59948 207-218 CHEBI:60816;CHEBI:60816 denotes immunogenic
T85994 252-259 BV_9 denotes Epitope
T37622 349-360 UBERON:0001004 denotes respiratory
T60436 378-389 NCBITaxon:11118 denotes coronavirus
T19609 391-399 SP_10 denotes SARS CoV
T53947 436-445 SP_7 denotes 2019-nCoV
T59966 483-487 SP_10 denotes SARS
T58907 529-538 SP_7 denotes 2019-nCoV
T79712 579-590 CHEBI:60816;CHEBI:60816 denotes immunogenic
T51170 594-602 CL:0001034 denotes in vitro
T50252 603-609 CL:0000084;BV_23 denotes T cell
T88075 610-616 BV_23 denotes assays
T93294 678-689 CHEBI:60816;CHEBI:60816 denotes immunogenic
T3928 728-742 BV_15 denotes immunogenicity
T65499 797-808 CHEBI:60816;CHEBI:60816 denotes immunogenic

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T5 605-609 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T3 336-369 Disease denotes Severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T4 391-395 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T5 483-487 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T36 106-114 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T37 142-143 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T38 173-181 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T39 219-227 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T40 452-460 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T41 496-504 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T42 603-609 http://purl.obolibrary.org/obo/CL_0000084 denotes T cell
T43 622-624 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T44 630-638 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T45 646-647 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T46 690-698 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T47 708-709 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T48 772-780 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T9 106-114 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T10 173-181 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T11 219-227 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T12 452-460 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T13 496-504 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T14 630-638 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T15 690-698 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T16 772-780 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T23 0-130 Sentence denotes In this regard, we report our recent effort to computationally identify immunogenic and/or cross-reactive peptides from 2019-nCoV.
T24 131-461 Sentence denotes We provide a detailed screen of candidate peptides based on comparison with immunogenic peptides deposited in the Immune Epitope Database and Analysis Resource (IEDB) database including those derived from Severe acute respiratory syndrome-related coronavirus (SARS CoV) along with de novo prediction from 2019-nCoV 9-mer peptides.
T25 462-884 Sentence denotes Here, we found i) 28 SARS-derived peptides having exact matches in 2019-nCoV proteome previously characterized to be immunogenic by in vitro T cell assays, ii) 22 nCoV peptides having a high sequence similarity with immunogenic peptides but with a greater predicted immunogenicity score, and iii) 44 + 19 nCoV peptides predicted to be immunogenic by the iPred algorithm and 1G4 TCR positional weight matrices respectively.