PMC:7111504 / 20983-21502
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 312 | 16-25 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 313 | 168-177 | Chemical | denotes | NetMHCpan | |
| 314 | 368-377 | Chemical | denotes | NetMHCpan | |
| 315 | 388-389 | Chemical | denotes | L | MESH:D007930 |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T217 | 16-25 | SP_7 | denotes | 2019-nCoV |
| T218 | 26-31 | NCBITaxon:10239 | denotes | virus |
| T219 | 108-112 | SP_9 | denotes | mers |
| T80024 | 16-25 | SP_7 | denotes | 2019-nCoV |
| T4859 | 26-31 | NCBITaxon:10239 | denotes | virus |
| T7055 | 108-112 | SP_9 | denotes | mers |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T105 | 32-39 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T106 | 399-410 | Body_part | denotes | amino acids | http://purl.org/sig/ont/fma/fma82739 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T259 | 26-31 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T260 | 62-63 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T261 | 65-66 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T262 | 118-119 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T263 | 276-284 | http://purl.obolibrary.org/obo/PR_000018263 | denotes | peptides |
| T264 | 301-302 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T145 | 32-39 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T146 | 276-284 | Chemical | denotes | peptides | http://purl.obolibrary.org/obo/CHEBI_16670 |
| T147 | 399-410 | Chemical | denotes | amino acids | http://purl.obolibrary.org/obo/CHEBI_33709 |
| T148 | 399-404 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T149 | 405-410 | Chemical | denotes | acids | http://purl.obolibrary.org/obo/CHEBI_37527 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T221 | 0-143 | Sentence | denotes | We then scanned 2019-nCoV virus protein sequence with each of B, A and K PWMs and associated each of 9613 9-mers with a cross reactivity score. |
| T222 | 144-232 | Sentence | denotes | At the same we utilized NetMHCpan and associated each 9-mer with its presentation score. |
| T223 | 233-431 | Sentence | denotes | Our final list of cross-reactive candidate peptides were those with a cross-reactivity sore >= 0.8 and reported as strong binders from NetMHCpan and have ‘L’ and ‘V’ amino acids at anchor positions. |
| T224 | 432-519 | Sentence | denotes | The custom R codes are accessible from GitHub repository (see software availability 4). |