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PMC:7111504 / 10225-10820 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
145 503-508 Gene denotes HLA-A Gene:3105
146 516-521 Gene denotes HLA-A Gene:3105
147 529-534 Gene denotes HLA-B Gene:3106
148 542-547 Gene denotes HLA-B Gene:3106
149 558-563 Gene denotes HLA-C Gene:3107
150 325-328 Gene denotes MHC Gene:3107
151 106-115 Species denotes 2019-nCov Tax:2697049
152 158-167 Species denotes 2019-nCoV Tax:2697049
153 367-376 Chemical denotes NetMHCpan

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T113 73-84 CHEBI:60816;CHEBI:60816 denotes immunogenic
T114 106-115 SP_7 denotes 2019-nCov
T115 148-152 SP_9 denotes mers
T116 158-167 SP_7 denotes 2019-nCoV
T117 261-275 BV_15 denotes immunogenicity
T118 325-328 GO:0042611 denotes MHC
T119 434-444 SO:0001024 denotes haplotypes
T120 503-508 PR:000002009 denotes HLA-A
T121 516-521 PR:000002009 denotes HLA-A
T122 529-534 PR:000002010 denotes HLA-B
T123 542-547 PR:000002010 denotes HLA-B
T124 558-563 PR:000002011 denotes HLA-C
T125 570-577 SO:0001023 denotes alleles
T4279 73-84 CHEBI:60816;CHEBI:60816 denotes immunogenic
T6626 106-115 SP_7 denotes 2019-nCov
T90148 148-152 SP_9 denotes mers
T85766 158-167 SP_7 denotes 2019-nCoV
T90107 261-275 BV_15 denotes immunogenicity
T45797 325-328 GO:0042611 denotes MHC
T63293 434-444 SO:0001024 denotes haplotypes
T59388 503-508 PR:000002009 denotes HLA-A
T64753 516-521 PR:000002009 denotes HLA-A
T67356 529-534 PR:000002010 denotes HLA-B
T99742 542-547 PR:000002010 denotes HLA-B
T8696 558-563 PR:000002011 denotes HLA-C
T3771 570-577 SO:0001023 denotes alleles

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T55 196-207 Body_part denotes amino acids http://purl.org/sig/ont/fma/fma82739
T56 229-239 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T57 325-328 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T58 395-398 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T59 503-506 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T60 516-519 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T61 529-532 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T62 542-545 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T63 558-561 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T138 3-4 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T139 53-54 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T140 85-93 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T141 182-183 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T142 285-293 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T143 423-430 http://purl.obolibrary.org/obo/CLO_0009985 denotes focused
T144 507-508 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T145 520-521 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T146 533-534 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T147 546-547 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T148 590-593 http://purl.obolibrary.org/obo/CLO_0001302 denotes 3 4

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T75 85-93 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T76 196-207 Chemical denotes amino acids http://purl.obolibrary.org/obo/CHEBI_33709
T77 196-201 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T78 202-207 Chemical denotes acids http://purl.obolibrary.org/obo/CHEBI_37527
T79 229-239 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T80 229-234 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T81 235-239 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T82 285-293 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T116 0-134 Sentence denotes As a complementary reciprocal approach, we conducted a de novo search of immunogenic peptides against the 2019-nCov proteome sequence.
T117 135-256 Sentence denotes We scanned 9-mers from 2019-nCoV proteome with a window of 9 amino acids and step length of 1 amino acid (9613 in total).
T118 257-405 Sentence denotes The immunogenicity of 9-mer peptides were predicted using iPred and MHC presentation scores were gauged using NetMHCpan 4.0 6 for various HLA types.
T119 406-595 Sentence denotes In this task, we focused on haplotypes common in Chinese and European populations, which include HLA-A*02:01, HLA-A*01:01, HLA-B*07:02, HLA-B*40:01 and HLA-C*07:02 alleles (Data Table 3 4).

MyTest

Id Subject Object Predicate Lexical cue
32269766-28978689-30420972 381-383 28978689 denotes 6

2_test

Id Subject Object Predicate Lexical cue
32269766-28978689-30420972 381-382 28978689 denotes 6