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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T558 21103-21107 SP_9 denotes MERS
T557 21112-21116 SP_10 denotes SARS
T556 21168-21172 SP_10 denotes SARS
T555 21372-21379 NCBITaxon:33208 denotes animals
T554 21385-21391 NCBITaxon:9606 denotes humans
T553 21485-21496 NCBITaxon:11118 denotes coronavirus
T552 21542-21546 CHEBI:33290;CHEBI:33290 denotes food
T551 21612-21621 GO:0007631 denotes consuming
T550 21654-21661 NCBITaxon:33208 denotes animals
T549 21727-21731 CHEBI:33290;CHEBI:33290 denotes food
T548 21732-21740 SO:0000857 denotes homology
T547 21744-21749 GO:0007631 denotes eaten
T546 21765-21769 CHEBI:33290;CHEBI:33290 denotes food
T545 21771-21776 GO:0007631 denotes eaten
T544 21819-21827 SP_1 denotes pangolin
T543 21891-21899 UBERON:0000926 denotes meridian
T542 21914-21919 UBERON:0002107 denotes liver
T541 21944-21952 UBERON:0000970 denotes eyesight
T540 21988-21999 GO:0007631 denotes consumption
T539 22016-22023 NCBITaxon:33208 denotes animals
T538 22209-22220 GO:0065007 denotes controlling
T537 22409-22422 UBERON:0000467 denotes health system
T536 22491-22495 UBERON:0001456 denotes Face
T535 22669-22673 UBERON:0002398 denotes hand
T534 22893-22899 NCBITaxon:9606 denotes person
T533 22943-22947 UBERON:0002398 denotes hand
T532 22964-22975 UBERON:0001004 denotes respiratory
T531 22992-22996 SP_10 denotes SARS
T530 23283-23290 NCBITaxon:1 denotes persons
T529 23441-23452 NCBITaxon:11118 denotes coronavirus
T528 23695-23702 NCBITaxon:species denotes species
T527 23703-23708 NCBITaxon:10239 denotes viral
T526 23773-23777 SP_2;NCBITaxon:9397 denotes bats
T506 16938-16943 NCBITaxon:10239 denotes viral
T505 16985-16996 NCBITaxon:11118 denotes coronavirus
T504 17116-17121 NCBITaxon:10239 denotes viral
T503 17159-17166 CHEBI:2511;DG_49;CHEBI:2511 denotes arbidol
T502 17254-17265 NCBITaxon:11118 denotes coronavirus
T501 17369-17376 DG_49 denotes arbidol
T500 17385-17396 NCBITaxon:11118 denotes coronavirus
T499 17513-17517 CHEBI:23888;CHEBI:23888;GO:0017144 denotes drug
T498 17518-17529 GO:0017144 denotes development
T497 17574-17579 CHEBI:23888;CHEBI:23888 denotes drugs
T496 17594-17607 NCBITaxon:11118 denotes coronaviruses
T495 17637-17641 SP_10 denotes SARS
T494 17679-17683 SP_9 denotes MERS
T493 17685-17696 NCBITaxon:11118 denotes coronavirus
T492 17723-17727 SP_9 denotes MERS
T491 17746-17750 SP_10 denotes SARS
T490 17757-17768 NCBITaxon:11118 denotes coronavirus
T489 17788-17791 SP_2 denotes bat
T488 17955-17959 SP_10 denotes SARS
T487 17964-17968 SP_9 denotes MERS
T486 17969-17982 NCBITaxon:11118 denotes coronaviruses
T485 18026-18037 NCBITaxon:11118 denotes coronavirus
T484 18105-18109 SP_9 denotes MERS
T483 18131-18140 CHEBI:31781;DG_23;CHEBI:31781 denotes lopinavir
T482 18171-18180 CHEBI:35222;CHEBI:35222 denotes inhibitor
T481 18182-18191 CHEBI:45409;DG_30;CHEBI:45409 denotes ritonavir
T480 18193-18208 CHEBI:38559;CHEBI:38559 denotes cytochrome P450
T479 18247-18256 DG_23 denotes lopinavir
T478 18262-18274 PR:000008924 denotes interferon‐β
T477 18378-18387 CHEBI:36357;CHEBI:36357 denotes compounds
T476 18407-18416 CHEBI:36357;CHEBI:36357 denotes compounds
T475 18433-18444 NCBITaxon:11118 denotes coronavirus
T474 18461-18466 CHEBI:23888;CHEBI:23888 denotes drugs
T473 18512-18517 NCBITaxon:10239 denotes viral
T472 18527-18537 CHEBI:37670;CHEBI:37670 denotes inhibitors
T471 18861-18866 NCBITaxon:10239 denotes virus
T470 18983-18994 NCBITaxon:11118 denotes coronavirus
T469 19085-19095 DG_28 denotes remdesivir
T468 19126-19137 DG_10;CHEBI:3638;CHEBI:3638 denotes chloroquine
T467 19175-19186 NCBITaxon:11118 denotes coronavirus
T466 19230-19240 DG_28 denotes Remdesivir
T465 19249-19254 NCBITaxon:10239 denotes viral
T464 19309-19320 DG_10;CHEBI:3638;CHEBI:3638 denotes chloroquine
T463 19376-19387 DG_10;CHEBI:3638;CHEBI:3638 denotes chloroquine
T462 19400-19418 GO:0005765 denotes lysosome membranes
T461 19444-19449 NCBITaxon:10239;GO:0035376 denotes viral
T460 19450-19455 GO:0035376 denotes entry
T459 19512-19522 DG_28 denotes remdesivir
T458 19553-19557 SP_9 denotes MERS
T457 19558-19569 NCBITaxon:11118 denotes coronavirus
T456 19588-19597 CHEBI:37670;CHEBI:37670 denotes inhibitor
T455 19598-19607 DG_23;CHEBI:31781;CHEBI:31781 denotes lopinavir
T454 19622-19631 DG_30;NCBITaxon:7729 denotes ritonavir
T453 19670-19675 NCBITaxon:10088 denotes mouse
T452 19695-19700 NCBITaxon:10088 denotes mouse
T451 19701-19705 SP_9 denotes MERS
T450 19722-19732 DG_28 denotes remdesivir
T449 19742-19751 UBERON:0002048 denotes pulmonary
T448 19770-19774 UBERON:0002048 denotes lung
T447 19775-19780 NCBITaxon:10239 denotes viral
T446 19808-19812 UBERON:0002048 denotes lung
T445 19860-19870 DG_28 denotes remdesivir
T444 19897-19901 SP_9;NCBITaxon:8088 denotes MERS
T443 19902-19907 NCBITaxon:10376 denotes virus
T442 19919-19925 NCBITaxon:7729 denotes rhesus
T441 19926-19933 NCBITaxon:9527 denotes monkeys
T440 19956-19961 NCBITaxon:10239 denotes viral
T439 19976-19980 UBERON:0002048 denotes lung
T438 19995-19999 UBERON:0002048 denotes lung
T437 20084-20091 NCBITaxon:33208 denotes animals
T436 20130-20140 DG_28 denotes remdesivir
T435 20152-20157 NCBITaxon:10239 denotes viral
T434 20208-20214 NCBITaxon:7729 denotes rhesus
T433 20215-20222 NCBITaxon:9527 denotes monkeys
T432 20330-20340 DG_28 denotes remdesivir
T431 20426-20437 NCBITaxon:11118 denotes coronavirus
T430 20757-20761 SP_10 denotes SARS
T429 20780-20784 CHEBI:23888;CHEBI:23888 denotes drug
T428 20929-20943 GO:0006955 denotes host responses
T427 21038-21049 NCBITaxon:11118 denotes coronavirus
T364 12706-12717 NCBITaxon:11118 denotes coronavirus
T363 12848-12859 UBERON:0001004 denotes respiratory
T362 12987-12992 UBERON:0001988 denotes stool
T361 13004-13009 NCBITaxon:10239 denotes virus
T360 13076-13079 UBERON:0001555 denotes gut
T359 13103-13107 UBERON:0002048 denotes lung
T358 13133-13144 NCBITaxon:11118 denotes coronavirus
T357 13208-13217 GO:0043335 denotes unfolding
T356 13295-13299 UBERON:0000165 denotes oral
T355 13378-13382 G_3;PG_10;PR:000003622 denotes ACE2
T354 13383-13387 GO:0018995 denotes host
T353 13411-13422 NCBITaxon:11118 denotes coronavirus
T352 13433-13442 GO:0010467 denotes expressed
T351 13446-13449 UBERON:0001555 denotes gut
T350 13450-13461 CL:0000584 denotes enterocytes
T349 13586-13595 SP_7 denotes 2019‐nCoV
T348 13625-13631 UBERON:0001005 denotes airway
T347 14296-14305 SP_7 denotes 2019‐nCoV
T346 14515-14521 NCBITaxon:1 denotes person
T345 14577-14584 NCBITaxon:1 denotes persons
T344 14604-14611 NCBITaxon:9606 denotes persons
T343 14737-14748 NCBITaxon:11118 denotes coronavirus
T342 15359-15365 NCBITaxon:9606 denotes people
T341 15568-15579 NCBITaxon:11118 denotes coronavirus
T340 15592-15603 UBERON:0001004 denotes respiratory
T309 9921-9932 NCBITaxon:11118 denotes coronavirus
T308 10099-10104 NCBITaxon:10239 denotes virus
T307 10487-10494 NCBITaxon:1 denotes persons
T306 10503-10514 UBERON:0001004 denotes respiratory
T305 10652-10656 UBERON:0002415 denotes tail
T304 10988-11000 GO:0000003 denotes reproduction
T303 11347-11358 UBERON:0001004 denotes respiratory
T302 11453-11459 UBERON:0007023 denotes adults
T301 11774-11779 SP_6;NCBITaxon:9606 denotes human
T300 11783-11788 SP_6;NCBITaxon:9606 denotes human
T299 11789-11794 NCBITaxon:10239 denotes virus
T298 11813-11818 NCBITaxon:10239 denotes virus
T297 11840-11854 UBERON:0001728 denotes nasopharyngeal
T296 11871-11877 UBERON:0000341 denotes throat
T295 11894-11899 UBERON:0001977 denotes serum
T294 11915-11920 UBERON:0001088 denotes urine
T293 11924-11929 UBERON:0001988 denotes stool
T292 11997-12002 NCBITaxon:10239 denotes virus
T291 12081-12086 NCBITaxon:10239 denotes virus
T290 12115-12121 UBERON:0001836 denotes saliva
T289 12145-12150 NCBITaxon:10239 denotes viral
T288 12179-12184 NCBITaxon:10239 denotes viral
T287 12199-12205 UBERON:0001836 denotes saliva
T263 7409-7418 SP_7 denotes 2019‐nCoV
T262 7774-7785 UBERON:0001004 denotes respiratory
T261 7910-7914 GO:0016265 denotes died
T260 7964-7975 CL:0000542 denotes lymphocytes
T259 7995-8000 UBERON:0000178 denotes blood
T258 8177-8186 SP_7 denotes 2019‐nCoV
T257 8716-8721 GO:0016265 denotes death
T256 8736-8741 UBERON:0000062 denotes organ
T255 8804-8815 NCBITaxon:11118 denotes coronavirus
T254 9346-9351 UBERON:0000170 denotes lungs
T253 9430-9434 GO:0016265 denotes died
T252 9493-9507 UBERON:0004535 denotes cardiovascular
T251 9659-9668 SP_7 denotes 2019‐nCoV
T204 2017-2028 NCBITaxon:11118 denotes coronavirus
T203 2246-2251 NCBITaxon:10239 denotes viral
T202 2252-2258 SO:0001026 denotes genome
T201 2339-2361 UBERON:0004821;BV_4 denotes bronchoalveolar lavage
T200 2362-2367 BV_4;UBERON:0006314 denotes fluid
T199 2369-2373 UBERON:0001348;BV_4 denotes BALF
T198 2393-2398 NCBITaxon:10239 denotes virus
T197 2412-2417 SP_6;NCBITaxon:9606 denotes human
T196 2418-2424 UBERON:0001005 denotes airway
T195 2425-2435 UBERON:0000483;CL:0002368 denotes epithelial
T194 2436-2441 CL:0002368 denotes cells
T193 2471-2478 SO:0001026 denotes genomes
T192 2592-2600 SO:0000984 denotes stranded
T191 2605-2612 SO:0001026 denotes genomes
T190 2628-2633 NCBITaxon:10239 denotes viral
T189 2634-2641 SO:0001026 denotes genomic
T188 2675-2680 SP_6;NCBITaxon:9606 denotes human
T187 2708-2711 BV_22 denotes RNA
T186 2712-2717 BV_22;NCBITaxon:10239 denotes virus
T185 2767-2772 SP_6;NCBITaxon:9606 denotes human
T184 2852-2858 NCBITaxon:33208 denotes animal
T183 2871-2877 NCBITaxon:9606 denotes humans
T182 2879-2890 SO:0000704 denotes Geneticists
T181 2988-2993 NCBITaxon:10239 denotes virus
T180 2998-3011 NCBITaxon:11118 denotes coronaviruses
T179 3026-3030 SP_2;NCBITaxon:6960 denotes bats
T178 3107-3115 SO:0001060 denotes isolates
T177 3128-3133 NCBITaxon:10239 denotes viral
T176 3134-3145 NCBITaxon:species denotes taxonomists
T175 3165-3176 NCBITaxon:11118 denotes coronavirus
T174 3186-3191 NCBITaxon:10239 denotes viral
T173 3192-3199 NCBITaxon:species denotes species
T172 3260-3264 SP_10 denotes SARS
T171 3304-3314 NCBITaxon:10633 denotes SARS virus
T170 3387-3391 SP_2;NCBITaxon:9397 denotes bats
T169 3451-3462 NCBITaxon:11118 denotes coronavirus
T168 3464-3468 SP_2;NCBITaxon:9397 denotes bats
T167 3539-3543 SP_2;NCBITaxon:9397 denotes bats
T166 3568-3572 CHEBI:33290;CHEBI:33290 denotes food
T165 3617-3623 NCBITaxon:33208 denotes animal
T164 3649-3654 SP_6;NCBITaxon:9606 denotes human
T163 3689-3693 UBERON:0002107 denotes Live
T162 3825-3831 NCBITaxon:8570 denotes snakes
T161 3835-3844 SP_1 denotes pangolins
T160 3886-3897 NCBITaxon:11118 denotes coronavirus
T159 3981-3992 NCBITaxon:11118 denotes Coronavirus
T158 4074-4087 NCBITaxon:11118 denotes coronaviruses
T157 4144-4149 NCBITaxon:10239 denotes viral
T156 4159-4168 NCBITaxon:2 denotes bacterial
T155 4169-4180 UBERON:0001004;GO:0045333 denotes respiratory
T154 4198-4205 NCBITaxon:10239 denotes viruses
T153 4269-4274 SP_6;NCBITaxon:9606 denotes human
T152 4275-4281 UBERON:0001005 denotes airway
T151 4282-4292 UBERON:0000483;CL:0002368 denotes epithelial
T150 4293-4298 CL:0002368 denotes cells
T149 4330-4335 NCBITaxon:10239 denotes virus
T148 4350-4356 GO:0005929 denotes cilium
T147 4487-4493 SO:0001026 denotes genome
T146 4515-4526 NCBITaxon:11118 denotes coronavirus
T145 4573-4588 UBERON:0002186 denotes bronchoalveolar
T144 4589-4594 UBERON:0006314 denotes fluid
T143 4709-4714 NCBITaxon:10239 denotes viral
T142 4725-4729 SO:0000704 denotes gene
T141 4807-4812 SP_6;NCBITaxon:9606 denotes human
T140 4813-4842 PR:000001322 denotes angiotensin‐converting enzyme
T139 4847-4851 PR:000003622;G_3;PG_10 denotes ACE2
T138 4986-4993 NCBITaxon:10239 denotes viruses
T137 5123-5127 CHEBI:33290;CHEBI:33290 denotes food
T136 5172-5176 BV_4 denotes BALF
T135 5185-5198 NCBITaxon:11118 denotes coronaviruses
T134 5270-5281 NCBITaxon:11118 denotes coronavirus
T133 5309-5316 SO:0000112 denotes primers
T132 5336-5342 SO:0000842 denotes region
T131 5352-5356 SO:0000704 denotes gene
T130 5464-5469 NCBITaxon:10239 denotes virus
T129 5483-5487 BV_4 denotes BALF
T128 5505-5509 UBERON:0000165 denotes oral
T127 5578-5581 GO:0071735 denotes IgM
T126 5612-5615 GO:0071735 denotes IgG
T125 5667-5672 NCBITaxon:10239 denotes viral
T124 5696-5703 CHEBI:59132;CHEBI:59132 denotes antigen
T123 5736-5739 GO:0071735 denotes IgM
T122 5963-5968 NCBITaxon:10239 denotes virus
T121 6019-6023 CL_6 denotes Vero
T120 6066-6071 NCBITaxon:10239 denotes virus
T119 6114-6124 GO:0042571 denotes antibodies
T118 6203-6208 NCBITaxon:10239 denotes virus
T117 6266-6271 UBERON:0001977 denotes serum
T116 6272-6282 GO:0042571 denotes antibodies
T115 6338-6349 NCBITaxon:11118 denotes coronavirus
T114 6390-6400 GO:0010467 denotes expressing
T113 6405-6409 G_3;PG_10;PR:000003622 denotes ACE2
T112 6421-6426 SP_6;NCBITaxon:9606 denotes human
T111 6428-6431 SP_2 denotes bat
T110 6454-6459 NCBITaxon:10088 denotes mouse
T109 6495-6506 NCBITaxon:11118 denotes coronavirus
T108 6556-6560 SP_10 denotes SARS
T107 6561-6572 NCBITaxon:11118 denotes coronavirus
T106 6636-6647 NCBITaxon:11118 denotes coronavirus
T105 6648-6655 SO:0001026 denotes genomes
T104 6787-6794 SO:0001026 denotes genomes
T103 7089-7096 SO:0001026 denotes genomes
T102 7110-7123 NCBITaxon:11118 denotes coronaviruses
T101 7129-7139 NCBITaxon:10633 denotes SARS virus
T100 7224-7229 NCBITaxon:10239 denotes viral
T99 7230-7236 SO:0001026 denotes genome
T49 778-785 NCBITaxon:33208 denotes animals
T48 838-843 NCBITaxon:10239 denotes virus
T32 1453-1464 NCBITaxon:11118 denotes coronavirus
T31 1543-1547 SP_10 denotes SARS
T30 1548-1559 NCBITaxon:11118 denotes coronavirus
T29 1584-1594 SP_7 denotes SARS‐CoV‐2
T28 1635-1639 SP_10;NCBITaxon:10633 denotes SARS
T27 1640-1645 NCBITaxon:10239 denotes virus
T26 1716-1721 NCBITaxon:10239 denotes virus
T7 137-143 NCBITaxon:33208 denotes animal
T6 147-152 SP_6;NCBITaxon:9606 denotes human
T5 171-182 NCBITaxon:11118 denotes coronavirus
T4 219-225 NCBITaxon:33208 denotes animal
T8 10-21 NCBITaxon:11118 denotes Coronavirus
T47 885-890 SP_6;NCBITaxon:9606 denotes human
T46 930-941 UBERON:0001004 denotes respiratory
T45 952-956 SP_10 denotes SARS
T44 1007-1013 NCBITaxon:33208 denotes animal
T43 1025-1029 SP_10 denotes SARS
T42 1035-1040 NCBITaxon:10239 denotes viral
T41 1069-1072 SP_2 denotes bat
T40 1073-1084 NCBITaxon:11118 denotes coronavirus
T39 1145-1150 NCBITaxon:10239 denotes virus
T38 1182-1191 SP_7 denotes 2019‐nCoV
T37 1202-1213 NCBITaxon:11118 denotes coronavirus
T36 1242-1252 SP_7 denotes SARS‐CoV‐2
T35 1299-1306 NCBITaxon:10239 denotes Viruses
T34 1308-1316 SP_7 denotes COVID‐19
T33 1391-1402 NCBITaxon:11118 denotes coronavirus

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 1059-1063 Body_part denotes back http://purl.org/sig/ont/fma/fma25056
T2 1946-1952 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T3 2252-2258 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T4 2305-2308 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T5 2425-2441 Body_part denotes epithelial cells http://purl.org/sig/ont/fma/fma66768
T6 2436-2441 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T7 2471-2478 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T8 2530-2541 Body_part denotes nucleotides http://purl.org/sig/ont/fma/fma82740
T9 2569-2579 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T10 2601-2604 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T11 2605-2612 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T12 2708-2711 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T13 4282-4298 Body_part denotes epithelial cells http://purl.org/sig/ont/fma/fma66768
T14 4293-4298 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T15 4350-4356 Body_part denotes cilium http://purl.org/sig/ont/fma/fma67181
T16 4487-4493 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T17 4683-4687 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T18 4725-4729 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T19 4775-4782 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257
T20 4853-4860 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T21 5352-5356 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T22 5578-5581 Body_part denotes IgM http://purl.org/sig/ont/fma/fma62873
T23 5612-5615 Body_part denotes IgG http://purl.org/sig/ont/fma/fma62872
T24 5736-5739 Body_part denotes IgM http://purl.org/sig/ont/fma/fma62873
T25 6024-6028 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T26 6081-6086 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T27 6266-6271 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T28 6295-6300 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T29 6356-6360 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T30 6410-6417 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T31 6517-6524 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T32 6530-6534 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T33 6648-6655 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T34 6787-6794 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T35 7089-7096 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T36 7159-7169 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T37 7208-7216 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T38 7230-7236 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T39 7964-7975 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T40 7995-8000 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T41 8018-8026 Body_part denotes cytokine http://purl.org/sig/ont/fma/fma84050
T42 8736-8741 Body_part denotes organ http://purl.org/sig/ont/fma/fma67498
T43 9346-9351 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T44 11871-11877 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T45 11894-11899 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T46 11915-11920 Body_part denotes urine http://purl.org/sig/ont/fma/fma12274
T47 11924-11929 Body_part denotes stool http://purl.org/sig/ont/fma/fma64183
T48 12115-12121 Body_part denotes saliva http://purl.org/sig/ont/fma/fma59862
T49 12199-12205 Body_part denotes saliva http://purl.org/sig/ont/fma/fma59862
T50 12987-12992 Body_part denotes stool http://purl.org/sig/ont/fma/fma64183
T51 13076-13079 Body_part denotes gut http://purl.org/sig/ont/fma/fma7199
T52 13103-13107 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T53 13446-13449 Body_part denotes gut http://purl.org/sig/ont/fma/fma7199
T54 13450-13461 Body_part denotes enterocytes http://purl.org/sig/ont/fma/fma62122
T55 14391-14395 Body_part denotes back http://purl.org/sig/ont/fma/fma25056
T56 17884-17892 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T57 18488-18498 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T58 18895-18899 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712
T59 19067-19077 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T60 19255-19258 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T61 19400-19418 Body_part denotes lysosome membranes http://purl.org/sig/ont/fma/fma67156
T62 19400-19408 Body_part denotes lysosome http://purl.org/sig/ont/fma/fma63836
T63 19494-19504 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T64 19650-19654 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T65 19770-19774 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T66 19808-19812 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T67 19976-19980 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T68 19995-19999 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T69 20989-20997 Body_part denotes cytokine http://purl.org/sig/ont/fma/fma84050
T70 21914-21919 Body_part denotes liver http://purl.org/sig/ont/fma/fma7197
T71 22491-22495 Body_part denotes Face http://purl.org/sig/ont/fma/fma24728
T72 22669-22673 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712
T73 22943-22947 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 6266-6271 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T2 7995-8000 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T3 8736-8741 Body_part denotes organ http://purl.obolibrary.org/obo/UBERON_0000062
T4 10652-10656 Body_part denotes tail http://purl.obolibrary.org/obo/UBERON_0002415
T5 11871-11877 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T6 11894-11899 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T7 11915-11920 Body_part denotes urine http://purl.obolibrary.org/obo/UBERON_0001088
T8 11924-11929 Body_part denotes stool http://purl.obolibrary.org/obo/UBERON_0001988
T9 12115-12121 Body_part denotes saliva http://purl.obolibrary.org/obo/UBERON_0001836
T10 12199-12205 Body_part denotes saliva http://purl.obolibrary.org/obo/UBERON_0001836
T11 12987-12992 Body_part denotes stool http://purl.obolibrary.org/obo/UBERON_0001988
T12 13103-13107 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T13 18895-18899 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398
T14 19770-19774 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T15 19808-19812 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T16 19976-19980 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T17 19995-19999 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T18 21914-21919 Body_part denotes liver http://purl.obolibrary.org/obo/UBERON_0002107
T19 22491-22495 Body_part denotes Face http://purl.obolibrary.org/obo/UBERON_0001456
T20 22669-22673 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398
T21 22943-22947 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398

LitCovid_AGAC

Id Subject Object Predicate Lexical cue
p66677s11 19762-19769 NegReg denotes reduced
p66678s14 19948-19955 NegReg denotes reduced

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 556-565 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T2 654-664 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T3 838-853 Disease denotes virus infection http://purl.obolibrary.org/obo/MONDO_0005108
T4 844-853 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T5 917-950 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T6 952-956 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T7 1025-1029 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T8 1242-1246 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T9 1308-1316 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T10 1543-1547 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T11 1584-1588 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T12 1635-1639 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T13 3260-3264 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T14 3304-3308 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T15 5054-5063 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T16 5770-5779 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T17 6556-6560 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T18 7129-7133 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T19 7409-7428 Disease denotes 2019‐nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T20 7419-7428 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T21 7768-7803 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T22 7774-7803 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T23 7805-7809 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T24 7936-7947 Disease denotes lymphopenia http://purl.obolibrary.org/obo/MONDO_0003783
T25 8177-8196 Disease denotes 2019‐nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T26 8187-8196 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T27 8616-8625 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T28 8676-8680 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T29 8727-8749 Disease denotes multiple organ failure http://purl.obolibrary.org/obo/MONDO_0043726
T30 8816-8825 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T31 9479-9515 Disease denotes hypertension, cardiovascular disease http://purl.obolibrary.org/obo/MONDO_0001302
T32 9479-9491 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T33 9493-9515 Disease denotes cardiovascular disease http://purl.obolibrary.org/obo/MONDO_0004995
T34 9520-9528 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T35 9659-9679 Disease denotes 2019‐nCoV infections http://purl.obolibrary.org/obo/MONDO_0100096
T36 10200-10209 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T37 11071-11081 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T38 11507-11516 Disease denotes diarrhoea http://purl.obolibrary.org/obo/MONDO_0001673
T39 12969-12978 Disease denotes diarrhoea http://purl.obolibrary.org/obo/MONDO_0001673
T40 13805-13814 Disease denotes diarrhoea http://purl.obolibrary.org/obo/MONDO_0001673
T41 14921-14930 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T42 15580-15603 Disease denotes infections, respiratory http://purl.obolibrary.org/obo/MONDO_0024355
T43 15604-15614 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T44 15636-15646 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T45 16140-16150 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T46 16917-16926 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T47 16938-16953 Disease denotes viral pneumonia http://purl.obolibrary.org/obo/MONDO_0006012
T48 16944-16953 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T49 17116-17131 Disease denotes viral pneumonia http://purl.obolibrary.org/obo/MONDO_0006012
T50 17122-17131 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T51 17201-17210 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T52 17637-17641 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T53 17746-17750 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T54 17955-17959 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T55 18445-18454 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T56 19109-19116 Disease denotes malaria http://purl.obolibrary.org/obo/MONDO_0005136
T57 19365-19374 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T58 19676-19686 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T59 19706-19715 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T60 20757-20761 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T61 21050-21060 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T62 21112-21116 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T63 21168-21172 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T64 21454-21473 Disease denotes zoonotic infections http://purl.obolibrary.org/obo/MONDO_0025481
T65 21497-21507 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T66 21878-21888 Disease denotes rheumatism http://purl.obolibrary.org/obo/MONDO_0005554
T67 21914-21927 Disease denotes liver disease http://purl.obolibrary.org/obo/MONDO_0005154
T68 22300-22320 Disease denotes nosocomial infection http://purl.obolibrary.org/obo/MONDO_0043544
T69 22311-22320 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T70 22964-22986 Disease denotes respiratory infections http://purl.obolibrary.org/obo/MONDO_0024355
T71 22992-22996 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T72 23315-23324 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T73 23703-23719 Disease denotes viral infections http://purl.obolibrary.org/obo/MONDO_0005108

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 24-25 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T2 137-143 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T3 147-152 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T4 169-170 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 212-213 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T6 219-225 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T7 544-545 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 585-587 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T9 704-705 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 778-785 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T11 838-843 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T12 885-890 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T13 1000-1001 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T14 1007-1013 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T15 1067-1068 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T16 1069-1072 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T17 1145-1150 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T18 1299-1306 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Viruses
T19 1389-1390 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 1472-1473 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21 1604-1605 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T22 1640-1645 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T23 1716-1721 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T24 1812-1813 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T25 1926-1931 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Virus
T26 1971-1972 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T27 1998-1999 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T28 2107-2108 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T29 2217-2220 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T30 2393-2398 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T31 2412-2417 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T32 2418-2424 http://purl.obolibrary.org/obo/UBERON_0001005 denotes airway
T33 2425-2435 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T34 2436-2441 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T35 2675-2680 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T36 2712-2717 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T37 2723-2726 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T38 2748-2749 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T39 2767-2772 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T40 2811-2812 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T41 2852-2858 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T42 2871-2877 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T43 2988-2993 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T44 3026-3030 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T45 3180-3181 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T46 3309-3314 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T47 3387-3391 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T48 3464-3468 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T49 3539-3543 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T50 3617-3623 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T51 3649-3654 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T52 4121-4127 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T53 4141-4143 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T54 4198-4205 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T55 4269-4274 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T56 4275-4281 http://purl.obolibrary.org/obo/UBERON_0001005 denotes airway
T57 4282-4292 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T58 4293-4298 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T59 4330-4335 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T60 4340-4341 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T61 4457-4460 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T62 4497-4498 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T63 4598-4599 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T64 4683-4687 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T65 4725-4729 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T66 4752-4753 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T67 4807-4812 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T68 4951-4952 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T69 4986-4993 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T70 5334-5335 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T71 5352-5356 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T72 5385-5386 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T73 5423-5427 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T74 5438-5439 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T75 5464-5469 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T76 5886-5887 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T77 5901-5904 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T78 5961-5962 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T79 5963-5968 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T80 6019-6028 http://purl.obolibrary.org/obo/CLO_0009524 denotes Vero cell
T81 6066-6071 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T82 6081-6086 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T83 6201-6202 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T84 6203-6208 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T85 6224-6228 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T86 6290-6300 http://purl.obolibrary.org/obo/CLO_0054283 denotes HeLa cells
T87 6290-6300 http://purl.obolibrary.org/obo/CLO_0054285 denotes HeLa cells
T88 6290-6300 http://purl.obolibrary.org/obo/CLO_0054286 denotes HeLa cells
T89 6290-6300 http://purl.obolibrary.org/obo/CLO_0054287 denotes HeLa cells
T90 6290-6300 http://purl.obolibrary.org/obo/CLO_0054288 denotes HeLa cells
T91 6290-6300 http://purl.obolibrary.org/obo/CLO_0054289 denotes HeLa cells
T92 6290-6294 http://purl.obolibrary.org/obo/CLO_0003684 denotes HeLa
T93 6290-6294 http://purl.obolibrary.org/obo/CLO_0050910 denotes HeLa
T94 6356-6365 http://purl.obolibrary.org/obo/CLO_0000031 denotes cell line
T95 6421-6426 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T96 6428-6431 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T97 6454-6459 http://purl.obolibrary.org/obo/CLO_0007836 denotes mouse
T98 6528-6534 http://purl.obolibrary.org/obo/CLO_0001020 denotes a cell
T99 6627-6629 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T100 7134-7139 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T101 7155-7158 http://purl.obolibrary.org/obo/CLO_0001007 denotes 380
T102 7296-7303 http://purl.obolibrary.org/obo/CLO_0009985 denotes focused
T103 7320-7322 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T104 7511-7516 http://purl.obolibrary.org/obo/UBERON_0003101 denotes males
T105 7511-7516 http://www.ebi.ac.uk/efo/EFO_0000970 denotes males
T106 7949-7950 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T107 7995-8000 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T108 7995-8000 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T109 8015-8016 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T110 8035-8036 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T111 8363-8367 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T112 8363-8367 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T113 8700-8702 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T114 8736-8741 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organ
T115 8754-8755 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T116 9346-9351 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T117 9405-9406 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T118 9545-9547 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T119 9789-9790 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T120 10007-10008 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T121 10041-10043 http://purl.obolibrary.org/obo/CLO_0001022 denotes Li
T122 10041-10043 http://purl.obolibrary.org/obo/CLO_0007314 denotes Li
T123 10099-10104 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T124 10224-10226 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T125 10235-10237 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T126 10331-10335 http://purl.obolibrary.org/obo/UBERON_0003101 denotes Male
T127 10331-10335 http://www.ebi.ac.uk/efo/EFO_0000970 denotes Male
T128 10597-10598 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T129 10645-10646 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T130 10652-10656 http://purl.obolibrary.org/obo/UBERON_0002415 denotes tail
T131 10759-10760 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T132 10815-10816 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T133 10926-10927 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T134 10980-10981 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T135 11111-11112 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T136 11121-11122 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T137 11607-11608 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T138 11774-11779 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T139 11783-11788 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T140 11789-11794 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T141 11813-11818 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T142 11885-11886 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T143 11997-12002 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T144 12081-12086 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T145 12123-12125 http://purl.obolibrary.org/obo/CLO_0009287 denotes Te
T146 12302-12304 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T147 12446-12447 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T148 12607-12609 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T149 12875-12876 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T150 13004-13009 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T151 13074-13075 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T152 13076-13079 http://purl.obolibrary.org/obo/UBERON_0001007 denotes gut
T153 13076-13079 http://purl.obolibrary.org/obo/UBERON_0001555 denotes gut
T154 13076-13079 http://www.ebi.ac.uk/efo/EFO_0000834 denotes gut
T155 13103-13107 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T156 13103-13107 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T157 13175-13176 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T158 13446-13449 http://purl.obolibrary.org/obo/UBERON_0001007 denotes gut
T159 13446-13449 http://purl.obolibrary.org/obo/UBERON_0001555 denotes gut
T160 13446-13449 http://www.ebi.ac.uk/efo/EFO_0000834 denotes gut
T161 13625-13631 http://purl.obolibrary.org/obo/UBERON_0001005 denotes airway
T162 14329-14330 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T163 15273-15276 http://purl.obolibrary.org/obo/CLO_0050236 denotes lag
T164 16025-16028 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T165 16069-16074 http://purl.obolibrary.org/obo/CLO_0009985 denotes focus
T166 16794-16795 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T167 16964-16970 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T168 17266-17269 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T169 17286-17287 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T170 17296-17299 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T171 17320-17321 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T172 17484-17494 http://purl.obolibrary.org/obo/PR_000001898 denotes call for a
T173 17531-17532 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T174 17698-17700 http://purl.obolibrary.org/obo/CLO_0001022 denotes Li
T175 17698-17700 http://purl.obolibrary.org/obo/CLO_0007314 denotes Li
T176 17755-17756 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T177 17788-17791 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T178 17804-17810 http://purl.obolibrary.org/obo/NCBITaxon_9837 denotes camels
T179 18103-18104 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T180 18275-18276 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T181 18363-18367 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T182 18456-18460 http://purl.obolibrary.org/obo/UBERON_0000473 denotes Test
T183 18660-18665 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T184 18715-18721 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T185 18770-18771 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T186 18861-18866 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T187 18882-18887 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T188 18959-18964 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T189 19400-19408 http://purl.obolibrary.org/obo/GO_0005764 denotes lysosome
T190 19409-19418 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membranes
T191 19527-19528 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T192 19536-19544 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T193 19650-19654 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T194 19670-19675 http://purl.obolibrary.org/obo/CLO_0007836 denotes mouse
T195 19695-19700 http://purl.obolibrary.org/obo/CLO_0007836 denotes mouse
T196 19770-19774 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T197 19770-19774 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T198 19808-19812 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T199 19808-19812 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T200 19902-19907 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T201 19926-19933 http://purl.obolibrary.org/obo/NCBITaxon_9479 denotes monkeys
T202 19976-19980 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T203 19976-19980 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T204 19995-19999 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T205 19995-19999 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T206 20084-20091 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T207 20172-20173 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T208 20215-20222 http://purl.obolibrary.org/obo/NCBITaxon_9479 denotes monkeys
T209 20294-20301 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T210 20843-20844 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T211 20955-20956 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T212 21251-21252 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T213 21372-21379 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T214 21385-21391 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T215 21654-21661 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T216 21662-21665 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T217 21666-21667 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T218 21702-21703 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T219 21914-21919 http://purl.obolibrary.org/obo/UBERON_0002107 denotes liver
T220 21914-21919 http://www.ebi.ac.uk/efo/EFO_0000887 denotes liver
T221 21954-21956 http://purl.obolibrary.org/obo/CLO_0001022 denotes Li
T222 21954-21956 http://purl.obolibrary.org/obo/CLO_0007314 denotes Li
T223 21961-21963 http://purl.obolibrary.org/obo/CLO_0001022 denotes Li
T224 21961-21963 http://purl.obolibrary.org/obo/CLO_0007314 denotes Li
T225 22016-22023 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T226 22024-22027 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T227 22035-22036 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T228 22387-22388 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T229 22491-22495 http://purl.obolibrary.org/obo/UBERON_0001456 denotes Face
T230 23418-23421 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T231 23465-23466 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T232 23524-23525 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T233 23533-23537 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T234 23630-23631 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T235 23773-23777 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T236 23904-23907 http://purl.obolibrary.org/obo/CLO_0001755 denotes ask

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 2443-2445 Chemical denotes Lu http://purl.obolibrary.org/obo/CHEBI_33382
T2 2530-2541 Chemical denotes nucleotides http://purl.obolibrary.org/obo/CHEBI_36976
T3 2569-2579 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T4 3241-3246 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T5 4393-4398 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T6 4436-4441 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T7 4775-4782 Chemical denotes Protein http://purl.obolibrary.org/obo/CHEBI_16541
T8 4813-4824 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433
T9 4843-4845 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T10 4853-4860 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T11 5696-5703 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T12 6410-6417 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T13 6517-6524 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T14 7049-7054 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T15 7159-7169 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T16 7159-7164 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T17 7165-7169 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T18 7208-7216 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T19 8363-8367 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T20 10041-10043 Chemical denotes Li http://purl.obolibrary.org/obo/CHEBI_30145
T21 12123-12125 Chemical denotes Te http://purl.obolibrary.org/obo/CHEBI_30452
T22 17083-17089 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T23 17159-17166 Chemical denotes arbidol http://purl.obolibrary.org/obo/CHEBI_134730
T24 17369-17376 Chemical denotes arbidol http://purl.obolibrary.org/obo/CHEBI_134730
T25 17513-17517 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T26 17574-17579 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T27 17698-17700 Chemical denotes Li http://purl.obolibrary.org/obo/CHEBI_30145
T28 17884-17892 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T29 17929-17938 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T30 18131-18140 Chemical denotes lopinavir http://purl.obolibrary.org/obo/CHEBI_31781
T31 18171-18180 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222
T32 18182-18191 Chemical denotes ritonavir http://purl.obolibrary.org/obo/CHEBI_45409
T33 18193-18218 Chemical denotes cytochrome P450 inhibitor http://purl.obolibrary.org/obo/CHEBI_50183
T34 18193-18208 Chemical denotes cytochrome P450 http://purl.obolibrary.org/obo/CHEBI_38559
T35 18193-18203 Chemical denotes cytochrome http://purl.obolibrary.org/obo/CHEBI_4056
T36 18209-18218 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222
T37 18247-18256 Chemical denotes lopinavir http://purl.obolibrary.org/obo/CHEBI_31781
T38 18262-18272 Chemical denotes interferon http://purl.obolibrary.org/obo/CHEBI_52999
T39 18461-18466 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T40 18478-18487 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T41 18488-18498 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T42 18518-18537 Chemical denotes protease inhibitors http://purl.obolibrary.org/obo/CHEBI_37670|http://purl.obolibrary.org/obo/CHEBI_60258
T44 18527-18537 Chemical denotes inhibitors http://purl.obolibrary.org/obo/CHEBI_35222
T45 18568-18576 Chemical denotes medicine http://purl.obolibrary.org/obo/CHEBI_23888
T46 19067-19077 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T47 19085-19095 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T48 19126-19137 Chemical denotes chloroquine http://purl.obolibrary.org/obo/CHEBI_3638
T49 19309-19320 Chemical denotes chloroquine http://purl.obolibrary.org/obo/CHEBI_3638
T50 19494-19504 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T51 19512-19522 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T52 19579-19597 Chemical denotes protease inhibitor http://purl.obolibrary.org/obo/CHEBI_37670|http://purl.obolibrary.org/obo/CHEBI_60258
T54 19588-19597 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222
T55 19598-19607 Chemical denotes lopinavir http://purl.obolibrary.org/obo/CHEBI_31781
T56 19622-19631 Chemical denotes ritonavir http://purl.obolibrary.org/obo/CHEBI_45409
T57 19722-19732 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T58 19860-19870 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T59 20130-20140 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T60 20330-20340 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T61 20780-20784 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T62 21718-21726 Chemical denotes medicine http://purl.obolibrary.org/obo/CHEBI_23888
T63 21789-21797 Chemical denotes medicine http://purl.obolibrary.org/obo/CHEBI_23888
T64 21954-21956 Chemical denotes Li http://purl.obolibrary.org/obo/CHEBI_30145
T65 21961-21963 Chemical denotes Li http://purl.obolibrary.org/obo/CHEBI_30145

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 4350-4364 http://purl.obolibrary.org/obo/GO_0003341 denotes cilium beating
T2 7739-7748 http://purl.obolibrary.org/obo/GO_0007585 denotes breathing
T3 10988-11000 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction
T4 13080-13087 http://purl.obolibrary.org/obo/GO_0009606 denotes tropism
T5 13108-13115 http://purl.obolibrary.org/obo/GO_0009606 denotes tropism
T6 14384-14390 http://purl.obolibrary.org/obo/GO_0060361 denotes flight
T7 18160-18180 http://purl.obolibrary.org/obo/GO_0004866 denotes proteinase inhibitor
T8 18160-18170 http://purl.obolibrary.org/obo/GO_0004175 denotes proteinase
T9 18193-18203 http://purl.obolibrary.org/obo/GO_0045158 denotes cytochrome
T10 18193-18203 http://purl.obolibrary.org/obo/GO_0045157 denotes cytochrome
T11 18193-18203 http://purl.obolibrary.org/obo/GO_0045156 denotes cytochrome
T12 18193-18203 http://purl.obolibrary.org/obo/GO_0008121 denotes cytochrome
T13 19259-19272 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T14 23703-23719 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infections

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-55 Sentence denotes The Novel Coronavirus – A Snapshot of Current Knowledge
T2 56-99 Sentence denotes The Novel Coronavirus from China­early data
T3 100-102 Sentence denotes H.
T4 103-110 Sentence denotes Brüssow
T5 112-120 Sentence denotes Abstract
T6 121-128 Sentence denotes Summary
T7 129-326 Sentence denotes Another animal to human transmission of a coronavirus occurred in December 2019 on a live animal market in the Chinese city of Wuhan causing an epidemic in China, reaching now different continents.
T8 327-489 Sentence denotes This minireview summarizes the research literature on the virological, clinical and epidemiological aspects of this epidemic published until end of February 2020.
T9 491-649 Sentence denotes In late December 2019, Chinese physicians identified a series of pneumonia cases in Wuhan, an 11‐million inhabitant megacity and traffic hub in central China.
T10 650-1021 Sentence denotes The infections were epidemiologically associated with a seafood ‘wet’ market in the city. ‘Wet’ market means that live and dead animals are sold, raising the suspicion of another zoonotic virus infection that had spilled over into the human population similar to the severe acute respiratory syndrome (SARS) epidemic in 2002, which also started from a live animal market.
T11 1022-1128 Sentence denotes In SARS, the viral source was traced back to a bat coronavirus with civets as potential intermediate host.
T12 1129-1403 Sentence denotes The novel Wuhan virus figures under different names (2019‐nCoV for novel coronavirus in the research literature, SARS‐CoV‐2 by the International Committee on Taxonomy of Viruses, COVID‐19 as disease denominator by WHO), all names indicating that it represents a coronavirus.
T13 1404-1702 Sentence denotes One might argue whether ‘new’ instead of ‘novel’ coronavirus is not a better term since it is not completely different, but related to the SARS coronavirus, while others find that SARS‐CoV‐2 suggests a too close relations with the SARS virus possibly leading to some confusion (Jiang et al., 2020).
T14 1703-1924 Sentence denotes As the Wuhan virus name changed, so changed the character of the epidemic and this overview can only provide a snapshot of the scientific research literature on this topic at the moment of this writing (29 February 2020).
T15 1926-1963 Sentence denotes Virus isolation and genome sequencing
T16 1964-2106 Sentence denotes Within a record time of less than a month, the novel coronavirus was identified, isolated and sequenced by three groups of Chinese scientists.
T17 2107-2143 Sentence denotes A large consortium coordinated by W.
T18 2144-2460 Sentence denotes Tan from the Chinese Centers for Disease Control and Prevention (Chinese CDC) obtained eight complete viral genome sequences from nine patients either by direct RNA isolation and sequencing from bronchoalveolar lavage fluid (BALF) or from classical virus isolation on human airway epithelial cells (Lu et al., 2020).
T19 2461-2613 Sentence denotes The eight genomes showed sequence identity of 99.98%, i.e. only four nucleotides differed out of the 30 000 nucleotide‐long single‐stranded RNA genomes.
T20 2614-2784 Sentence denotes This level of viral genomic identity isolated from different human subjects is unusual for an RNA virus that has been circulating for a long time in the human population.
T21 2785-2878 Sentence denotes This observation suggests a recent single spill‐over event from an animal source into humans.
T22 2879-2954 Sentence denotes Geneticists estimated that this event might have occurred in November 2019.
T23 2955-3116 Sentence denotes The closest relatives of the new virus are coronaviruses isolated from bats in Eastern China, but they shared only 87.6% sequence identity with the new isolates.
T24 3117-3294 Sentence denotes Therefore, viral taxonomists consider the novel coronavirus as a new viral species belonging to clade 2 of the Sarbecovirus group, acronym for SARS comprising betacoronaviruses.
T25 3295-3380 Sentence denotes With the SARS virus, the new isolates shared even less, namely 79% sequence identity.
T26 3381-3688 Sentence denotes While bats are still considered the most likely source for this novel coronavirus, bats were already hibernating at the time of onset of this epidemic and no bats were sold at the Huanan food market in Wuhan, suggesting an intermediate animal host where adaptation to human transmission might have occurred.
T27 3689-3768 Sentence denotes Live hedgehogs, badgers, snakes and turtledoves were sold at the Huanan market.
T28 3769-3922 Sentence denotes Claims were made, but were not (yet) substantiated that snakes or pangolins were intermediate hosts for creating the coronavirus by recombination events.
T29 3923-3925 Sentence denotes W.
T30 3926-4191 Sentence denotes Tan and colleagues, who now constitute the China Novel Coronavirus Investigating and Research Team, described subsequently the isolation of further coronaviruses from three patients in Wuhan who tested negative for 18 viral and four bacterial respiratory pathogens.
T31 4192-4265 Sentence denotes These viruses were closely related to those of the earlier nine patients.
T32 4266-4384 Sentence denotes In human airway epithelial cells, the cytopathic effect of this virus was a lack of cilium beating (Zhu et al., 2020).
T33 4385-4411 Sentence denotes Another group led by Y.‐Z.
T34 4412-4666 Sentence denotes Zhang from the zoonosis group of the Chinese CDC in Beijing determined the genome of a closely related coronavirus by deep meta‐transcriptomic sequencing of the bronchoalveolar fluid of a patient working at the seafood market of Wuhan (Wu et al., 2020c).
T35 4667-4774 Sentence denotes Analysis of the cell receptor interacting viral S (spike) gene showed indications of a recombination event.
T36 4775-4873 Sentence denotes Protein modelling suggested the human angiotensin‐converting enzyme II (ACE2) protein as receptor.
T37 4874-4879 Sentence denotes Z.‐L.
T38 4880-5064 Sentence denotes Shi from the Wuhan Institute of Virology, and collaborators, presented a detailed characterization of the viruses detected in seven patients from Wuhan suffering from severe pneumonia.
T39 5065-5155 Sentence denotes Six of them were professionally associated with the local food market (Zhou et al., 2020).
T40 5156-5302 Sentence denotes Metagenomics of BALF yielded coronaviruses that shared 99.9% sequence identity between the patients and the other coronavirus isolates from Wuhan.
T41 5303-5528 Sentence denotes Using primers corresponding to a region in the S gene, these scientists developed a sensitive and outbreak‐specific PCR test providing a diagnostic tool for the virus detection in BALF or alternatively oral swabs of patients.
T42 5529-5704 Sentence denotes For one patient, the researchers demonstrated an IgM seroconversion followed by an IgG seroconversion when using ELISA technique with the viral nucleocapsid as target antigen.
T43 5705-5780 Sentence denotes Three patients showed specific IgM responses indicating an acute infection.
T44 5781-5928 Sentence denotes This serological evidence is important since the full set of Koch’s postulates for the identification of a new pathogen has not yet been fulfilled.
T45 5929-6061 Sentence denotes From one patient, they isolated a virus that caused cytopathic effects on the established Vero cell line after 3 days of incubation.
T46 6062-6229 Sentence denotes The virus‐infected cells were stained with specific antibodies and were observed by fluorescence microscopy, allowing the establishment of a virus neutralization test.
T47 6230-6283 Sentence denotes All patients developed neutralizing serum antibodies.
T48 6284-6596 Sentence denotes While HeLa cells could not be infected with the novel coronavirus, this cell line became susceptible when expressing the ACE2 protein of human, bat and civet (but not of mouse) origin indicating that this novel coronavirus uses this protein as a cell receptor, as did the SARS coronavirus from the 2002 epidemic.
T49 6597-6782 Sentence denotes Zhang et al. (2020a) compared 27 novel coronavirus genomes isolated from patients in three Chinese cities (Wuhan, Zhejiang and Guangdong) and Thailand, all of whom had contact to Wuhan.
T50 6783-6950 Sentence denotes The genomes were very similar but could still be classified into six genogroups, suggesting that mutations had accumulated within patients during the current outbreak.
T51 6951-7040 Sentence denotes Curiously, the most basal genogroups were detected in Guangdong, and not Wuhan, isolates.
T52 7041-7262 Sentence denotes Another group did an in‐depth annotation of the genomes of the novel coronaviruses with SARS virus and identified 380 amino acid substitutions affecting all predicted proteins of the viral genome (Wu, Peng et al., 2020b).
T53 7264-7285 Sentence denotes Clinical observations
T54 7286-7449 Sentence denotes One study focused on the cases of 41 patients hospitalized in Wuhan before January 2, all of whom had laboratory‐confirmed 2019‐nCoV infection (Huanget al., 2020).
T55 7450-7619 Sentence denotes At this earliest phase of the outbreak, patients were mostly males (73%), half of whom had underlying diseases and 66% of whom were exposed to the Huanan seafood market.
T56 7620-7706 Sentence denotes Common presenting symptoms were fever (98%), cough (76%) and myalgia or fatigue (44%).
T57 7707-7915 Sentence denotes Dyspnoea (laboured or difficult breathing) developed in 55%; acute respiratory distress syndrome (ARDS) was seen in 29%; 32% of patients needed to be transferred to an intensive care unit (ICU); and 15% died.
T58 7916-8034 Sentence denotes The patients showed lymphopenia (a reduction of lymphocytes in the circulating blood) and signs of a ‘cytokine storm’.
T59 8035-8142 Sentence denotes A follow‐up study investigated 99 patients at Jinyintan Hospital in Wuhan between January 1 and January 20.
T60 8143-8217 Sentence denotes All 99 patients had PCR‐confirmed 2019‐nCoV infection (Chen et al., 2020).
T61 8218-8374 Sentence denotes During this next phase of the epidemic, fewer patients had had an exposure to the Huanan seafood market (49%), but they were still predominantly male (67%).
T62 8375-8460 Sentence denotes The average age was 55 years, and again, half of them suffered from chronic diseases.
T63 8461-8579 Sentence denotes The predominant clinical manifestations in these patients were fever (83%), cough (82%) and shortness of breath (31%).
T64 8580-8646 Sentence denotes Imaging techniques showed bilateral pneumonia in 75% of the cases.
T65 8647-8750 Sentence denotes Seventeen per cent developed ARDS, which worsened in 11%, leading to death from multiple organ failure.
T66 8751-8916 Sentence denotes In a third report, 138 patients with confirmed novel coronavirus infection were admitted between January 1 and 28 at Zhongnan Hospital of Wuhan (Wang et al., 2020c).
T67 8917-8982 Sentence denotes This report differed from the previous two in important respects.
T68 8983-9135 Sentence denotes In this cohort, only 9% of the patients reported having had an exposure to the Huanan seafood market, and the gender ratio was not significantly biased.
T69 9136-9256 Sentence denotes The presenting symptoms were fever (99%), fatigue (70%) and dry cough (59%), followed by anorexia, myalgia and dyspnoea.
T70 9257-9368 Sentence denotes Bilateral shadows, or ground glass opacities, were revealed by imaging techniques in the lungs of all patients.
T71 9369-9435 Sentence denotes Overall, 26% of the patients needed a transfer to ICU and 4% died.
T72 9436-9530 Sentence denotes Half of the patients showed comorbidities (hypertension, cardiovascular disease and diabetes).
T73 9531-9621 Sentence denotes Most notably, 41% were possibly infected in the hospital, including 40 healthcare workers.
T74 9622-9772 Sentence denotes Until February 9, only nine cases of 2019‐nCoV infections were reported in infants under 1 year in China, all of whom had had infected family members.
T75 9773-9831 Sentence denotes All infants had a mild form of disease (Wei et al., 2020).
T76 9833-9845 Sentence denotes Epidemiology
T77 9846-9947 Sentence denotes For planning public health measures, basic transmission data for the novel coronavirus are essential.
T78 9948-10164 Sentence denotes The first 425 confirmed cases from Wuhan provided data for a first epidemiological analysis (Li et al., 2020a), but it should be kept in mind that the virus might evolve during the epidemic and change its properties.
T79 10165-10330 Sentence denotes Over the three early phases of the infection (< Jan1, Jan1‐11, Jan 12‐22), no change in average age was seen (56–61 years); no cases < 15 years of age were observed.
T80 10331-10452 Sentence denotes Male dominance among the patients disappeared, and the degree of ‘wet’ market exposure in the patients dropped over time.
T81 10453-10568 Sentence denotes In addition, patient contact with persons showing respiratory symptoms was reported in fewer than 30% of the cases.
T82 10569-10674 Sentence denotes These scientists calculated a mean incubation period of 5.2 days displaying a long tail (95th percentile:
T83 10675-10686 Sentence denotes 12.5 days).
T84 10687-10789 Sentence denotes Comparisons of index cases and secondary cases in five clusters yielded a ‘serial interval’ of 7 days.
T85 10790-10899 Sentence denotes From onset of illness to a medical visit, and then to hospital admission, 5 and 12 days elapsed respectively.
T86 10900-10952 Sentence denotes The Wuhan epidemic showed a doubling time of 7 days.
T87 10953-11082 Sentence denotes From the cluster analysis, a basic reproduction number of 2.2 was estimated, i.e. each case led on average to 2.2 new infections.
T88 11083-11192 Sentence denotes Another report investigated a case of a family from Shenzhen visiting relatives in Wuhan (Chan et al., 2020).
T89 11193-11313 Sentence denotes One Wuhan relative had developed fever, cough and dyspnoea four days before the arrival of family members from Shenzhen.
T90 11314-11404 Sentence denotes Four further relatives developed respiratory symptoms which led to hospitalization in two.
T91 11405-11597 Sentence denotes From the six Shenzhen family visitors, the four adults developed symptoms (fever, cough, weakness and diarrhoea) during the 5 days of their Wuhan visit, while two children remained unaffected.
T92 11598-11737 Sentence denotes Notably, a family member who remained in Shenzhen contracted the disease four days after the return of the visitors from Wuhan to Shenzhen.
T93 11738-11808 Sentence denotes The data are evidence for efficient human‐to‐human virus transmission.
T94 11809-11960 Sentence denotes The virus was detected in most nasopharyngeal and half of the throat swabs, a single serum sample, but no urine or stool sample of this family cluster.
T95 11961-12140 Sentence denotes Of importance for easy sampling and virus diagnostics, 90% of hospitalized patients from Hongkong were positive for PCR virus detection in self‐collected saliva (Te et al., 2020).
T96 12141-12332 Sentence denotes The viral load ranged from 103 to 108 viral copies per ml saliva and decreased over the duration of hospitalization, but in one patient, it was still detectable 11 days after hospitalization.
T97 12333-12501 Sentence denotes Another study extended the epidemiological analysis to 88 infected patients living outside of Wuhan, but who had a recent travel history to Wuhan (Backer et al., 2020).
T98 12502-12578 Sentence denotes This cohort allowed an estimation of the mean incubation period to 6.4 days.
T99 12579-12687 Sentence denotes Upper estimates range up to 11 days, which is important to determine the appropriate duration of quarantine.
T100 12689-12695 Sentence denotes Spread
T101 12696-12739 Sentence denotes The novel coronavirus is spreading rapidly.
T102 12740-12825 Sentence denotes On January 19, the first patient was reported on the West Coast of the United States.
T103 12826-12922 Sentence denotes The patient developed respiratory symptoms after a family visit to Wuhan (Holshue et al., 2020).
T104 12923-13019 Sentence denotes During hospitalization, the patient developed diarrhoea and the stool was weakly virus‐positive.
T105 13020-13145 Sentence denotes This observation is important since it could indicate a gut tropism in addition to lung tropism, not unusual for coronavirus.
T106 13146-13336 Sentence denotes One might therefore count on a changing symptomatology in the unfolding of the current epidemic, necessitating public health measures against faecal–oral transmission (Danchin et al., 2020).
T107 13337-13483 Sentence denotes This scenario is not unlikely, since the ACE2 host receptor for the novel coronavirus is highly expressed on gut enterocytes (Liang et al., 2020).
T108 13484-13569 Sentence denotes Some change in symptomatology was already seen for Chinese patients outside of Wuhan.
T109 13570-13690 Sentence denotes Among the first 2019‐nCoV patients from Beijing, upper airway congestion was the dominant finding (Chang et al., 2020a).
T110 13691-13866 Sentence denotes Disease in 62 laboratory‐confirmed patients from Zhejiang province showed mostly mild to moderate disease; 9% had diarrhoea, and only one patient needed ICU (Xu et al., 2020).
T111 13867-13955 Sentence denotes When analysing 72 314 cases, an overall case fatality rate (CFR) of 2.3% was calculated.
T112 13956-14226 Sentence denotes However, when the analysis was limited to cases outside of the Hubei province (where Wuhan is located), the CFR was only 0.4% (Wu and McGoogan, 2020), possibly suggesting change of the epidemic to milder diseases with larger chains of transmission (Vetter et al., 2020).
T113 14227-14405 Sentence denotes On January 24, two citizens of Germany developed symptoms and became 2019‐nCoV‐positive after meeting a Chinese business partner, who only became ill on the flight back to China.
T114 14406-14541 Sentence denotes Two further subjects developed symptoms who had contact with one of the infected Germans notably before this person developed symptoms.
T115 14542-14661 Sentence denotes This report suggests that infected persons can infect contact persons during the incubation period (Rothe et al, 2020).
T116 14662-14952 Sentence denotes Wu and Leung (2020a) estimated the national and global spread of the novel coronavirus on the basis of the air and train traffic data from and to Wuhan, accounting for the strict metropolitan‐wide quarantine measure imposed on Wuhan on January 24 by using an infection metapopulation model.
T117 14953-15148 Sentence denotes According to this calculation, sufficient numbers of infected subjects had already been exported to major Chinese cities (900 infected subjects to five cities) to start secondary local epidemics.
T118 15149-15290 Sentence denotes The peak of the Wuhan epidemic was predicted for April 2020 and that of local epidemics peaks in other Chinese cities would lag by 1–2 weeks.
T119 15291-15496 Sentence denotes If transmissibility could be reduced by 25% through restrictions of people’s mobility, then the magnitude of the epidemic could be reduced by 50% and the peak of the epidemic would be delayed by one month.
T120 15497-15689 Sentence denotes One major unknown factor of this model is the seasonality of the novel coronavirus infections, respiratory infections being typical winter infections declining with the warming of the seasons.
T121 15690-15887 Sentence denotes Research, available only as preprint (Lai et al., 2020), estimated that more than 800 infected subjects from Wuhan travelled to international destinations, with Thailand and Japan leading the list.
T122 15888-16011 Sentence denotes Public health measures must therefore also be taken in these countries to contain the international spread of the epidemic.
T123 16012-16093 Sentence denotes The epidemic has also reached Europe with an unexplained focus in Northern Italy.
T124 16094-16353 Sentence denotes Particularly, worrisome will be the spread of infections to African countries where many regions have close economic connections with China, but insufficient hospital and public health resources to assure efficient containment measures (Gilbert et al., 2020).
T125 16354-16483 Sentence denotes Risk of transmission to Africa and South America is, however, by some epidemiologists considered to be low (Haider et al., 2020).
T126 16484-16593 Sentence denotes It is currently unclear whether transmission will be muted in agro‐economies with lower population densities.
T127 16595-16604 Sentence denotes Treatment
T128 16605-16765 Sentence denotes So far, Chinese physicians have developed an empirical treatment and triage algorithm based on their experience with patients from Wuhan (Zhang, et al., 2020b).
T129 16766-16927 Sentence denotes This triage scheme proposes a separation of patients into those receiving home treatment and those receiving treatments for regular community acquired pneumonia.
T130 16928-17111 Sentence denotes Suspected viral pneumonia cases are tested for the novel coronavirus under isolated observation; in case of dyspnoea and hypoxia development, supplemental oxygen supply will be given.
T131 17112-17221 Sentence denotes The viral pneumonia patients were treated with arbidol, approved in Russia and China for influenza treatment.
T132 17222-17352 Sentence denotes When the diagnosis of the novel coronavirus has been confirmed, a patient has been transferred to a specially designated hospital.
T133 17353-17462 Sentence denotes The efficacy of arbidol against coronavirus is not, however, well substantiated scientifically or clinically.
T134 17463-17530 Sentence denotes Emergency conditions call for a need for speed in drug development.
T135 17531-17722 Sentence denotes A promising approach is the repurposing of drugs tried against coronaviruses from previous outbreaks with SARS or Middle East Respiratory Syndrome (MERS) coronavirus (Li and De Clercq, 2020).
T136 17723-17859 Sentence denotes MERS, in contrast with SARS, is a coronavirus zoonosis of likely bat origin with camels as intermediate hosts that is still circulating.
T137 17860-18071 Sentence denotes The four non‐structural proteins that were preclinically explored as antiviral targets against SARS and MERS coronaviruses are reasonably well conserved in the novel coronavirus, raising hopes for this approach.
T138 18072-18304 Sentence denotes However, patient enrolment for a MERS treatment trial with lopinavir (an antiretroviral proteinase inhibitor)/ritonavir (cytochrome P450 inhibitor to prolong the half‐life of lopinavir) and interferon‐β1b (MIRACLE) is still ongoing.
T139 18305-18455 Sentence denotes Numerous clinical trials have been registered in China to test different compounds or combinations of compounds against the new coronavirus infection.
T140 18456-18630 Sentence denotes Test drugs range from antiviral nucleotide analogs over viral protease inhibitors to traditional Chinese herbal medicine (e.g. Forsythia derivative Lian qiao) (Maxmen, 2020).
T141 18631-18756 Sentence denotes It is important to start the tests now to get the informative patients enrolled and tested before the current epidemic stops.
T142 18757-18855 Sentence denotes WHO suggests a shared standard clinical protocol for these trials to make the outcomes comparable.
T143 18856-19016 Sentence denotes With virus neutralization tests now at hand, Chinese researchers have already done in vitro efficacity tests against the novel coronavirus (Wang et al., 2020a).
T144 19017-19138 Sentence denotes The most promising effects were observed with the nucleotide analog remdesivir and the anti‐malaria compound chloroquine.
T145 19139-19229 Sentence denotes Both showed inhibition of the novel coronavirus in the low micromolar concentration range.
T146 19230-19470 Sentence denotes Remdesivir acts on viral RNA transcription at the postviral entry level, while chloroquine needs to be applied at the beginning of the infection; chloroquine’s action on lysosome membranes might interfere with the viral entry–fusion events.
T147 19471-19687 Sentence denotes It is of note that the nucleotide analog remdesivir had a better activity against MERS coronavirus than the protease inhibitor lopinavir combined with ritonavir, and this both in cell culture and in mouse infections.
T148 19688-19846 Sentence denotes In the mouse MERS infection model remdesivir improved pulmonary function, reduced lung viral loads and decreased severe lung pathology (Sheahan et al., 2020).
T149 19847-20114 Sentence denotes In addition, remdesivir given prophylactically to MERS virus‐challenged rhesus monkeys significantly reduced viral titres in the lung and prevented lung pathology as assessed by histology or by X‐ray radiographs when compared to control animals (de Wit et al., 2020).
T150 20115-20223 Sentence denotes Treatment with remdesivir 12 h after viral challenge had a more limited protective effect in rhesus monkeys.
T151 20224-20363 Sentence denotes In early February, two randomized, placebo‐controlled clinical trials testing the therapeutic efficacy of remdesivir were started in China.
T152 20364-20561 Sentence denotes One trial will enrol 308 patients with mild or moderate novel coronavirus disease (ClinicalTrials.gov: NCT04252664) and the other 453 patients with severe disease (ClinicalTrials.gov: NCT04257656).
T153 20562-20645 Sentence denotes The enrolment is planned to be completed by end of April and May 2020 respectively.
T154 20646-20845 Sentence denotes The importance of evidence‐based treatments proven in controlled clinical trials must be stressed since in the SARS epidemic untested drug treatment seems to have done more harm than no treatment (A.
T155 20846-20879 Sentence denotes Danchin, personal communication).
T156 20880-21061 Sentence denotes Therapeutics directed against immunopathological host responses might have a treatment value in view of the ‘cytokine storm’ seen in some patients with novel coronavirus infections.
T157 21063-21085 Sentence denotes Prevention and control
T158 21086-21145 Sentence denotes Vaccines against MERS and SARS are currently not available.
T159 21146-21247 Sentence denotes As in the case of the SARS epidemic, the current epidemic must be fought with public health measures.
T160 21248-21338 Sentence denotes As a first measure, the Chinese authorities have closed the ‘wet’ seafood market in Wuhan.
T161 21339-21474 Sentence denotes Due to the close contact of live animals with humans, these markets offer ideal conditions for the transmission of zoonotic infections.
T162 21475-21602 Sentence denotes After two coronavirus infections having emerged from Chinese ‘wet’ food markets, strict hygiene measures are clearly warranted.
T163 21603-21692 Sentence denotes However, consuming meat and other products of wild animals has a long tradition in China.
T164 21693-21972 Sentence denotes There is a philosophy of medicine food homology, (‘eaten when hungry is food, eaten when ill is medicine’) such that in China pangolin products, for example are reputed to help against rheumatism; ‘meridian obstruction’; liver disease; and to improve eyesight (Li and Li, 2020b).
T165 21973-22059 Sentence denotes More recently, consumption of meat of wild animals has become a sign of social status.
T166 22060-22121 Sentence denotes It will not be easy to eradicate these false medical beliefs.
T167 22122-22257 Sentence denotes Interdiction might create black markets; therefore, some scientists recommend strictly controlling, instead of forbidding, this market.
T168 22258-22490 Sentence denotes Protecting the healthcare workers against nosocomial infection is another urgent need, since patient care will already represent a heavy burden to the health system and any reduction in health personnel would cause further problems.
T169 22491-22635 Sentence denotes Face masks are insufficient protection for them; N95 masks, goggles and protective gowns are needed for medical personnel (Chang et al., 2020b).
T170 22636-22795 Sentence denotes For the general public, frequent hand washing, cough and sneezing etiquette and wearing masks when visiting public places are recommended (Wang et al., 2020b).
T171 22796-22987 Sentence denotes However, scientific evidence is lacking for the effectiveness of wearing masks by the uninfected person in contrast to the proven effectiveness of hand washing against respiratory infections.
T172 22988-23106 Sentence denotes The SARS epidemic was contained by means of syndromic surveillance; isolation of patients; and quarantine of contacts.
T173 23107-23413 Sentence denotes These measures will also play an important role in the current epidemic which, due to its sheer size, will necessitate more draconian measures such as limiting the movement of persons to and from hotspots of infection, resulting in the lockdown of Wuhan and of particular small cities in Italy and Germany.
T174 23414-23491 Sentence denotes WHO has declared the novel coronavirus epidemic as a public health emergency.
T175 23492-23611 Sentence denotes This expanding epidemic will be a stress test for existing health systems, including those of industrialized countries.
T176 23612-23819 Sentence denotes It should also be a further motivation to strengthen fundamental research in trans‐species viral infections and on potential zoonosis impacts, particularly from bats, under changing environmental conditions.
T177 23820-24032 Sentence denotes From the viewpoint of citizens, when it comes to the protection of lives, one might ask whether one should not put the same spending on public health and preventive research as on the spending on defence budgets.
T178 24034-24054 Sentence denotes Conflict of interest
T179 24055-24069 Sentence denotes None declared.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 556-565 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T2 5054-5063 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T3 7652-7657 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T4 7665-7670 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T5 7681-7688 Phenotype denotes myalgia http://purl.obolibrary.org/obo/HP_0003326
T6 7692-7699 Phenotype denotes fatigue http://purl.obolibrary.org/obo/HP_0012378
T7 7707-7715 Phenotype denotes Dyspnoea http://purl.obolibrary.org/obo/HP_0002094
T8 7774-7794 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T9 7936-7947 Phenotype denotes lymphopenia http://purl.obolibrary.org/obo/HP_0001888
T10 8018-8032 Phenotype denotes cytokine storm http://purl.obolibrary.org/obo/HP_0033041
T11 8524-8529 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T12 8537-8542 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T13 8553-8572 Phenotype denotes shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T14 8616-8625 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T15 9165-9170 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T16 9178-9185 Phenotype denotes fatigue http://purl.obolibrary.org/obo/HP_0012378
T17 9196-9205 Phenotype denotes dry cough http://purl.obolibrary.org/obo/HP_0031246
T18 9225-9233 Phenotype denotes anorexia http://purl.obolibrary.org/obo/HP_0002039
T19 9235-9242 Phenotype denotes myalgia http://purl.obolibrary.org/obo/HP_0003326
T20 9247-9255 Phenotype denotes dyspnoea http://purl.obolibrary.org/obo/HP_0002094
T21 9479-9491 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T22 9493-9515 Phenotype denotes cardiovascular disease http://purl.obolibrary.org/obo/HP_0001626
T23 11226-11231 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T24 11233-11238 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T25 11243-11251 Phenotype denotes dyspnoea http://purl.obolibrary.org/obo/HP_0002094
T26 11480-11485 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T27 11487-11492 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T28 11507-11516 Phenotype denotes diarrhoea http://purl.obolibrary.org/obo/HP_0002014
T29 12969-12978 Phenotype denotes diarrhoea http://purl.obolibrary.org/obo/HP_0002014
T30 13805-13814 Phenotype denotes diarrhoea http://purl.obolibrary.org/obo/HP_0002014
T31 15592-15614 Phenotype denotes respiratory infections http://purl.obolibrary.org/obo/HP_0011947
T32 16917-16926 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T33 16944-16953 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T34 17036-17044 Phenotype denotes dyspnoea http://purl.obolibrary.org/obo/HP_0002094
T35 17049-17056 Phenotype denotes hypoxia http://purl.obolibrary.org/obo/HP_0012418
T36 17122-17131 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T37 20989-21003 Phenotype denotes cytokine storm http://purl.obolibrary.org/obo/HP_0033041
T38 21914-21927 Phenotype denotes liver disease http://purl.obolibrary.org/obo/HP_0001392
T39 22683-22688 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T40 22964-22986 Phenotype denotes respiratory infections http://purl.obolibrary.org/obo/HP_0011947

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1 4-21 Species denotes Novel Coronavirus Tax:2697049
4 147-152 Species denotes human Tax:9606
5 171-182 Species denotes coronavirus Tax:11118
23 885-890 Species denotes human Tax:9606
24 1069-1084 Species denotes bat coronavirus Tax:1508220
25 1182-1191 Species denotes 2019‐nCoV Tax:2697049
26 1196-1213 Species denotes novel coronavirus Tax:2697049
27 1242-1252 Species denotes SARS‐CoV‐2 Tax:2697049
28 1391-1402 Species denotes coronavirus Tax:11118
29 1446-1464 Species denotes novel’ coronavirus Tax:2697049
30 1543-1559 Species denotes SARS coronavirus Tax:694009
31 1584-1594 Species denotes SARS‐CoV‐2 Tax:2697049
32 1635-1645 Species denotes SARS virus Tax:694009
33 556-565 Disease denotes pneumonia MESH:D011014
34 654-664 Disease denotes infections MESH:D007239
35 829-853 Disease denotes zoonotic virus infection MESH:D015047
36 924-950 Disease denotes acute respiratory syndrome MESH:D012120
37 952-956 Disease denotes SARS MESH:D045169
38 1025-1029 Disease denotes SARS MESH:D045169
39 1308-1316 Disease denotes COVID‐19 MESH:C000657245
59 2011-2028 Species denotes novel coronavirus Tax:2697049
60 2279-2287 Species denotes patients Tax:9606
61 2412-2417 Species denotes human Tax:9606
62 2675-2680 Species denotes human Tax:9606
63 2767-2772 Species denotes human Tax:9606
64 2871-2877 Species denotes humans Tax:9606
65 2998-3011 Species denotes coronaviruses Tax:11118
66 3159-3176 Species denotes novel coronavirus Tax:2697049
67 3276-3293 Species denotes betacoronaviruses Tax:694002
68 3304-3314 Species denotes SARS virus Tax:694009
69 3445-3462 Species denotes novel coronavirus Tax:2697049
70 3649-3654 Species denotes human Tax:9606
71 3886-3897 Species denotes coronavirus Tax:11118
72 3975-3992 Species denotes Novel Coronavirus Tax:2697049
73 4074-4087 Species denotes coronaviruses Tax:11118
74 4099-4107 Species denotes patients Tax:9606
75 4256-4264 Species denotes patients Tax:9606
76 4269-4274 Species denotes human Tax:9606
77 3260-3264 Disease denotes SARS MESH:D045169
83 4847-4851 Gene denotes ACE2 Gene:59272
84 4515-4526 Species denotes coronavirus Tax:11118
85 4600-4607 Species denotes patient Tax:9606
86 4807-4812 Species denotes human Tax:9606
87 4427-4435 Disease denotes zoonosis
108 6405-6409 Gene denotes ACE2 Gene:59272
109 5012-5020 Species denotes patients Tax:9606
110 5185-5198 Species denotes coronaviruses Tax:11118
111 5247-5255 Species denotes patients Tax:9606
112 5270-5281 Species denotes coronavirus Tax:11118
113 5519-5527 Species denotes patients Tax:9606
114 5537-5544 Species denotes patient Tax:9606
115 5711-5719 Species denotes patients Tax:9606
116 5938-5945 Species denotes patient Tax:9606
117 6234-6242 Species denotes patients Tax:9606
118 6332-6349 Species denotes novel coronavirus Tax:2697049
119 6421-6426 Species denotes human Tax:9606
120 6454-6459 Species denotes mouse Tax:10090
121 6489-6506 Species denotes novel coronavirus Tax:2697049
122 6556-6572 Species denotes SARS coronavirus Tax:694009
123 5054-5063 Disease denotes pneumonia MESH:D011014
124 5770-5779 Disease denotes infection MESH:D007239
125 6072-6080 Disease denotes infected MESH:D007239
126 6314-6322 Disease denotes infected MESH:D007239
127 6290-6294 CellLine denotes HeLa CVCL:0030
133 6630-6647 Species denotes novel coronavirus Tax:2697049
134 6670-6678 Species denotes patients Tax:9606
135 6913-6921 Species denotes patients Tax:9606
136 7104-7123 Species denotes novel coronaviruses Tax:2697049
137 7129-7139 Species denotes SARS virus Tax:694009
185 8387-8390 Gene denotes age Gene:5973
186 7323-7331 Species denotes patients Tax:9606
187 7490-7498 Species denotes patients Tax:9606
188 7835-7843 Species denotes patients Tax:9606
189 7920-7928 Species denotes patients Tax:9606
190 8069-8077 Species denotes patients Tax:9606
191 8150-8158 Species denotes patients Tax:9606
192 8264-8272 Species denotes patients Tax:9606
193 8510-8518 Species denotes patients Tax:9606
194 8774-8782 Species denotes patients Tax:9606
195 9014-9022 Species denotes patients Tax:9606
196 9359-9367 Species denotes patients Tax:9606
197 9389-9397 Species denotes patients Tax:9606
198 9448-9456 Species denotes patients Tax:9606
199 9697-9704 Species denotes infants Tax:9606
200 9777-9784 Species denotes infants Tax:9606
201 7409-7428 Disease denotes 2019‐nCoV infection MESH:C000657245
202 7652-7657 Disease denotes fever MESH:D005334
203 7665-7670 Disease denotes cough MESH:D003371
204 7681-7688 Disease denotes myalgia MESH:D063806
205 7692-7699 Disease denotes fatigue MESH:D005221
206 7707-7715 Disease denotes Dyspnoea MESH:D004417
207 7768-7803 Disease denotes acute respiratory distress syndrome MESH:D012128
208 7805-7809 Disease denotes ARDS MESH:D012128
209 7936-7947 Disease denotes lymphopenia MESH:D008231
210 8177-8196 Disease denotes 2019‐nCoV infection MESH:C000657245
211 8443-8459 Disease denotes chronic diseases MESH:D002908
212 8524-8529 Disease denotes fever MESH:D005334
213 8537-8542 Disease denotes cough MESH:D003371
214 8553-8572 Disease denotes shortness of breath MESH:D004417
215 8616-8625 Disease denotes pneumonia MESH:D011014
216 8676-8680 Disease denotes ARDS MESH:D012128
217 8716-8721 Disease denotes death MESH:D003643
218 8727-8749 Disease denotes multiple organ failure MESH:D009102
219 8798-8825 Disease denotes novel coronavirus infection MESH:C000657245
220 9165-9170 Disease denotes fever MESH:D005334
221 9178-9185 Disease denotes fatigue MESH:D005221
222 9196-9205 Disease denotes dry cough MESH:D003371
223 9225-9233 Disease denotes anorexia MESH:D000855
224 9235-9242 Disease denotes myalgia MESH:D063806
225 9247-9255 Disease denotes dyspnoea MESH:D004417
226 9479-9491 Disease denotes hypertension MESH:D006973
227 9493-9515 Disease denotes cardiovascular disease MESH:D002318
228 9520-9528 Disease denotes diabetes MESH:D003920
229 9563-9571 Disease denotes infected MESH:D007239
230 9659-9679 Disease denotes 2019‐nCoV infections MESH:C000657245
231 9748-9756 Disease denotes infected MESH:D007239
257 10312-10315 Gene denotes age Gene:5973
258 10261-10264 Gene denotes age Gene:5973
259 9915-9932 Species denotes novel coronavirus Tax:2697049
260 10356-10364 Species denotes patients Tax:9606
261 10425-10433 Species denotes patients Tax:9606
262 10466-10473 Species denotes patient Tax:9606
263 10487-10494 Species denotes persons Tax:9606
264 11568-11576 Species denotes children Tax:9606
265 11774-11779 Species denotes human Tax:9606
266 11783-11788 Species denotes human Tax:9606
267 12036-12044 Species denotes patients Tax:9606
268 12269-12276 Species denotes patient Tax:9606
269 12400-12408 Species denotes patients Tax:9606
270 10200-10209 Disease denotes infection MESH:D007239
271 10503-10523 Disease denotes respiratory symptoms MESH:D012818
272 11071-11081 Disease denotes infections MESH:D007239
273 11226-11231 Disease denotes fever MESH:D005334
274 11233-11238 Disease denotes cough MESH:D003371
275 11243-11251 Disease denotes dyspnoea MESH:D004417
276 11347-11367 Disease denotes respiratory symptoms MESH:D012818
277 11480-11485 Disease denotes fever MESH:D005334
278 11487-11492 Disease denotes cough MESH:D003371
279 11494-11502 Disease denotes weakness MESH:D018908
280 11507-11516 Disease denotes diarrhoea MESH:D003967
281 12391-12399 Disease denotes infected MESH:D007239
297 13378-13382 Gene denotes ACE2 Gene:59272
298 12700-12717 Species denotes novel coronavirus Tax:2697049
299 12765-12772 Species denotes patient Tax:9606
300 12830-12837 Species denotes patient Tax:9606
301 12951-12958 Species denotes patient Tax:9606
302 13133-13144 Species denotes coronavirus Tax:11118
303 13405-13422 Species denotes novel coronavirus Tax:2697049
304 13543-13551 Species denotes patients Tax:9606
305 13586-13595 Species denotes 2019‐nCoV Tax:2697049
306 13596-13604 Species denotes patients Tax:9606
307 13726-13734 Species denotes patients Tax:9606
308 13829-13836 Species denotes patient Tax:9606
309 12848-12868 Disease denotes respiratory symptoms MESH:D012818
310 12969-12978 Disease denotes diarrhoea MESH:D003967
311 13805-13814 Disease denotes diarrhoea MESH:D003967
317 14296-14305 Species denotes 2019‐nCoV Tax:2697049
318 14577-14584 Species denotes persons Tax:9606
319 14604-14611 Species denotes persons Tax:9606
320 14478-14486 Disease denotes infected MESH:D007239
321 14568-14576 Disease denotes infected MESH:D007239
332 14731-14748 Species denotes novel coronavirus Tax:2697049
333 15359-15365 Species denotes people Tax:9606
334 14921-14930 Disease denotes infection MESH:D007239
335 15006-15014 Disease denotes infected MESH:D007239
336 15079-15087 Disease denotes infected MESH:D007239
337 15562-15590 Disease denotes novel coronavirus infections MESH:C000657245
338 15592-15614 Disease denotes respiratory infections MESH:D012141
339 15636-15646 Disease denotes infections MESH:D007239
340 15776-15784 Disease denotes infected MESH:D007239
341 16140-16150 Disease denotes infections MESH:D007239
357 16722-16730 Species denotes patients Tax:9606
358 16810-16818 Species denotes patients Tax:9606
359 16979-16996 Species denotes novel coronavirus Tax:2697049
360 17132-17140 Species denotes patients Tax:9606
361 17248-17265 Species denotes novel coronavirus Tax:2697049
362 17288-17295 Species denotes patient Tax:9606
363 17385-17396 Species denotes coronavirus Tax:11118
364 17083-17089 Chemical denotes oxygen MESH:D010100
365 17159-17166 Chemical denotes arbidol MESH:C086979
366 17369-17376 Chemical denotes arbidol MESH:C086979
367 16917-16926 Disease denotes pneumonia MESH:D011014
368 16938-16953 Disease denotes viral pneumonia
369 17036-17044 Disease denotes dyspnoea MESH:D004417
370 17049-17056 Disease denotes hypoxia MESH:D000860
371 17116-17131 Disease denotes viral pneumonia
389 17594-17607 Species denotes coronaviruses Tax:11118
390 17645-17696 Species denotes Middle East Respiratory Syndrome (MERS) coronavirus Tax:1335626
391 17804-17810 Species denotes camels Tax:9837
392 17969-17982 Species denotes coronaviruses Tax:11118
393 18020-18037 Species denotes novel coronavirus Tax:2697049
394 18081-18088 Species denotes patient Tax:9606
395 18561-18576 Species denotes herbal medicine Tax:1407750
396 18604-18608 Species denotes Lian Tax:155640
397 18693-18701 Species denotes patients Tax:9606
398 18131-18140 Chemical denotes lopinavir MESH:D061466
399 18182-18191 Chemical denotes ritonavir MESH:D019438
400 18247-18256 Chemical denotes lopinavir MESH:D061466
401 17637-17641 Disease denotes SARS MESH:D045169
402 17746-17750 Disease denotes SARS MESH:D045169
403 17757-17777 Disease denotes coronavirus zoonosis MESH:D018352
404 17955-17959 Disease denotes SARS MESH:D045169
405 18429-18454 Disease denotes new coronavirus infection MESH:C000657245
436 18977-18994 Species denotes novel coronavirus Tax:2697049
437 19169-19186 Species denotes novel coronavirus Tax:2697049
438 19553-19569 Species denotes MERS coronavirus Tax:1335626
439 19670-19675 Species denotes mouse Tax:10090
440 19695-19700 Species denotes mouse Tax:10090
441 19897-19907 Species denotes MERS virus Tax:1335626
442 19919-19933 Species denotes rhesus monkeys Tax:9544
443 20208-20222 Species denotes rhesus monkeys Tax:9544
444 20389-20397 Species denotes patients Tax:9606
445 20498-20506 Species denotes patients Tax:9606
446 21018-21026 Species denotes patients Tax:9606
447 19085-19095 Chemical denotes remdesivir MESH:C000606551
448 19126-19137 Chemical denotes chloroquine MESH:D002738
449 19230-19240 Chemical denotes Remdesivir MESH:C000606551
450 19309-19320 Chemical denotes chloroquine MESH:D002738
451 19376-19387 Chemical denotes chloroquine MESH:D002738
452 19512-19522 Chemical denotes remdesivir MESH:C000606551
453 19598-19607 Chemical denotes lopinavir MESH:D061466
454 19622-19631 Chemical denotes ritonavir MESH:D019438
455 19722-19732 Chemical denotes remdesivir MESH:C000606551
456 19860-19870 Chemical denotes remdesivir MESH:C000606551
457 20130-20140 Chemical denotes remdesivir MESH:C000606551
458 20330-20340 Chemical denotes remdesivir MESH:C000606551
459 19109-19116 Disease denotes malaria MESH:D008288
460 19365-19374 Disease denotes infection MESH:D007239
461 19676-19686 Disease denotes infections MESH:D007239
462 19706-19715 Disease denotes infection MESH:D007239
463 20420-20445 Disease denotes novel coronavirus disease MESH:C000657245
464 20757-20761 Disease denotes SARS MESH:D045169
465 21032-21060 Disease denotes novel coronavirus infections MESH:C000657245
485 21385-21391 Species denotes humans Tax:9606
486 22351-22358 Species denotes patient Tax:9606
487 23069-23077 Species denotes patients Tax:9606
488 23283-23290 Species denotes persons Tax:9606
489 23435-23452 Species denotes novel coronavirus Tax:2697049
490 21112-21116 Disease denotes SARS MESH:D045169
491 21168-21172 Disease denotes SARS MESH:D045169
492 21454-21473 Disease denotes zoonotic infections MESH:D015047
493 21485-21507 Disease denotes coronavirus infections MESH:D018352
494 21878-21888 Disease denotes rheumatism MESH:D012216
495 21900-21911 Disease denotes obstruction MESH:D000402
496 21914-21927 Disease denotes liver disease MESH:D008107
497 22300-22320 Disease denotes nosocomial infection MESH:D003428
498 22683-22688 Disease denotes cough MESH:D003371
499 22964-22986 Disease denotes respiratory infections MESH:D012141
500 22992-22996 Disease denotes SARS MESH:D045169
501 23315-23324 Disease denotes infection MESH:D007239
502 23703-23719 Disease denotes viral infections MESH:D001102
503 23737-23753 Disease denotes zoonosis impacts MESH:D014095