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PMC:7110798 / 6585-8673 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
70 1538-1542 Disease denotes MERS MESH:D018352
71 1588-1592 Disease denotes SARS MESH:D045169
76 1993-1997 Disease denotes MERS MESH:D018352
77 2014-2034 Disease denotes Respiratory Syndrome MESH:D012120
78 2041-2045 Disease denotes SARS MESH:D045169
79 2054-2087 Disease denotes Severe Acute Respiratory Syndrome MESH:D045169
87 400-409 Species denotes 2019-nCoV Tax:2697049
88 709-718 Species denotes 2019-nCoV Tax:2697049
89 820-829 Species denotes 2019-nCoV Tax:2697049
90 771-775 Disease denotes SARS MESH:D045169
91 780-784 Disease denotes MERS MESH:D018352
92 939-943 Disease denotes MERS MESH:D018352
93 1011-1015 Disease denotes SARS MESH:D045169

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T12 162-165 Disease denotes NLS http://purl.obolibrary.org/obo/MONDO_0000179
T13 771-775 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T14 1011-1015 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T15 1588-1592 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T16 2041-2045 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T17 2054-2087 Disease denotes Severe Acute Respiratory Syndrome http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T28 798-799 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T29 876-877 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T30 1078-1083 http://purl.obolibrary.org/obo/UBERON_0000033 denotes heads
T31 1078-1083 http://www.ebi.ac.uk/efo/EFO_0000964 denotes heads
T32 1449-1461 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T5 570-572 Chemical denotes SI http://purl.obolibrary.org/obo/CHEBI_90326
T6 673-675 Chemical denotes SI http://purl.obolibrary.org/obo/CHEBI_90326
T7 751-753 Chemical denotes SI http://purl.obolibrary.org/obo/CHEBI_90326
T8 919-921 Chemical denotes SD http://purl.obolibrary.org/obo/CHEBI_74807
T9 992-994 Chemical denotes SD http://purl.obolibrary.org/obo/CHEBI_74807
T10 1543-1545 Chemical denotes SI http://purl.obolibrary.org/obo/CHEBI_90326
T11 1556-1558 Chemical denotes SI http://purl.obolibrary.org/obo/CHEBI_90326
T12 1593-1595 Chemical denotes SI http://purl.obolibrary.org/obo/CHEBI_90326
T13 1968-1970 Chemical denotes SI http://purl.obolibrary.org/obo/CHEBI_90326

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T10 126-132 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T11 245-251 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T12 280-286 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T13 316-328 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction
T14 1163-1175 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T57 0-133 Sentence denotes Following previous studies (Zhao et al., 2019, de Silva et al., 2009), we modelled the epidemic curve obeying the exponential growth.
T58 134-230 Sentence denotes The nonlinear least square (NLS) framework is adopted for data fitting and parameter estimation.
T59 231-430 Sentence denotes The intrinsic growth rate (γ) of the exponential growth was estimated, and the basic reproduction number could be obtained by R 0 = 1/M(−γ) with 100% susceptibility for 2019-nCoV at this early stage.
T60 431-676 Sentence denotes The function M(∙) is the Laplace transform, i.e., the moment generating function, of the probability distribution for the serial interval (SI) of the disease (Zhao et al., 2019, Wallinga and Lipsitch, 2007), denoted by h(k) and k is the mean SI.
T61 677-830 Sentence denotes Since the transmission chain of 2019-nCoV remains unclear, we adopted the SI information from SARS and MERS, which share a similar pathogen as 2019-nCoV.
T62 831-1113 Sentence denotes We modelled h(k) as Gamma distributions with a mean of 7.6 days and standard deviation (SD) of 3.4 days for MERS (Assiri et al., 2013), and mean of 8.4 days and SD of 3.8 days for SARS (Lipsitch et al., 2003) as well as their average, see the row heads in Table 1 for each scenario.
T63 1114-1214 Sentence denotes Table 1 The summary table of the estimated basic reproduction number, R0, under different scenarios.
T64 1215-1275 Sentence denotes The estimated R0 is shown as in the ‘median (95%CI)’ format.
T65 1276-1491 Sentence denotes The ‘reporting rate increased’ indicates the number of fold increase in the reporting rate from January 17, when WHO released the official diagnostic protocol (World Health Organization, 2020b), to January 20, 2020.
T66 1492-1529 Sentence denotes Reporting rate increased Estimated R0
T67 1530-1605 Sentence denotes Same as MERS SI 7.6 ± 3.4 SI in average 8.0 ± 3.6 Same as SARS SI 8.4 ± 3.8
T68 1606-1668 Sentence denotes (unchanged) 5.31 (3.99–6.96) 5.71 (4.24–7.54) 6.11 (4.51–8.16)
T69 1669-1728 Sentence denotes 0.5-fold 4.52 (3.49–5.76) 4.82 (3.69–6.20) 5.14 (3.90–6.67)
T70 1729-1786 Sentence denotes 1-fold 4.01 (3.17–5.02) 4.26 (3.34–5.38) 4.53 (3.51–5.76)
T71 1787-1844 Sentence denotes 2-fold 3.38 (2.75–4.12) 3.58 (2.89–4.39) 3.77 (3.02–4.67)
T72 1845-1902 Sentence denotes 4-fold 2.73 (2.31–3.22) 2.86 (2.40–3.39) 3.00 (2.50–3.58)
T73 1903-1960 Sentence denotes 8-fold 2.16 (1.90–2.45) 2.24 (1.96–2.55) 2.32 (2.02–2.66)
T74 1961-2088 Sentence denotes Note: ‘SI’ is serial interval. ‘MERS’ is Middle East Respiratory Syndrome, and ‘SARS’ is the Severe Acute Respiratory Syndrome.

2_test

Id Subject Object Predicate Lexical cue
32007643-31300061-50057613 41-45 31300061 denotes 2019
32007643-19660247-50057614 64-68 19660247 denotes 2009
32007643-31300061-50057615 603-607 31300061 denotes 2019
32007643-23782161-50057616 960-964 23782161 denotes 2013
32007643-12766207-50057617 1034-1038 12766207 denotes 2003
T56401 41-45 31300061 denotes 2019
T50759 64-68 19660247 denotes 2009
T14309 603-607 31300061 denotes 2019
T33857 960-964 23782161 denotes 2013
T56636 1034-1038 12766207 denotes 2003