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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 0-6 Body_part denotes Mental http://purl.org/sig/ont/fma/fma264279
T2 2372-2378 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T3 2588-2594 Body_part denotes Mental http://purl.org/sig/ont/fma/fma264279
T4 3177-3183 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T5 3441-3447 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T6 4693-4699 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T7 4939-4945 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T8 5164-5170 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T9 5314-5320 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279

LitCovid_AGAC

Id Subject Object Predicate Lexical cue
p62399s32 4183-4193 NegReg denotes eliminates

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 50-58 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T2 139-147 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T3 196-205 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T4 1044-1052 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T5 1126-1133 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T7 1177-1186 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T8 1410-1417 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T10 1951-1959 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T11 2091-2098 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T13 2439-2460 Disease denotes acute stress disorder http://purl.obolibrary.org/obo/MONDO_0003763
T14 2462-2472 Disease denotes depression http://purl.obolibrary.org/obo/MONDO_0002050
T15 2474-2504 Disease denotes post-traumatic stress disorder http://purl.obolibrary.org/obo/MONDO_0005146
T16 2479-2504 Disease denotes traumatic stress disorder http://purl.obolibrary.org/obo/MONDO_0003763
T17 2506-2514 Disease denotes insomnia http://purl.obolibrary.org/obo/MONDO_0013600
T18 2799-2807 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T19 3248-3256 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T20 3352-3358 Disease denotes Trauma http://purl.obolibrary.org/obo/MONDO_0021178
T21 3719-3727 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T22 4521-4529 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T23 4534-4538 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T24 4571-4576 Disease denotes Ebola http://purl.obolibrary.org/obo/MONDO_0005737
T25 4855-4864 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 149-152 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T2 719-722 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T3 928-929 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 1478-1479 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 1551-1552 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T6 1613-1619 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T7 1637-1642 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T8 1651-1654 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T9 1655-1658 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T10 1794-1797 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T11 2340-2345 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T12 2747-2750 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T13 2997-3002 http://purl.obolibrary.org/obo/CLO_0009985 denotes focus
T14 3360-3361 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T15 3387-3390 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T16 3641-3651 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T17 3821-3822 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 4057-4062 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T19 4302-4303 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 4969-4974 http://purl.obolibrary.org/obo/CLO_0009985 denotes focus
T21 5060-5061 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T22 5303-5304 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 3932-3941 http://purl.obolibrary.org/obo/GO_0009056 denotes breakdown

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-68 Sentence denotes Mental Health and Psychological Intervention Amid COVID-19 Outbreak:
T2 69-98 Sentence denotes Perspectives from South Korea
T3 100-268 Sentence denotes The 2019 novel coronavirus (2019-nCoV, COVID-19) has been identified as the pathogen behind the pneumonia outbreak in Wuhan, Hubei Province, China, on December 8, 2019.
T4 269-630 Sentence denotes In South Korea, the country's first patient (who flew in from Wuhan) was identified on January 20, 2020.1 Until February 17, the number of confirmed cases remained relatively stable, with 30 diagnosed patients; however, the situation changed drastically after identification of the 31st patient, and the number of confirmed cases jumped to 2,022 by February 28.
T5 631-922 Sentence denotes The South Korean government and the Korea Centers for Disease Control and Prevention (K-CDC) regularly report the daily status of new patients, as well as their physical condition and the places they recently visited, in order to ensure people remain well-informed about the epidemic status.
T6 923-1053 Sentence denotes With a significant volume of news coming from various sources, there have been rising concerns of “fake news” related to COVID-19.
T7 1054-1149 Sentence denotes People constantly consume news to stay updated, and may experience high anxiety while doing so.
T8 1150-1418 Sentence denotes In addition, the source of infection remains uncertain in some cases, while travel bans and instructions to quarantine travellers and citizens have also been issued; such factors may drive people to feel that “there is no safe place,” which can amplify public anxiety.
T9 1419-1644 Sentence denotes This could lead to more severe consequences; for instance, a woman committed suicide2 after suspecting herself to be infected after a recent trip to China (autopsy later revealed that the woman tested negative for the virus).
T10 1645-2002 Sentence denotes The K-CDC has distributed leaflets to the public and continues to issue guidelines for preventing COVID-19.3 The Korean Neuropsychiatric Association has also published guidelines4 targeting five population domains: the public, parents of young children, quarantined people, medical professionals who treat COVID-19 patients, and other medical practitioners.
T11 2003-2189 Sentence denotes These guidelines, released by the Ministry of Health and Welfare, suggest perceiving an anxiety response to an outbreak as normal and refraining from the act of avoiding specific groups.
T12 2190-2251 Sentence denotes They also highlight the need to rely on credible information.
T13 2252-2808 Sentence denotes Furthermore, quarantine and isolation of those suspected of contracting or carrying the virus could provoke substantial mental health problems; these situations are known to be linked to acute stress disorder, depression, post-traumatic stress disorder, insomnia, irritability, anger, and emotional exhaustion.5 The National Center for Mental Health (NCMH) is offering psychological counselling for people who are quarantined in Daegu as well as those who have recently returned from Wuhan, and has released guidelines for people with symptoms of COVID-19.
T14 2809-3038 Sentence denotes Similar to the Korean Neuropsychiatric Association, the NCMH is advising the public to cooperate with the quarantine authorities and build skills to relax during distress—the instructions focus on individual skills and knowledge.
T15 3039-3318 Sentence denotes Moreover, the Psychological Support Group Network of the Ministry of Health and Welfare provides information6 on hotlines for the current mental health crisis; the response system is different for people with COVID-19 and their families versus the quarantined and general public.
T16 3319-3495 Sentence denotes The National Center for Disaster Trauma, a subdivision of the NCMH, has also released leaflets warning about the possible mental health problems, as well as guidelines to cope.
T17 3496-3687 Sentence denotes These underline the importance of getting reliable information, maintaining social networks, expressing negative emotions, continuing daily life activities, and pursuing pleasant experiences.
T18 3688-3811 Sentence denotes In summary, amid the spread of COVID-19 in South Korea, psychological interventions are being performed in several aspects.
T19 3812-3891 Sentence denotes However, a public approach is needed to overcome common psychological barriers.
T20 3892-4006 Sentence denotes Two of the most common problems are the breakdown of social support structures and the stigmatization of patients.
T21 4007-4279 Sentence denotes As people are trying to avoid transmission of the virus, social support structures are breaking apart; places like churches, schools, and workplaces have been shut down, which eliminates the benefits of social support and may cause feelings of isolation and vulnerability.
T22 4280-4588 Sentence denotes Furthermore, there is a high chance of the disease itself being stigmatized, as it is new and incurable.7 Most stigmatization targets are patients or specific groups of people (i.e., People with specific religion in south Korea or Asians in COVID-19 and SARS outbreaks, and West Africans in Ebola outbreaks).
T23 4589-4716 Sentence denotes The targeted people are often removed from their social support system, which can lead to isolation and mental health problems.
T24 4717-4905 Sentence denotes More importantly, stigmatization can drive potential patients to avoid accessing the healthcare system, and instead, continuing to spread infection over worries of being shunned by others.
T25 4906-5027 Sentence denotes However, the current approach to mental health issues seems to focus mostly on individual factors rather than the public.
T26 5028-5147 Sentence denotes Therefore, the establishment of a public system is crucial to verify the validity of information released by the media.
T27 5148-5293 Sentence denotes Communities and mental health authorities should consistently make efforts to enhance social support systems and eliminate stigma of the disease.
T28 5294-5445 Sentence denotes Building a targeted mental healthcare strategy for different population domains, including the quarantined and medical staff, would also be beneficial.
T29 5447-5511 Sentence denotes The authors have no potential conflicts of interest to disclose.
T30 5512-5533 Sentence denotes AUTHOR CONTRIBUTIONS:
T31 5534-5552 Sentence denotes Conceptualization:
T32 5553-5566 Sentence denotes Sun Jae Jung.
T33 5567-5581 Sentence denotes Data curation:
T34 5582-5595 Sentence denotes Sun Jae Jung.
T35 5596-5612 Sentence denotes Formal analysis:
T36 5613-5626 Sentence denotes Sun Jae Jung.
T37 5627-5647 Sentence denotes Funding acquisition:
T38 5648-5661 Sentence denotes Sun Jae Jung.
T39 5662-5676 Sentence denotes Investigation:
T40 5677-5690 Sentence denotes Sun Jae Jung.
T41 5691-5703 Sentence denotes Methodology:
T42 5704-5717 Sentence denotes Sun Jae Jung.
T43 5718-5741 Sentence denotes Project administration:
T44 5742-5755 Sentence denotes Sun Jae Jung.
T45 5756-5766 Sentence denotes Resources:
T46 5767-5797 Sentence denotes Sun Jae Jung and Jin Yong Kim.
T47 5798-5807 Sentence denotes Software:
T48 5808-5821 Sentence denotes Sun Jae Jung.
T49 5822-5834 Sentence denotes Supervision:
T50 5835-5848 Sentence denotes Sun Jae Jung.
T51 5849-5860 Sentence denotes Validation:
T52 5861-5891 Sentence denotes Sun Jae Jung and Jin Yong Kim.
T53 5892-5906 Sentence denotes Visualization:
T54 5907-5920 Sentence denotes Sun Jae Jung.
T55 5921-5944 Sentence denotes Writing—original draft:
T56 5945-5958 Sentence denotes Sun Jae Jung.
T57 5959-5984 Sentence denotes Writing—review & editing:
T58 5985-6015 Sentence denotes Sun Jae Jung and Jin Yong Kim.
T59 6016-6058 Sentence denotes Approval of final manuscript: all authors.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 196-205 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T2 1126-1133 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T3 1410-1417 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T4 2091-2098 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T5 2462-2472 Phenotype denotes depression http://purl.obolibrary.org/obo/HP_0000716
T6 2506-2514 Phenotype denotes insomnia http://purl.obolibrary.org/obo/HP_0100785
T7 2516-2528 Phenotype denotes irritability http://purl.obolibrary.org/obo/HP_0000737

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1 50-58 Disease denotes COVID-19 MESH:C000657245
9 104-126 Species denotes 2019 novel coronavirus Tax:2697049
10 128-137 Species denotes 2019-nCoV Tax:2697049
11 305-312 Species denotes patient Tax:9606
12 470-478 Species denotes patients Tax:9606
13 556-563 Species denotes patient Tax:9606
14 139-147 Disease denotes COVID-19 MESH:C000657245
15 196-205 Disease denotes pneumonia MESH:D011014
18 765-773 Species denotes patients Tax:9606
19 868-874 Species denotes people Tax:9606
29 1054-1060 Species denotes People Tax:9606
30 1339-1345 Species denotes people Tax:9606
31 1480-1485 Species denotes woman Tax:9606
32 1607-1612 Species denotes woman Tax:9606
33 1044-1052 Disease denotes COVID-19 MESH:C000657245
34 1126-1133 Disease denotes anxiety MESH:D001007
35 1177-1186 Disease denotes infection MESH:D007239
36 1410-1417 Disease denotes anxiety MESH:D001007
37 1536-1544 Disease denotes infected MESH:D007239
44 1889-1897 Species denotes children Tax:9606
45 1911-1917 Species denotes people Tax:9606
46 1960-1968 Species denotes patients Tax:9606
47 1743-1751 Disease denotes COVID-19 MESH:C000657245
48 1951-1959 Disease denotes COVID-19 MESH:C000657245
49 2091-2098 Disease denotes anxiety MESH:D001007
58 2651-2657 Species denotes people Tax:9606
59 2775-2781 Species denotes people Tax:9606
60 2445-2460 Disease denotes stress disorder MESH:D000079225
61 2462-2472 Disease denotes depression MESH:D000275
62 2479-2504 Disease denotes traumatic stress disorder MESH:D040921
63 2506-2514 Disease denotes insomnia MESH:D007319
64 2516-2528 Disease denotes irritability MESH:D001523
65 2799-2807 Disease denotes COVID-19 MESH:C000657245
69 3236-3242 Species denotes people Tax:9606
70 3248-3256 Disease denotes COVID-19 MESH:C000657245
71 3352-3358 Disease denotes Trauma MESH:D014947
84 3997-4005 Species denotes patients Tax:9606
85 4010-4016 Species denotes people Tax:9606
86 4418-4426 Species denotes patients Tax:9606
87 4449-4455 Species denotes people Tax:9606
88 4463-4469 Species denotes People Tax:9606
89 4571-4576 Species denotes Ebola Tax:1570291
90 4602-4608 Species denotes people Tax:9606
91 4770-4778 Species denotes patients Tax:9606
92 3719-3727 Disease denotes COVID-19 MESH:C000657245
93 4521-4529 Disease denotes COVID-19 MESH:C000657245
94 4534-4538 Disease denotes SARS MESH:D045169
95 4855-4864 Disease denotes infection MESH:D007239
97 5271-5292 Disease denotes stigma of the disease MESH:D003141