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PMC:7104264 / 75-7112 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
5 43-49 Disease denotes deaths MESH:D003643
6 106-130 Disease denotes coronavirus disease 2019 MESH:C000657245
7 132-140 Disease denotes COVID-19 MESH:C000657245
11 1403-1406 Gene denotes sea Gene:6395
12 1490-1496 Species denotes people Tax:9606
13 1645-1651 Species denotes people Tax:9606
15 2253-2259 Species denotes people Tax:9606
17 3436-3444 Disease denotes COVID-19 MESH:C000657245
19 4318-4324 Species denotes stocks Tax:3724
22 4843-4851 Species denotes patients Tax:9606
23 4860-4868 Disease denotes infected MESH:D007239

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T19 2311-2315 CHEBI:33290;CHEBI:33290 denotes food
T18 2626-2639 UBERON:0000467 denotes health system
T17 3436-3444 SP_7 denotes COVID-19
T16 3953-3957 UBERON:0001456 denotes face
T15 5923-5937 UBERON:0000467 denotes health systems
T14 6253-6272 UBERON:0007221 denotes intensive care unit
T27 43-49 GO:0016265 denotes deaths
T26 106-117 NCBITaxon:11118 denotes coronavirus
T25 132-140 SP_7 denotes COVID-19
T24 708-714 UBERON:0000467 denotes system
T23 1490-1496 NCBITaxon:9606 denotes people
T22 1645-1651 NCBITaxon:9606 denotes people
T21 2189-2196 GO:0065007 denotes control
T20 2253-2259 NCBITaxon:9606 denotes people

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 3953-3957 Body_part denotes face http://purl.org/sig/ont/fma/fma24728
T2 4709-4713 Body_part denotes back http://purl.org/sig/ont/fma/fma25056

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 3953-3957 Body_part denotes face http://purl.obolibrary.org/obo/UBERON_0001456

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T2 106-130 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T3 132-140 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T4 3436-3444 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 22-24 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T2 39-42 http://purl.obolibrary.org/obo/CLO_0054064 denotes 491
T3 72-75 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T4 186-187 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 224-228 http://purl.obolibrary.org/obo/CLO_0001557 denotes a 15
T6 310-313 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T7 391-397 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T8 635-636 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T9 699-700 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 1075-1076 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 1166-1169 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T12 1263-1264 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 1342-1343 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T14 1533-1534 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T15 1748-1749 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T16 1785-1788 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T17 1841-1842 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 2003-2008 http://www.ebi.ac.uk/efo/EFO_0001410 denotes armed
T19 2580-2581 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 2742-2743 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21 2880-2881 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T22 2931-2934 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T23 3012-3015 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T24 3026-3027 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T25 3162-3163 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T26 3850-3851 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T27 3928-3929 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T28 3953-3957 http://purl.obolibrary.org/obo/UBERON_0001456 denotes face
T29 4112-4117 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T30 4156-4159 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T31 4332-4334 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T32 4797-4798 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T33 5137-5138 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T34 5204-5207 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T35 6312-6316 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T36 6652-6655 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T37 6991-6994 http://purl.obolibrary.org/obo/CLO_0051582 denotes has

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 1432-1434 Chemical denotes La http://purl.obolibrary.org/obo/CHEBI_33336

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 1938-1947 http://purl.obolibrary.org/obo/GO_0006810 denotes transport
T2 6485-6496 http://purl.obolibrary.org/obo/GO_0007610 denotes behavioural

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T2 0-152 Sentence denotes Spain, with more than 11 000 cases and 491 deaths as of March 17, 2020, has one of the highest burdens of coronavirus disease 2019 (COVID-19) worldwide.
T3 153-274 Sentence denotes In response, its government used a royal decree (463/2020)1 to declare a 15-day national emergency, starting on March 15.
T4 275-553 Sentence denotes Although the Spanish health system has coped well during the 6 weeks since its first case was diagnosed, it will be tested severely in the coming weeks as there is already widespread community transmission in the most affected regions, Madrid, the Basque Country, and Catalonia.
T5 554-634 Sentence denotes The number of new cases in the country is increasing by more than 1000 each day.
T6 635-751 Sentence denotes A crisis such as this places pressure on all building blocks of a health system,2 each of which we consider in turn.
T7 752-776 Sentence denotes The first is governance.
T8 777-924 Sentence denotes Coordination is crucial in any country, but especially in one like Spain in which responsibility for health is devolved to 17 very diverse regions.
T9 925-1150 Sentence denotes The Health Alert and Emergency Coordination Centre (Centro de Coordinación de Alertas y Emergencias Sanitarias in Spanish), created in 2004, provides a mechanism for coordination between the national and regional governments.
T10 1151-1228 Sentence denotes This mechanism has not, however, ensured that measures are fully coordinated.
T11 1229-1423 Sentence denotes Thus, the Basque Country declared a public health emergency before any other region, whereas Catalonia requested a complete shutdown of the region, including closure of air, sea, and land ports.
T12 1424-1497 Sentence denotes Madrid, La Rioja, and Vitoria banned gatherings of more than 1000 people.
T13 1498-1744 Sentence denotes These measures were accompanied by a range of social distancing measures, including closure of schools, universities, libraries, centres for older people, and sporting venues, and even restricting all movement in some of the most affected areaS.3
T14 1745-2042 Sentence denotes In a country in which regional autonomy has been politically important, the new decree includes a controversial measure to give the central government sweeping new powers over health services, transport, and internal affairs, including giving members of the armed forces powers of law enforcement.
T15 2043-2197 Sentence denotes These measures have provoked opposition in Catalonia and the Basque Country, which have their own police forces that will now come under national control.
T16 2198-2493 Sentence denotes However, the imposition of restrictions on movement of people to allow only that necessary to get to work or buy food and medicines, as well as the closure of borders does seem to have been accepted, at least so far, with only limited disagreement among the main parties on the measures adopted.
T17 2494-2533 Sentence denotes The second building block is financing.
T18 2534-2663 Sentence denotes Before the decree, central government adopted a series of financial measures to support the health system and protect businesses.
T19 2664-2951 Sentence denotes It had allocated €2800 million to all regions for health services and created a new fund with €1000 million for priority health interventions.4 However, these amounts need to be seen against the background of almost a decade of austerity from which the health system has yet to recover.5
T20 2952-3080 Sentence denotes Third, in service delivery, the national Ministry of Health has developed a set of clinical protocols, published on its website.
T21 3081-3338 Sentence denotes Additional advice is published by certain regions and updated, in some cases, on a daily basis.6 Health facilities in the worst affected regions are struggling, with inadequate intensive care capacity and an insufficient number of ventilators in particular.
T22 3339-3435 Sentence denotes Both Catalonia and Madrid7 have cancelled non-emergency surgery and cleared beds where possible.
T23 3436-3524 Sentence denotes COVID-19 telephone help lines have long delays or have simply collapsed in some regions.
T24 3525-3679 Sentence denotes The new decree allows the regions to take over management of private health services while military installations will be used for public health purposes.
T25 3680-3724 Sentence denotes The fourth block is medicines and equipment.
T26 3725-3918 Sentence denotes So far, no serious shortages have been reported but supplies of personal protective equipment in health facilities have been a concern in all regions leading to re-use, despite the known risks.
T27 3919-3993 Sentence denotes There is a particular shortage of face masks caused by early panic buying.
T28 3994-4337 Sentence denotes These shortages have encouraged profiteering, with private laboratories, for example, charging exorbitant amounts for tests.8 In response, the central government has centralised purchasing and introduced price controls on medicines9 requiring companies producing relevant equipment to inform the central government of their stocks within 48 h.
T29 4338-4379 Sentence denotes The fifth block comprises health workers.
T30 4380-4452 Sentence denotes Many reports suggest that they are stretched to the point of exhaustion.
T31 4453-4574 Sentence denotes This situation in part reflects existing staff shortages, again following years of austerity with resultant low salaries.
T32 4575-4738 Sentence denotes Before the decree, patchy and insufficient measures were suggested such as cancelling holidays or bringing retired nurses and doctors back into the health service.
T33 4739-5022 Sentence denotes The problems are being exacerbated by the quarantining of a growing number of health workers exposed to patients who are infected.10 The new decree permits hiring graduates without specialisation, final year medical and nursing students, and extending contracts of medical residents.
T34 5023-5185 Sentence denotes The final building block, information, is widely considered to have been provided by authorities at all levels in a timely manner via mainstream and social media.
T35 5186-5339 Sentence denotes The Spanish media has largely acted responsibly, disseminating accurate information and debunking fake news stories circulating on social media networks.
T36 5340-5427 Sentence denotes These developments have coincided with changing attitudes among the Spanish population.
T37 5428-5574 Sentence denotes Initially, the disease attracted little attention, but this calm soon gave way to panic and hoarding of key supplies once cases began to increase.
T38 5575-5770 Sentence denotes However, many manifestations of solidarity have been seen, such as supporting health professionals, those who are most vulnerable, and voluntary social distancing, including greater home working.
T39 5771-5853 Sentence denotes Already, at least five important lessons can be drawn from the Spanish experience.
T40 5854-6000 Sentence denotes First, additional financial resources are needed to support regional health systems, each with different initial resources and current challenges.
T41 6001-6350 Sentence denotes Second, long-term underinvestment in health services, as seen in many countries following the 2008 financial crisis, impairs their resilience by depleting their ability to respond to surges in need for health care with sufficient health professionals, intensive care unit beds, protective equipment, diagnostic test kits, and mechanical ventilators.
T42 6351-6575 Sentence denotes Third, although Spanish residents do seem largely to have responded responsibly so far, it will be important to draw on evidence from behavioural sciences to ensure that this conduct continues over what could be many months.
T43 6576-6851 Sentence denotes Fourth, although coordination between the national and regional governments has generally been good, work will be needed to ensure this continues over the next few months, with an understanding that politicians must not be allowed to exploit the situation for political gain.
T44 6852-7037 Sentence denotes Finally, once the pandemic is over, Spain will need to address the decade of underinvestment in its previously strong health sector, which has left it struggling at this time of crisis.