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PMC:7103735 / 8664-9673 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T30 47-51 Body_part denotes back http://purl.org/sig/ont/fma/fma25056
T31 303-316 Body_part denotes bronchiolitis http://purl.org/sig/ont/fma/fma76497
T32 449-465 Body_part denotes epithelial cells http://purl.org/sig/ont/fma/fma66768
T33 460-465 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T34 849-872 Body_part denotes lower respiratory tract http://purl.org/sig/ont/fma/fma45662
T35 961-984 Body_part denotes lower respiratory tract http://purl.org/sig/ont/fma/fma45662

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T18 849-872 Body_part denotes lower respiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T19 855-872 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T20 961-984 Body_part denotes lower respiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T21 967-984 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T102 12-16 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T103 231-239 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T104 231-235 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T105 303-316 Disease denotes bronchiolitis http://purl.obolibrary.org/obo/MONDO_0002465
T106 336-345 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T107 579-599 Disease denotes respiratory diseases http://purl.obolibrary.org/obo/MONDO_0005087
T108 620-629 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T109 664-669 Disease denotes croup http://purl.obolibrary.org/obo/MONDO_0005722
T110 849-880 Disease denotes lower respiratory tract disease http://purl.obolibrary.org/obo/MONDO_0000270
T111 967-994 Disease denotes respiratory tract infection http://purl.obolibrary.org/obo/MONDO_0024355
T112 985-994 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T107 187-192 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T108 280-281 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T109 303-316 http://purl.obolibrary.org/obo/UBERON_0002186 denotes bronchiolitis
T110 321-322 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T111 436-441 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T112 442-448 http://purl.obolibrary.org/obo/UBERON_0001005 denotes airway
T113 449-459 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T114 460-465 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T115 650-655 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T116 703-710 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T117 765-771 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T118 849-872 http://purl.obolibrary.org/obo/UBERON_0001558 denotes lower respiratory tract
T119 895-896 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T120 961-984 http://purl.obolibrary.org/obo/UBERON_0001558 denotes lower respiratory tract

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T72 0-125 Sentence denotes In the post-SARS era, CoV research was brought back to the limelight and more effort was put into the search for novel HCoVs.
T73 126-240 Sentence denotes The search was fruitful and two new HCoVs were identified in human samples positive for HCoV but not for SARS-CoV.
T74 241-368 Sentence denotes NL63 and HKU1 were first isolated from a child suffering from bronchiolitis and a patient with pneumonia, respectively [14,15].
T75 369-503 Sentence denotes HKU1 is difficult to culture and can only be propagated in primary human airway epithelial cells cultured at the air–liquid interface.
T76 504-600 Sentence denotes Similar to 229E and OC43, NL63 and HKU1 were found worldwide, causing mild respiratory diseases.
T77 601-687 Sentence denotes Particularly, NL63 infection was associated with virus-induced croup in children [16].
T78 688-772 Sentence denotes All these four viruses are community-acquired HCoVs that are well adapted to humans.
T79 773-881 Sentence denotes Only in rare cases, they might be accidentally mutated to cause more severe lower respiratory tract disease.
T80 882-1009 Sentence denotes For example, a subtype of NL63 was recently found to be associated with severe lower respiratory tract infection in China [17].

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T15 303-316 Phenotype denotes bronchiolitis http://purl.obolibrary.org/obo/HP_0011950
T16 336-345 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T17 664-669 Phenotype denotes croup http://purl.obolibrary.org/obo/HP_0033000
T18 961-994 Phenotype denotes lower respiratory tract infection http://purl.obolibrary.org/obo/HP_0002783

2_test

Id Subject Object Predicate Lexical cue
32172672-15034574-27782208 361-363 15034574 denotes 14
32172672-16757599-27782209 364-366 16757599 denotes 15
32172672-16104827-27782210 683-685 16104827 denotes 16
32172672-31996093-27782211 1005-1007 31996093 denotes 17

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
246 22-25 Species denotes CoV Tax:11118
247 187-192 Species denotes human Tax:9606
248 231-239 Species denotes SARS-CoV Tax:694009
249 282-287 Species denotes child Tax:9606
250 323-330 Species denotes patient Tax:9606
251 436-441 Species denotes human Tax:9606
252 673-681 Species denotes children Tax:9606
253 765-771 Species denotes humans Tax:9606
254 241-245 Species denotes NL63 Tax:277944
255 530-534 Species denotes NL63 Tax:277944
256 615-619 Species denotes NL63 Tax:277944
257 908-912 Species denotes NL63 Tax:277944
258 303-316 Disease denotes bronchiolitis MESH:D001988
259 336-345 Disease denotes pneumonia MESH:D011014
260 579-599 Disease denotes respiratory diseases MESH:D012140
261 620-629 Disease denotes infection MESH:D007239
262 855-880 Disease denotes respiratory tract disease MESH:D012140
263 967-994 Disease denotes respiratory tract infection MESH:D012141

MyTest

Id Subject Object Predicate Lexical cue
32172672-15034574-27782208 361-363 15034574 denotes 14
32172672-16757599-27782209 364-366 16757599 denotes 15
32172672-16104827-27782210 683-685 16104827 denotes 16
32172672-31996093-27782211 1005-1007 31996093 denotes 17