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PMC:7103735 / 19662-28880 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T76 828-831 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T77 838-841 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T78 1116-1119 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T79 1169-1172 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T80 1380-1383 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T81 1630-1633 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T82 1897-1900 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T83 2122-2125 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T84 2132-2135 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T85 2440-2443 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T86 2450-2453 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T87 2529-2532 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T88 2539-2542 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T89 2558-2568 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T90 2613-2616 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T91 2718-2721 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T92 2766-2769 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T93 2855-2858 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T94 2865-2868 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T95 2920-2923 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T96 3025-3028 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T97 3155-3160 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T98 3696-3700 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712
T99 3940-3951 Body_part denotes cytoplasmic http://purl.org/sig/ont/fma/fma66835
T100 4104-4107 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T101 4132-4139 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T102 4358-4368 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T103 4448-4452 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T104 4507-4518 Body_part denotes spinal cord http://purl.org/sig/ont/fma/fma7647
T105 5010-5023 Body_part denotes T lymphocytes http://purl.org/sig/ont/fma/fma62870
T106 6014-6017 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T107 6021-6024 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T108 8487-8490 Body_part denotes CNS http://purl.org/sig/ont/fma/fma55675
T109 8865-8873 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T110 8914-8922 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T111 8968-8976 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T112 8996-9004 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T26 3696-3700 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398
T27 4507-4518 Body_part denotes spinal cord http://purl.obolibrary.org/obo/UBERON_0002240
T28 8487-8490 Body_part denotes CNS http://purl.obolibrary.org/obo/UBERON_0001017

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T195 275-283 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T196 275-279 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T197 305-313 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T198 305-309 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T199 491-499 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T200 491-495 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T201 550-558 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T202 550-554 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T203 593-602 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T204 662-670 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T205 662-666 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T206 867-875 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T207 867-871 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T208 880-888 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T209 880-884 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T210 915-923 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T211 915-919 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T212 1285-1301 Disease denotes immunodeficiency http://purl.obolibrary.org/obo/MONDO_0021094
T213 2724-2733 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T214 2803-2837 Disease denotes acquired immunodeficiency syndrome http://purl.obolibrary.org/obo/MONDO_0012268
T215 2803-2828 Disease denotes acquired immunodeficiency http://purl.obolibrary.org/obo/MONDO_0017769
T216 2812-2828 Disease denotes immunodeficiency http://purl.obolibrary.org/obo/MONDO_0021094
T217 2839-2843 Disease denotes AIDS http://purl.obolibrary.org/obo/MONDO_0012268
T218 2945-2949 Disease denotes AIDS http://purl.obolibrary.org/obo/MONDO_0012268
T219 3025-3038 Disease denotes HIV infection http://purl.obolibrary.org/obo/MONDO_0005109
T220 3029-3038 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T221 3058-3061 Disease denotes SIV http://purl.obolibrary.org/obo/MONDO_0010029
T222 3062-3071 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T223 3283-3286 Disease denotes SIV http://purl.obolibrary.org/obo/MONDO_0010029
T224 3429-3433 Disease denotes AIDS http://purl.obolibrary.org/obo/MONDO_0012268
T225 3658-3661 Disease denotes SIV http://purl.obolibrary.org/obo/MONDO_0010029
T226 3662-3671 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T227 4260-4266 Disease denotes HTLV-1 http://purl.obolibrary.org/obo/MONDO_0005801
T228 4329-4335 Disease denotes HTLV-1 http://purl.obolibrary.org/obo/MONDO_0005801
T229 4396-4402 Disease denotes HTLV-1 http://purl.obolibrary.org/obo/MONDO_0005801
T230 4440-4462 Disease denotes adult T-cell leukaemia http://purl.obolibrary.org/obo/MONDO_0019471
T231 4491-4518 Disease denotes disorder of the spinal cord http://purl.obolibrary.org/obo/MONDO_0002545
T232 4941-4947 Disease denotes HTLV-1 http://purl.obolibrary.org/obo/MONDO_0005801
T233 4997-5006 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T234 5076-5085 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T235 5106-5110 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T236 5234-5242 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T237 5234-5238 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T238 5360-5368 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T239 5360-5364 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T240 5371-5380 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T241 5645-5653 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T242 5645-5649 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T243 5911-5919 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T244 5911-5915 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T245 6195-6203 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T246 6195-6199 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T247 6376-6384 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T248 6376-6380 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T249 6562-6570 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T250 6562-6566 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T251 6632-6640 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T252 6632-6636 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T253 6678-6686 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T254 6678-6682 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T255 7035-7055 Disease denotes respiratory diseases http://purl.obolibrary.org/obo/MONDO_0005087
T256 7236-7244 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T257 7236-7240 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T258 7249-7257 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T259 7249-7253 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T260 7263-7271 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T261 7263-7267 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T262 7272-7280 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T263 7272-7276 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T264 7623-7631 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T265 7623-7627 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T266 7687-7695 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T267 7687-7691 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T268 8387-8408 Disease denotes respiratory infection http://purl.obolibrary.org/obo/MONDO_0024355
T269 8399-8408 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T270 8444-8448 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T271 8491-8500 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T272 8507-8528 Disease denotes respiratory infection http://purl.obolibrary.org/obo/MONDO_0024355
T273 8519-8528 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T274 8570-8574 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T275 8595-8621 Disease denotes Gastrointestinal infection http://purl.obolibrary.org/obo/MONDO_0043424
T276 8612-8621 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T272 44-51 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T273 118-123 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T274 194-195 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T275 338-339 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T276 642-649 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T277 731-737 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T278 1001-1008 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T279 1012-1018 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T280 1128-1131 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T281 1302-1309 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T282 1351-1356 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T283 1357-1365 http://purl.obolibrary.org/obo/NCBITaxon_9443 denotes primates
T284 1420-1421 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T285 1453-1454 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T286 1455-1465 http://purl.obolibrary.org/obo/NCBITaxon_9598 denotes chimpanzee
T287 1568-1579 http://purl.obolibrary.org/obo/NCBITaxon_9596 denotes chimpanzees
T288 1583-1589 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T289 1636-1643 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T290 1675-1681 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T291 1690-1691 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T292 1734-1735 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T293 1826-1834 http://purl.obolibrary.org/obo/CLO_0054061 denotes 13 and 2
T294 1910-1916 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T295 1942-1943 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T296 1948-1949 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T297 2165-2172 http://purl.obolibrary.org/obo/NCBITaxon_9443 denotes primate
T298 2176-2181 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T299 2409-2410 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T300 2429-2435 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T301 3079-3089 http://purl.obolibrary.org/obo/CLO_0001658 denotes activation
T302 3126-3127 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T303 3153-3160 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T304 3330-3336 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T305 3497-3503 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T306 3507-3513 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T307 3675-3681 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T308 3735-3740 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T309 3874-3875 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T310 3911-3912 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T311 3962-3967 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T312 4060-4066 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T313 4068-4070 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T314 4092-4097 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T315 4161-4163 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T316 4197-4202 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T317 4222-4227 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T318 4243-4250 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T319 4410-4411 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T320 4446-4452 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T321 4507-4518 http://purl.obolibrary.org/obo/UBERON_0002240 denotes spinal cord
T322 4532-4537 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T323 4595-4602 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T324 4628-4633 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T325 4634-4642 http://purl.obolibrary.org/obo/NCBITaxon_9443 denotes primates
T326 4719-4724 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T327 4725-4733 http://purl.obolibrary.org/obo/NCBITaxon_9443 denotes primates
T328 4842-4843 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T329 4865-4873 http://purl.obolibrary.org/obo/NCBITaxon_9443 denotes primates
T330 4929-4935 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T331 5045-5046 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T332 5089-5095 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T333 5391-5396 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T334 5400-5405 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T335 5656-5659 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T336 5760-5765 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T337 6058-6064 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T338 6068-6073 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T339 6107-6108 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T340 6109-6114 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T341 6167-6173 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T342 6267-6272 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T343 6288-6293 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T344 6319-6324 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T345 6423-6429 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T346 6598-6601 http://purl.obolibrary.org/obo/CLO_0001302 denotes 3–4
T347 6713-6719 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T348 6894-6900 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T349 6996-7002 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T350 7137-7140 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T351 7195-7201 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T352 7283-7288 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Virus
T353 7306-7310 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T354 7428-7432 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T355 7575-7580 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T356 7638-7643 http://purl.obolibrary.org/obo/CLO_0007836 denotes Mouse
T357 7715-7720 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T358 7736-7742 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T359 7764-7768 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T360 7806-7808 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T361 7810-7815 http://purl.obolibrary.org/obo/CLO_0007836 denotes Mouse
T362 7856-7858 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T363 7860-7865 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T364 7869-7874 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T365 8487-8490 http://www.ebi.ac.uk/efo/EFO_0000302 denotes CNS
T366 8487-8490 http://www.ebi.ac.uk/efo/EFO_0000908 denotes CNS
T367 8487-8490 http://purl.obolibrary.org/obo/UBERON_0001017 denotes CNS
T368 8530-8532 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T369 8591-8593 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T370 8789-8791 http://purl.obolibrary.org/obo/CLO_0001236 denotes 2a
T371 8937-8947 http://purl.obolibrary.org/obo/CLO_0001658 denotes activators

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T47 133-142 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T48 1396-1401 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T49 2558-2568 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T50 3098-3107 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T51 3852-3861 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T52 4132-4139 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T53 4358-4368 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T54 8633-8641 Chemical denotes carriers http://purl.obolibrary.org/obo/CHEBI_78059
T55 8813-8824 Chemical denotes antagonists http://purl.obolibrary.org/obo/CHEBI_48706
T56 8865-8873 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T57 8914-8922 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T58 8968-8976 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T59 8996-9004 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T161 0-17 Sentence denotes Lessons from HIVs
T162 18-151 Sentence denotes HIVs are the most studied viruses in history and the best model to understand the interplay between virus and host antiviral defence.
T163 152-286 Sentence denotes Tracing the origins of HIVs would provide a framework for us to understand cross-species transmission and pathogenicity of SARS-CoV-2.
T164 287-411 Sentence denotes The comparison of SARS-CoV-2 and HIVs would reveal a common theme and the requirements for their successful species jumping.
T165 412-528 Sentence denotes In particular, lessons learnt from HIVs are highly relevant and instructive to SARS-CoV-2 for the following reasons.
T166 529-584 Sentence denotes First, both HIVs and SARS-CoV-2 are of zoonotic origin.
T167 585-704 Sentence denotes Second, infection of their reservoir hosts with parental viruses of HIVs and SARS-CoV-2 results in no or mild symptoms.
T168 705-779 Sentence denotes However, when they infect humans, much more severe symptoms are developed.
T169 780-891 Sentence denotes Third, the similarities and differences between HIV-1 and HIV-2 resemble those between SARS-CoV and SARS-CoV-2.
T170 892-1019 Sentence denotes Finally, both HIVs and SARS-CoV-2 are plausibly derived from discrete cross-species transmission events from animals to humans.
T171 1020-1181 Sentence denotes Thus, we will briefly review our current understanding of the origins of HIVs and how host anti-HIV defence has shaped the emergence of the pandemic HIV strains.
T172 1182-1366 Sentence denotes There is persuasive evidence that HIVs are derived from multiple cross-species transmissions of simian immunodeficiency viruses (SIVs) that naturally infect African non-human primates.
T173 1367-1519 Sentence denotes The pandemic HIV-1 strain of group M originated from a single transmission event from a chimpanzee that harbours SIVcpz near Cameroon in Central Africa.
T174 1520-1712 Sentence denotes Multiple other transmission events of SIVs from chimpanzees to humans were also detected, but their resulting HIV-1 viruses in groups N, O and P spread in humans only to a limited extent [44].
T175 1713-1791 Sentence denotes Group O was found in a few tens of thousands of people in West-Central Africa.
T176 1792-1861 Sentence denotes Groups N and P were identified in 13 and 2 individuals, respectively.
T177 1862-2048 Sentence denotes Likewise, appreciable spreading of HIV-2 within humans is seen only with groups A and B resulting from two cross-species transmissions of SIVsmm from sooty mangabeys in West Africa [44].
T178 2049-2110 Sentence denotes All other groups (C–H) were found only in single individuals.
T179 2111-2202 Sentence denotes Thus, both HIV-1 and HIV-2 originated from one or two primate-to-human transmission events.
T180 2203-2334 Sentence denotes The other transmission events were unproductive, representing incidents in which secondary and tertiary spreading was very limited.
T181 2335-2528 Sentence denotes SIVs are non-pathogenic in their natural hosts, but their transmission to a new host, such as humans for HIV-1 and HIV-2 as well as macaques for SIVmac, enable them to become highly pathogenic.
T182 2529-2587 Sentence denotes HIV-1 and HIV-2 share 40–60% nucleotide sequence homology.
T183 2588-2694 Sentence denotes The transmission rate of HIV-2 is lower because the viral load is generally lower in infected individuals.
T184 2695-2772 Sentence denotes The natural history of HIV-2 infection is quite different from that of HIV-1.
T185 2773-2950 Sentence denotes Although clinical symptoms of acquired immunodeficiency syndrome (AIDS) caused by HIV-1 and HIV-2 are indistinguishable, most people infected with HIV-2 do not progress to AIDS.
T186 2951-3194 Sentence denotes One strong predictor of disease progression that distinguishes pathogenic HIV infection and non-pathogenic SIV infection is the activation of host antiviral defence including a prominent stimulation of T cells in the former but not the latter.
T187 3195-3297 Sentence denotes Another possibility is that the natural hosts of SIVs might be the survivors of ancient SIV pandemics.
T188 3298-3412 Sentence denotes One prediction is that HIVs and humans will eventually adapt to each other just like SIVs and their natural hosts.
T189 3413-3536 Sentence denotes In this regard, AIDS might be considered an accident in which HIVs fail to adapt to humans or humans fail to adapt to HIVs.
T190 3537-3682 Sentence denotes In support of this view, species-specific features in host restriction factors, such as TRIM5α and tetherin, can prevent SIV infection of humans.
T191 3683-3897 Sentence denotes On the other hand, adaptive mutations and accessory genes such as Vpu, Nef, and Vif in HIVs have been found to counteract host restriction factors, which constitute the antiviral defence, in a host-specific manner.
T192 3898-4072 Sentence denotes For example, a five-codon deletion in the cytoplasmic domain of human restriction factor tetherin results in the prevention of its interaction with SIVcpz Nef in humans [45].
T193 4073-4165 Sentence denotes On the side of the virus, some HIV-1 strains use their Vpu protein to degrade tetherin [45].
T194 4166-4328 Sentence denotes The origins of another pair of human retroviruses named human T lymphotropic viruses 1 and 2 (HTLV-1 and HTLV-2) are also very similar and relevant to HCoVs [46].
T195 4329-4387 Sentence denotes HTLV-1 and HTLV-2 share ∼70% nucleotide sequence homology.
T196 4388-4589 Sentence denotes Whereas HTLV-1 causes a highly lethal disease named adult T-cell leukaemia and another immune-mediated disorder of the spinal cord, the related virus HTLV-2 is largely non-pathogenic and non-oncogenic.
T197 4590-4739 Sentence denotes Both viruses have counterparts in non-human primates and so are HTLV-3 and HTLV-4 newly discovered in Cameroonian hunters of non-human primates [47].
T198 4740-4874 Sentence denotes At least four cross-species transmission events of HTLVs have been identified, each of which involves a different species of primates.
T199 4875-4992 Sentence denotes The spreading of HTLV-3 and HTLV-4 is very limited in humans, but HTLV-1 and HTLV-2 have infected millions of people.
T200 4993-5096 Sentence denotes The infection of T lymphocytes with HTLV-2 provides a good example of asymptomatic infection in humans.
T201 5097-5178 Sentence denotes HIVs and SARS-CoVs bear many similarities in terms of cross-species transmission.
T202 5179-5290 Sentence denotes It is difficult to predict how the ongoing outbreak of SARS-CoV-2 might develop in the coming weeks and months.
T203 5291-5462 Sentence denotes Unprecedented measures have now been taken to isolate the sources of SARS-CoV-2 infection, to block human-to-human transmission and to protect the susceptible individuals.
T204 5463-5600 Sentence denotes It remains to be seen whether and to what extent secondary and tertiary spreading will be weakened and prevented by the control measures.
T205 5601-5791 Sentence denotes Apparently, the intrafamily transmission of SARS-CoV-2 has not been stopped in the epicentre of Wuhan after 23 January 2020, when the city was locked down and human gathering was prohibited.
T206 5792-5922 Sentence denotes It also remains to be determined what percentage of the general population in Wuhan have been or are being infected by SARS-CoV-2.
T207 5923-5993 Sentence denotes These are important research questions that should be set as priority.
T208 5994-6174 Sentence denotes However, as seen in HIV-1, HIV-2, HTLV-3, and HTLV-4, not every animal-to-human transmission event gives rise to a virus that is highly and sustainably transmissible within humans.
T209 6175-6347 Sentence denotes The transmission of SARS-CoV-2 might be stopped due to the intrinsic characteristics of the virus, the action of human restriction factors, and human intervention measures.
T210 6348-6480 Sentence denotes Another possibility is that SARS-CoV-2 becomes highly transmissible within humans just like the other four community-acquired HCoVs.
T211 6481-6651 Sentence denotes Some estimates of the transmission rate expressed as reproductive number (R0) of SARS-CoV-2 fall within the range of 3–4, which is higher than that of SARS-CoV (Table 1).
T212 6652-6731 Sentence denotes If that can be sustained, SARS-CoV-2 will be well adapted to humans ultimately.
T213 6732-6827 Sentence denotes It will be fortunate if it also becomes less pathogenic, resembling 229E, OC43, HKU1, and NL63.
T214 6828-7056 Sentence denotes Plausibly, when they initially crossed species barriers to infect humans decades or centuries ago, 229E, OC43, HKU1, and NL63 might have also caused pandemics in which humans were suffering from more severe respiratory diseases.
T215 7057-7207 Sentence denotes As mentioned above, one such pandemic recorded at the end of nineteenth century has now been linked to the jumping of OC43 from cattle to humans [26].
T216 7208-7216 Sentence denotes Table 1.
T217 7217-7260 Sentence denotes Comparison between SARS-CoV and SARS-CoV-2.
T218 7261-7282 Sentence denotes   SARS-CoV SARS-CoV-2
T219 7283-7341 Sentence denotes Virus origin Horseshoe bats as evolutionary reservoir host
T220 7342-7380 Sentence denotes Civets as intermediate amplifying host
T221 7381-7407 Sentence denotes Unknown reservoir host(s)?
T222 7408-7463 Sentence denotes Rhinolophus affinis bats as evolutionary reservoir host
T223 7464-7504 Sentence denotes Unknown intermediate amplifying host(s)?
T224 7505-7531 Sentence denotes Unknown reservoir host(s)?
T225 7532-7569 Sentence denotes Entry receptor ACE2 as entry receptor
T226 7570-7637 Sentence denotes Both human ACE2 and civet ACE2 capable of supporting SARS-CoV entry
T227 7638-7809 Sentence denotes Mouse ACE2 less efficient in supporting entry of SARS-CoV when compared with human ACE2 ACE2 from humans, Rhinolophus sinicus bats, civets and swine as entry receptor [35]
T228 7810-7859 Sentence denotes Mouse ACE2 unable to serve as entry receptor [35]
T229 7860-7916 Sentence denotes Human-to-human transmission route Droplets in most cases
T230 7917-7956 Sentence denotes Close contact with contaminated fomites
T231 7957-7968 Sentence denotes Faecal–oral
T232 7969-8050 Sentence denotes Aerosols uncommon but possible under special circumstances Droplets in most cases
T233 8051-8090 Sentence denotes Close contact with contaminated fomites
T234 8091-8102 Sentence denotes Faecal–oral
T235 8103-8161 Sentence denotes Aerosols uncommon but possible under special circumstances
T236 8162-8203 Sentence denotes Higher attack rate within family clusters
T237 8204-8357 Sentence denotes Superspreading events Superspreading events detected in Hong Kong and Beijing [8] Superspreading events suspected as in the Diamond Princess cruise ship.
T238 8358-8408 Sentence denotes Clinical presentations Lower respiratory infection
T239 8409-8443 Sentence denotes ICU care required in ∼30% patients
T240 8444-8465 Sentence denotes ARDS in ∼20% patients
T241 8466-8533 Sentence denotes Gastrointestinal and CNS infection Lower respiratory infection [36]
T242 8534-8569 Sentence denotes ICU care required in 5–10% patients
T243 8570-8594 Sentence denotes ARDS in 5% patients [36]
T244 8595-8621 Sentence denotes Gastrointestinal infection
T245 8622-8646 Sentence denotes Asymptotic carriers [51]
T246 8647-8766 Sentence denotes Case fatality 9.6% worldwide 3.4% worldwide as of 24 February 2020 (4.0% in Hubei Province, China, and 0.84% elsewhere)
T247 8767-8801 Sentence denotes Transmissibility R0 = 2a R0 = 3–4b
T248 8802-8923 Sentence denotes Interferon antagonists nsp1, nsp3, nsp16, ORF3b, ORF6, M and N proteins nsp1, nsp3, nsp16, ORF3b, ORF6, M and N proteins?
T249 8924-9005 Sentence denotes Inflammasome activators ORF3a, ORF8b, and E proteins ORF3a, ORF8, and E proteins?
T250 9006-9084 Sentence denotes aR0 is <1 for tertiary and quaternary spreading as well as in the later phase.
T251 9085-9218 Sentence denotes bIt remains to be seen as to whether R0 will substantially reduce in tertiary and quaternary spreading as well as in the later phase.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T21 1285-1301 Phenotype denotes immunodeficiency http://purl.obolibrary.org/obo/HP_0002721
T22 2812-2828 Phenotype denotes immunodeficiency http://purl.obolibrary.org/obo/HP_0002721
T23 4453-4462 Phenotype denotes leukaemia http://purl.obolibrary.org/obo/HP_0001909
T24 8387-8408 Phenotype denotes respiratory infection http://purl.obolibrary.org/obo/HP_0011947
T25 8507-8528 Phenotype denotes respiratory infection http://purl.obolibrary.org/obo/HP_0011947
T26 8595-8621 Phenotype denotes Gastrointestinal infection http://purl.obolibrary.org/obo/HP_0004798

2_test

Id Subject Object Predicate Lexical cue
32172672-22229120-27782243 1708-1710 22229120 denotes 44
32172672-22229120-27782244 2044-2046 22229120 denotes 44
32172672-31447307-27782245 4068-4070 31447307 denotes 45
32172672-31447307-27782246 4161-4163 31447307 denotes 45
32172672-29052136-27782247 4324-4326 29052136 denotes 46
32172672-15650185-27782248 7203-7205 15650185 denotes 26
32172672-21737332-27782249 8283-8284 21737332 denotes 8
32172672-31986264-27782250 8530-8532 31986264 denotes 36
32172672-31986264-27782251 8591-8593 31986264 denotes 36

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
569 13-17 Disease denotes HIVs
592 275-285 Species denotes SARS-CoV-2 Tax:2697049
593 305-315 Species denotes SARS-CoV-2 Tax:2697049
594 491-501 Species denotes SARS-CoV-2 Tax:2697049
595 550-560 Species denotes SARS-CoV-2 Tax:2697049
596 662-672 Species denotes SARS-CoV-2 Tax:2697049
597 731-737 Species denotes humans Tax:9606
598 828-833 Species denotes HIV-1 Tax:11676
599 838-843 Species denotes HIV-2 Tax:11709
600 867-875 Species denotes SARS-CoV Tax:694009
601 880-890 Species denotes SARS-CoV-2 Tax:2697049
602 915-925 Species denotes SARS-CoV-2 Tax:2697049
603 1012-1018 Species denotes humans Tax:9606
604 18-22 Disease denotes HIVs
605 175-179 Disease denotes HIVs
606 320-324 Disease denotes HIVs
607 447-451 Disease denotes HIVs
608 541-545 Disease denotes HIVs
609 568-576 Disease denotes zoonotic MESH:D015047
610 593-602 Disease denotes infection MESH:D007239
611 653-657 Disease denotes HIVs
612 906-910 Disease denotes HIVs
613 1093-1097 Disease denotes HIVs
633 1278-1309 Species denotes simian immunodeficiency viruses Tax:11723
634 1351-1356 Species denotes human Tax:9606
635 1380-1385 Species denotes HIV-1 Tax:11676
636 1455-1465 Species denotes chimpanzee Tax:9598
637 1568-1579 Species denotes chimpanzees Tax:9598
638 1583-1589 Species denotes humans Tax:9606
639 1630-1635 Species denotes HIV-1 Tax:11676
640 1675-1681 Species denotes humans Tax:9606
641 1761-1767 Species denotes people Tax:9606
642 1897-1902 Species denotes HIV-2 Tax:11709
643 1910-1916 Species denotes humans Tax:9606
644 2012-2027 Species denotes sooty mangabeys Tax:9531
645 2122-2127 Species denotes HIV-1 Tax:11676
646 2132-2137 Species denotes HIV-2 Tax:11709
647 2176-2181 Species denotes human Tax:9606
648 1339-1346 Species denotes African Tax:9534
649 1311-1315 Species denotes SIVs Tax:11723
650 1558-1562 Species denotes SIVs Tax:11723
651 1216-1220 Disease denotes HIVs
694 3625-3631 Gene denotes TRIM5α Gene:85363
695 3636-3644 Gene denotes tetherin Gene:684
696 3754-3757 Gene denotes Nef Gene:6285
697 3987-3995 Gene denotes tetherin Gene:684
698 4053-4056 Gene denotes Nef Gene:6285
699 4151-4159 Gene denotes tetherin Gene:684
700 2429-2435 Species denotes humans Tax:9606
701 2440-2445 Species denotes HIV-1 Tax:11676
702 2450-2455 Species denotes HIV-2 Tax:11709
703 2480-2486 Species denotes SIVmac Tax:11723
704 2529-2534 Species denotes HIV-1 Tax:11676
705 2539-2544 Species denotes HIV-2 Tax:11709
706 2613-2618 Species denotes HIV-2 Tax:11709
707 2766-2771 Species denotes HIV-1 Tax:11676
708 2855-2860 Species denotes HIV-1 Tax:11676
709 2865-2870 Species denotes HIV-2 Tax:11709
710 2899-2905 Species denotes people Tax:9606
711 2920-2925 Species denotes HIV-2 Tax:11709
712 3330-3336 Species denotes humans Tax:9606
713 3497-3503 Species denotes humans Tax:9606
714 3507-3513 Species denotes humans Tax:9606
715 3675-3681 Species denotes humans Tax:9606
716 3962-3967 Species denotes human Tax:9606
717 4060-4066 Species denotes humans Tax:9606
718 4104-4109 Species denotes HIV-1 Tax:11676
719 2335-2339 Species denotes SIVs Tax:11723
720 3244-3248 Species denotes SIVs Tax:11723
721 3383-3387 Species denotes SIVs Tax:11723
722 2673-2681 Disease denotes infected MESH:D007239
723 2718-2733 Disease denotes HIV-2 infection MESH:D015658
724 2803-2837 Disease denotes acquired immunodeficiency syndrome MESH:D000163
725 2839-2843 Disease denotes AIDS MESH:D000163
726 2906-2914 Disease denotes infected MESH:D007239
727 2945-2949 Disease denotes AIDS MESH:D000163
728 3025-3038 Disease denotes HIV infection MESH:D015658
729 3058-3071 Disease denotes SIV infection MESH:D012857
730 3321-3325 Disease denotes HIVs
731 3429-3433 Disease denotes AIDS MESH:D000163
732 3475-3479 Disease denotes HIVs
733 3531-3535 Disease denotes HIVs
734 3658-3671 Disease denotes SIV infection MESH:D012857
735 3770-3774 Disease denotes HIVs
760 4197-4202 Species denotes human Tax:9606
761 4222-4227 Species denotes human Tax:9606
762 4260-4266 Species denotes HTLV-1 Tax:11908
763 4271-4277 Species denotes HTLV-2 Tax:11909
764 4329-4335 Species denotes HTLV-1 Tax:11908
765 4340-4346 Species denotes HTLV-2 Tax:11909
766 4396-4402 Species denotes HTLV-1 Tax:11908
767 4538-4544 Species denotes HTLV-2 Tax:11909
768 4628-4633 Species denotes human Tax:9606
769 4654-4660 Species denotes HTLV-3 Tax:28332
770 4665-4671 Species denotes HTLV-4 Tax:11725
771 4719-4724 Species denotes human Tax:9606
772 4892-4898 Species denotes HTLV-3 Tax:28332
773 4903-4909 Species denotes HTLV-4 Tax:11725
774 4929-4935 Species denotes humans Tax:9606
775 4941-4947 Species denotes HTLV-1 Tax:11908
776 4952-4958 Species denotes HTLV-2 Tax:11909
777 4985-4991 Species denotes people Tax:9606
778 5029-5035 Species denotes HTLV-2 Tax:11909
779 5089-5095 Species denotes humans Tax:9606
780 4440-4462 Disease denotes adult T-cell leukaemia MESH:D015459
781 4964-4972 Disease denotes infected MESH:D007239
782 4997-5006 Disease denotes infection MESH:D007239
783 5076-5085 Disease denotes infection MESH:D007239
811 7547-7551 Gene denotes ACE2 Gene:59272
812 7581-7585 Gene denotes ACE2 Gene:59272
813 7596-7600 Gene denotes ACE2 Gene:59272
814 7644-7648 Gene denotes ACE2 Gene:59272
815 7721-7725 Gene denotes ACE2 Gene:59272
816 7726-7730 Gene denotes ACE2 Gene:59272
817 7816-7820 Gene denotes ACE2 Gene:70008
818 8825-8829 Gene denotes nsp1 Gene:10045
819 8874-8878 Gene denotes nsp1 Gene:10045
820 7263-7271 Species denotes SARS-CoV Tax:694009
821 7272-7282 Species denotes SARS-CoV-2 Tax:2697049
822 7296-7310 Species denotes Horseshoe bats Tax:49442
823 7408-7427 Species denotes Rhinolophus affinis Tax:59477
824 7575-7580 Species denotes human Tax:9606
825 7623-7631 Species denotes SARS-CoV Tax:694009
826 7687-7695 Species denotes SARS-CoV Tax:694009
827 7715-7720 Species denotes human Tax:9606
828 7736-7742 Species denotes humans Tax:9606
829 7744-7763 Species denotes Rhinolophus sinicus Tax:89399
830 7781-7786 Species denotes swine Tax:9823
831 7810-7815 Species denotes Mouse Tax:10090
832 7860-7865 Species denotes Human Tax:9606
833 7869-7874 Species denotes human Tax:9606
834 8581-8589 Species denotes patients Tax:9606
835 8387-8412 Disease denotes respiratory infection ICU MESH:D012131
836 8491-8500 Disease denotes infection MESH:D007239
837 8507-8528 Disease denotes respiratory infection MESH:D012141
840 7236-7244 Species denotes SARS-CoV Tax:694009
841 7249-7259 Species denotes SARS-CoV-2 Tax:2697049
874 5106-5115 Species denotes SARS-CoVs Tax:694009
875 5234-5244 Species denotes SARS-CoV-2 Tax:2697049
876 5391-5396 Species denotes human Tax:9606
877 5400-5405 Species denotes human Tax:9606
878 5645-5655 Species denotes SARS-CoV-2 Tax:2697049
879 5760-5765 Species denotes human Tax:9606
880 5911-5921 Species denotes SARS-CoV-2 Tax:2697049
881 6014-6019 Species denotes HIV-1 Tax:11676
882 6021-6026 Species denotes HIV-2 Tax:11709
883 6028-6034 Species denotes HTLV-3 Tax:28332
884 6040-6046 Species denotes HTLV-4 Tax:11725
885 6068-6073 Species denotes human Tax:9606
886 6167-6173 Species denotes humans Tax:9606
887 6195-6205 Species denotes SARS-CoV-2 Tax:2697049
888 6288-6293 Species denotes human Tax:9606
889 6319-6324 Species denotes human Tax:9606
890 6376-6386 Species denotes SARS-CoV-2 Tax:2697049
891 6423-6429 Species denotes humans Tax:9606
892 6562-6572 Species denotes SARS-CoV-2 Tax:2697049
893 6632-6640 Species denotes SARS-CoV Tax:694009
894 6678-6688 Species denotes SARS-CoV-2 Tax:2697049
895 6713-6719 Species denotes humans Tax:9606
896 6894-6900 Species denotes humans Tax:9606
897 6996-7002 Species denotes humans Tax:9606
898 7185-7191 Species denotes cattle Tax:9913
899 7195-7201 Species denotes humans Tax:9606
900 6822-6826 Species denotes NL63 Tax:277944
901 6949-6953 Species denotes NL63 Tax:277944
902 5097-5101 Disease denotes HIVs
903 5360-5380 Disease denotes SARS-CoV-2 infection MESH:C000657245
904 5899-5907 Disease denotes infected MESH:D007239
905 7035-7055 Disease denotes respiratory diseases MESH:D012140

MyTest

Id Subject Object Predicate Lexical cue
32172672-22229120-27782243 1708-1710 22229120 denotes 44
32172672-22229120-27782244 2044-2046 22229120 denotes 44
32172672-31447307-27782245 4068-4070 31447307 denotes 45
32172672-31447307-27782246 4161-4163 31447307 denotes 45
32172672-29052136-27782247 4324-4326 29052136 denotes 46
32172672-15650185-27782248 7203-7205 15650185 denotes 26
32172672-21737332-27782249 8283-8284 21737332 denotes 8
32172672-31986264-27782250 8530-8532 31986264 denotes 36
32172672-31986264-27782251 8591-8593 31986264 denotes 36