PMC:7103724 / 2800-4167
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T7 | 352-369 | Body_part | denotes | respiratory tract | http://purl.org/sig/ont/fma/fma265130 |
| T8 | 388-394 | Body_part | denotes | sputum | http://purl.org/sig/ont/fma/fma312401 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T6 | 352-369 | Body_part | denotes | respiratory tract | http://purl.obolibrary.org/obo/UBERON_0000065 |
| T7 | 388-394 | Body_part | denotes | sputum | http://purl.obolibrary.org/obo/UBERON_0007311 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T13 | 148-158 | Disease | denotes | Infectious | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T14 | 220-228 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T15 | 476-485 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
| T16 | 487-502 | Disease | denotes | avian influenza | http://purl.obolibrary.org/obo/MONDO_0018695 |
| T17 | 493-502 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
| T18 | 566-587 | Disease | denotes | Mycoplasma pneumoniae | http://purl.obolibrary.org/obo/MONDO_0005867 |
| T19 | 592-601 | Disease | denotes | chlamydia | http://purl.obolibrary.org/obo/MONDO_0005701 |
| T20 | 700-708 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T21 | 1082-1091 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T10 | 0-1 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T11 | 58-63 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tests |
| T12 | 465-471 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tested |
| T13 | 526-531 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T14 | 559-564 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T15 | 670-675 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tests |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T2 | 194-206 | Chemical | denotes | nucleic acid | http://purl.obolibrary.org/obo/CHEBI_33696 |
| T3 | 202-206 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T4 | 722-734 | Chemical | denotes | nucleic acid | http://purl.obolibrary.org/obo/CHEBI_33696 |
| T5 | 730-734 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T6 | 1093-1105 | Chemical | denotes | nucleic acid | http://purl.obolibrary.org/obo/CHEBI_33696 |
| T7 | 1101-1105 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T29 | 0-272 | Sentence | denotes | A retrospective review was conducted of the clinical, lab tests, and radiologic findings for nine children and their families admitted to the Jinan Infectious Diseases Hospital identified to be nucleic acid-positive for SARS-CoV-2 from 24 January 2020 to 24 February 2020. |
| T30 | 273-676 | Sentence | denotes | Sample collection and pathogen identification after admission to the hospital, respiratory tract samples including sputum and nasopharyngeal swabs were collected from the patients, which were tested for influenza, avian influenza, respiratory syncytial virus, adenovirus, parainfluenza virus, Mycoplasma pneumoniae and chlamydia, along with routine bacterial, fungal, and pathogenic microorganism tests. |
| T31 | 677-824 | Sentence | denotes | Real-time PCR used the SARS-CoV-2 (ORF1ab/N) nucleic acid detection kit (Bio-germ, Shanghai, China) and performed refer to previous literature [3]. |
| T32 | 825-1367 | Sentence | denotes | All the patients were recorded with basic information and epidemiological histories [4] including (1) History of travel or residence in Wuhan and surrounding areas or other reported cases within 14 days of onset; (2) History of contact with new coronavirus infection (nucleic acid-positive) 14 days before onset; (3) history of contact with patients with fever or respiratory symptoms from Wuhan and surrounding areas, or from communities with case reports within 14 days before onset; (4) Cluster onset, along with disease condition changes. |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T11 | 577-587 | Phenotype | denotes | pneumoniae | http://purl.obolibrary.org/obo/HP_0002090 |
| T12 | 1180-1185 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 88 | 712-718 | Gene | denotes | ORF1ab | Gene:43740578 |
| 89 | 719-720 | Gene | denotes | N | Gene:43740575 |
| 90 | 98-106 | Species | denotes | children | Tax:9606 |
| 91 | 220-230 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 92 | 444-452 | Species | denotes | patients | Tax:9606 |
| 93 | 504-531 | Species | denotes | respiratory syncytial virus | Tax:12814 |
| 94 | 533-543 | Species | denotes | adenovirus | Tax:10508 |
| 95 | 566-587 | Species | denotes | Mycoplasma pneumoniae | Tax:2104 |
| 96 | 700-710 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 97 | 833-841 | Species | denotes | patients | Tax:9606 |
| 98 | 1166-1174 | Species | denotes | patients | Tax:9606 |
| 99 | 352-363 | Species | denotes | respiratory | Tax:12814 |
| 100 | 476-485 | Species | denotes | influenza | Tax:11308 |
| 101 | 493-502 | Species | denotes | influenza | Tax:11308 |
| 102 | 148-167 | Disease | denotes | Infectious Diseases | MESH:D003141 |
| 103 | 1066-1091 | Disease | denotes | new coronavirus infection | MESH:C000657245 |
| 104 | 1180-1185 | Disease | denotes | fever | MESH:D005334 |
| 105 | 1189-1209 | Disease | denotes | respiratory symptoms | MESH:D012818 |