PMC:7103696 / 2997-4124
Annnotations
{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7103696","sourcedb":"PMC","sourceid":"7103696","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7103696","text":"When SARS-CoV-2 infects a person, the lesions are not limited to the lungs. The virus causes viraemia after entering the body and the main clinical manifestations are fever, pharyngalgia, fatigue, diarrhoea and other non-specific symptoms [3,4]. This process includes the incubation phase and the early phase of the disease. The incubation takes 1–14 days (3–7 days being common). Peripheral blood leucocytes and lymphocytes are not significantly reduced (normal or slightly lower) at this phase. Then, the viruses spread through the bloodstream and mainly in the lungs, gastrointestinal tract, and heart, presumably concentrated in the tissues expressing ACE2, the receptor of SARS-CoV-2. This phase occurs around 7–14 after the onset of the symptoms when the virus starts a second attack, which is also the main cause of the aggravation of symptoms. At this time, pulmonary lesions became worse, and chest CT scans show imaging changes consistent with COVID-19. At this stage, the peripheral blood lymphocytes decrease significantly, involving both T and B lymphocytes. Inflammatory factors in peripheral blood are increased.","tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T5","span":{"begin":69,"end":74},"obj":"Body_part"},{"id":"T6","span":{"begin":121,"end":125},"obj":"Body_part"},{"id":"T7","span":{"begin":392,"end":397},"obj":"Body_part"},{"id":"T8","span":{"begin":398,"end":408},"obj":"Body_part"},{"id":"T9","span":{"begin":413,"end":424},"obj":"Body_part"},{"id":"T10","span":{"begin":564,"end":569},"obj":"Body_part"},{"id":"T11","span":{"begin":571,"end":593},"obj":"Body_part"},{"id":"T12","span":{"begin":599,"end":604},"obj":"Body_part"},{"id":"T13","span":{"begin":637,"end":644},"obj":"Body_part"},{"id":"T14","span":{"begin":902,"end":907},"obj":"Body_part"},{"id":"T15","span":{"begin":994,"end":999},"obj":"Body_part"},{"id":"T16","span":{"begin":1000,"end":1011},"obj":"Body_part"},{"id":"T17","span":{"begin":1057,"end":1070},"obj":"Body_part"},{"id":"T18","span":{"begin":1107,"end":1112},"obj":"Body_part"}],"attributes":[{"id":"A5","pred":"fma_id","subj":"T5","obj":"http://purl.org/sig/ont/fma/fma68877"},{"id":"A6","pred":"fma_id","subj":"T6","obj":"http://purl.org/sig/ont/fma/fma256135"},{"id":"A7","pred":"fma_id","subj":"T7","obj":"http://purl.org/sig/ont/fma/fma9670"},{"id":"A8","pred":"fma_id","subj":"T8","obj":"http://purl.org/sig/ont/fma/fma62852"},{"id":"A9","pred":"fma_id","subj":"T9","obj":"http://purl.org/sig/ont/fma/fma62863"},{"id":"A10","pred":"fma_id","subj":"T10","obj":"http://purl.org/sig/ont/fma/fma68877"},{"id":"A11","pred":"fma_id","subj":"T11","obj":"http://purl.org/sig/ont/fma/fma71132"},{"id":"A12","pred":"fma_id","subj":"T12","obj":"http://purl.org/sig/ont/fma/fma7088"},{"id":"A13","pred":"fma_id","subj":"T13","obj":"http://purl.org/sig/ont/fma/fma9637"},{"id":"A14","pred":"fma_id","subj":"T14","obj":"http://purl.org/sig/ont/fma/fma9576"},{"id":"A15","pred":"fma_id","subj":"T15","obj":"http://purl.org/sig/ont/fma/fma9670"},{"id":"A16","pred":"fma_id","subj":"T16","obj":"http://purl.org/sig/ont/fma/fma62863"},{"id":"A17","pred":"fma_id","subj":"T17","obj":"http://purl.org/sig/ont/fma/fma62869"},{"id":"A18","pred":"fma_id","subj":"T18","obj":"http://purl.org/sig/ont/fma/fma9670"},{"subj":"T5","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T6","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T7","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T8","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T9","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T10","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T11","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T12","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T13","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T14","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T15","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T16","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T17","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T18","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T2","span":{"begin":392,"end":397},"obj":"Body_part"},{"id":"T3","span":{"begin":599,"end":604},"obj":"Body_part"},{"id":"T4","span":{"begin":902,"end":907},"obj":"Body_part"},{"id":"T5","span":{"begin":994,"end":999},"obj":"Body_part"},{"id":"T6","span":{"begin":1107,"end":1112},"obj":"Body_part"}],"attributes":[{"id":"A2","pred":"uberon_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/UBERON_0000178"},{"id":"A3","pred":"uberon_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/UBERON_0000948"},{"id":"A4","pred":"uberon_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/UBERON_0001443"},{"id":"A5","pred":"uberon_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/UBERON_0000178"},{"id":"A6","pred":"uberon_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/UBERON_0000178"},{"subj":"T2","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T3","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T4","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T5","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T6","pred":"source","obj":"LitCovid-PD-UBERON"}]},{"project":"LitCovid_AGAC","denotations":[{"id":"p58969s6","span":{"begin":1117,"end":1126},"obj":"PosReg"}],"attributes":[{"subj":"p58969s6","pred":"source","obj":"LitCovid_AGAC"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T20","span":{"begin":5,"end":13},"obj":"Disease"},{"id":"T21","span":{"begin":197,"end":206},"obj":"Disease"},{"id":"T22","span":{"begin":678,"end":686},"obj":"Disease"},{"id":"T23","span":{"begin":954,"end":962},"obj":"Disease"}],"attributes":[{"id":"A20","pred":"mondo_id","subj":"T20","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A21","pred":"mondo_id","subj":"T21","obj":"http://purl.obolibrary.org/obo/MONDO_0001673"},{"id":"A22","pred":"mondo_id","subj":"T22","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A23","pred":"mondo_id","subj":"T23","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"subj":"T20","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T21","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T22","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T23","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T16","span":{"begin":24,"end":25},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T17","span":{"begin":69,"end":74},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"},{"id":"T18","span":{"begin":80,"end":85},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T19","span":{"begin":346,"end":350},"obj":"http://purl.obolibrary.org/obo/CLO_0053001"},{"id":"T20","span":{"begin":392,"end":397},"obj":"http://purl.obolibrary.org/obo/UBERON_0000178"},{"id":"T21","span":{"begin":392,"end":397},"obj":"http://www.ebi.ac.uk/efo/EFO_0000296"},{"id":"T22","span":{"begin":398,"end":408},"obj":"http://purl.obolibrary.org/obo/CL_0000738"},{"id":"T23","span":{"begin":507,"end":514},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T24","span":{"begin":564,"end":569},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"},{"id":"T25","span":{"begin":571,"end":593},"obj":"http://purl.obolibrary.org/obo/UBERON_0005409"},{"id":"T26","span":{"begin":599,"end":604},"obj":"http://purl.obolibrary.org/obo/UBERON_0000948"},{"id":"T27","span":{"begin":599,"end":604},"obj":"http://purl.obolibrary.org/obo/UBERON_0007100"},{"id":"T28","span":{"begin":599,"end":604},"obj":"http://purl.obolibrary.org/obo/UBERON_0015228"},{"id":"T29","span":{"begin":599,"end":604},"obj":"http://www.ebi.ac.uk/efo/EFO_0000815"},{"id":"T30","span":{"begin":761,"end":766},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T31","span":{"begin":774,"end":775},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T32","span":{"begin":902,"end":907},"obj":"http://www.ebi.ac.uk/efo/EFO_0000965"},{"id":"T33","span":{"begin":994,"end":999},"obj":"http://purl.obolibrary.org/obo/UBERON_0000178"},{"id":"T34","span":{"begin":994,"end":999},"obj":"http://www.ebi.ac.uk/efo/EFO_0000296"},{"id":"T35","span":{"begin":1057,"end":1058},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T36","span":{"begin":1107,"end":1112},"obj":"http://purl.obolibrary.org/obo/UBERON_0000178"},{"id":"T37","span":{"begin":1107,"end":1112},"obj":"http://www.ebi.ac.uk/efo/EFO_0000296"}],"attributes":[{"subj":"T16","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T17","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T18","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T19","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T20","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T21","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T22","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T23","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T24","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T25","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T26","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T27","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T28","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T29","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T30","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T31","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T32","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T33","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T34","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T35","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T36","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T37","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T26","span":{"begin":0,"end":75},"obj":"Sentence"},{"id":"T27","span":{"begin":76,"end":245},"obj":"Sentence"},{"id":"T28","span":{"begin":246,"end":324},"obj":"Sentence"},{"id":"T29","span":{"begin":325,"end":380},"obj":"Sentence"},{"id":"T30","span":{"begin":381,"end":496},"obj":"Sentence"},{"id":"T31","span":{"begin":497,"end":689},"obj":"Sentence"},{"id":"T32","span":{"begin":690,"end":851},"obj":"Sentence"},{"id":"T33","span":{"begin":852,"end":963},"obj":"Sentence"},{"id":"T34","span":{"begin":964,"end":1071},"obj":"Sentence"},{"id":"T35","span":{"begin":1072,"end":1127},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T26","pred":"source","obj":"LitCovid-sentences"},{"subj":"T27","pred":"source","obj":"LitCovid-sentences"},{"subj":"T28","pred":"source","obj":"LitCovid-sentences"},{"subj":"T29","pred":"source","obj":"LitCovid-sentences"},{"subj":"T30","pred":"source","obj":"LitCovid-sentences"},{"subj":"T31","pred":"source","obj":"LitCovid-sentences"},{"subj":"T32","pred":"source","obj":"LitCovid-sentences"},{"subj":"T33","pred":"source","obj":"LitCovid-sentences"},{"subj":"T34","pred":"source","obj":"LitCovid-sentences"},{"subj":"T35","pred":"source","obj":"LitCovid-sentences"}]},{"project":"LitCovid-PD-HP","denotations":[{"id":"T2","span":{"begin":167,"end":172},"obj":"Phenotype"},{"id":"T3","span":{"begin":174,"end":186},"obj":"Phenotype"},{"id":"T4","span":{"begin":188,"end":195},"obj":"Phenotype"},{"id":"T5","span":{"begin":197,"end":206},"obj":"Phenotype"}],"attributes":[{"id":"A2","pred":"hp_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/HP_0001945"},{"id":"A3","pred":"hp_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/HP_0033050"},{"id":"A4","pred":"hp_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/HP_0012378"},{"id":"A5","pred":"hp_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/HP_0002014"},{"subj":"T2","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T3","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T4","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T5","pred":"source","obj":"LitCovid-PD-HP"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"80","span":{"begin":656,"end":660},"obj":"Gene"},{"id":"81","span":{"begin":5,"end":15},"obj":"Species"},{"id":"82","span":{"begin":678,"end":688},"obj":"Species"},{"id":"83","span":{"begin":93,"end":101},"obj":"Disease"},{"id":"84","span":{"begin":167,"end":172},"obj":"Disease"},{"id":"85","span":{"begin":174,"end":186},"obj":"Disease"},{"id":"86","span":{"begin":188,"end":195},"obj":"Disease"},{"id":"87","span":{"begin":197,"end":206},"obj":"Disease"},{"id":"88","span":{"begin":866,"end":883},"obj":"Disease"},{"id":"89","span":{"begin":954,"end":962},"obj":"Disease"}],"attributes":[{"id":"A80","pred":"tao:has_database_id","subj":"80","obj":"Gene:59272"},{"id":"A81","pred":"tao:has_database_id","subj":"81","obj":"Tax:2697049"},{"id":"A82","pred":"tao:has_database_id","subj":"82","obj":"Tax:2697049"},{"id":"A84","pred":"tao:has_database_id","subj":"84","obj":"MESH:D005334"},{"id":"A85","pred":"tao:has_database_id","subj":"85","obj":"MESH:D010608"},{"id":"A86","pred":"tao:has_database_id","subj":"86","obj":"MESH:D005221"},{"id":"A87","pred":"tao:has_database_id","subj":"87","obj":"MESH:D003967"},{"id":"A88","pred":"tao:has_database_id","subj":"88","obj":"MESH:D008171"},{"id":"A89","pred":"tao:has_database_id","subj":"89","obj":"MESH:C000657245"},{"subj":"80","pred":"source","obj":"LitCovid-PubTator"},{"subj":"81","pred":"source","obj":"LitCovid-PubTator"},{"subj":"82","pred":"source","obj":"LitCovid-PubTator"},{"subj":"83","pred":"source","obj":"LitCovid-PubTator"},{"subj":"84","pred":"source","obj":"LitCovid-PubTator"},{"subj":"85","pred":"source","obj":"LitCovid-PubTator"},{"subj":"86","pred":"source","obj":"LitCovid-PubTator"},{"subj":"87","pred":"source","obj":"LitCovid-PubTator"},{"subj":"88","pred":"source","obj":"LitCovid-PubTator"},{"subj":"89","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#c093ec","default":true},{"id":"LitCovid-PD-UBERON","color":"#93eca6"},{"id":"LitCovid_AGAC","color":"#ec9399"},{"id":"LitCovid-PD-MONDO","color":"#93b3ec"},{"id":"LitCovid-PD-CLO","color":"#cdec93"},{"id":"LitCovid-sentences","color":"#ec93e7"},{"id":"LitCovid-PD-HP","color":"#93ecd6"},{"id":"LitCovid-PubTator","color":"#ecbc93"}]}]}}