PMC:7103696 / 2969-4124
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T5 | 97-102 | Body_part | denotes | lungs | http://purl.org/sig/ont/fma/fma68877 |
| T6 | 149-153 | Body_part | denotes | body | http://purl.org/sig/ont/fma/fma256135 |
| T7 | 420-425 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
| T8 | 426-436 | Body_part | denotes | leucocytes | http://purl.org/sig/ont/fma/fma62852 |
| T9 | 441-452 | Body_part | denotes | lymphocytes | http://purl.org/sig/ont/fma/fma62863 |
| T10 | 592-597 | Body_part | denotes | lungs | http://purl.org/sig/ont/fma/fma68877 |
| T11 | 599-621 | Body_part | denotes | gastrointestinal tract | http://purl.org/sig/ont/fma/fma71132 |
| T12 | 627-632 | Body_part | denotes | heart | http://purl.org/sig/ont/fma/fma7088 |
| T13 | 665-672 | Body_part | denotes | tissues | http://purl.org/sig/ont/fma/fma9637 |
| T14 | 930-935 | Body_part | denotes | chest | http://purl.org/sig/ont/fma/fma9576 |
| T15 | 1022-1027 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
| T16 | 1028-1039 | Body_part | denotes | lymphocytes | http://purl.org/sig/ont/fma/fma62863 |
| T17 | 1085-1098 | Body_part | denotes | B lymphocytes | http://purl.org/sig/ont/fma/fma62869 |
| T18 | 1135-1140 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T2 | 420-425 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T3 | 627-632 | Body_part | denotes | heart | http://purl.obolibrary.org/obo/UBERON_0000948 |
| T4 | 930-935 | Body_part | denotes | chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
| T5 | 1022-1027 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T6 | 1135-1140 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
LitCovid_AGAC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| p58969s6 | 1145-1154 | PosReg | denotes | increased |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T19 | 19-27 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T20 | 33-41 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T21 | 225-234 | Disease | denotes | diarrhoea | http://purl.obolibrary.org/obo/MONDO_0001673 |
| T22 | 706-714 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T23 | 982-990 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16 | 52-53 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T17 | 97-102 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lungs |
| T18 | 108-113 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T19 | 374-378 | http://purl.obolibrary.org/obo/CLO_0053001 | denotes | 1–14 |
| T20 | 420-425 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
| T21 | 420-425 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
| T22 | 426-436 | http://purl.obolibrary.org/obo/CL_0000738 | denotes | leucocytes |
| T23 | 535-542 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
| T24 | 592-597 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lungs |
| T25 | 599-621 | http://purl.obolibrary.org/obo/UBERON_0005409 | denotes | gastrointestinal tract |
| T26 | 627-632 | http://purl.obolibrary.org/obo/UBERON_0000948 | denotes | heart |
| T27 | 627-632 | http://purl.obolibrary.org/obo/UBERON_0007100 | denotes | heart |
| T28 | 627-632 | http://purl.obolibrary.org/obo/UBERON_0015228 | denotes | heart |
| T29 | 627-632 | http://www.ebi.ac.uk/efo/EFO_0000815 | denotes | heart |
| T30 | 789-794 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T31 | 802-803 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T32 | 930-935 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | chest |
| T33 | 1022-1027 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
| T34 | 1022-1027 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
| T35 | 1085-1086 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T36 | 1135-1140 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
| T37 | 1135-1140 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T25 | 0-27 | Sentence | denotes | Clinical course of COVID-19 |
| T26 | 28-103 | Sentence | denotes | When SARS-CoV-2 infects a person, the lesions are not limited to the lungs. |
| T27 | 104-273 | Sentence | denotes | The virus causes viraemia after entering the body and the main clinical manifestations are fever, pharyngalgia, fatigue, diarrhoea and other non-specific symptoms [3,4]. |
| T28 | 274-352 | Sentence | denotes | This process includes the incubation phase and the early phase of the disease. |
| T29 | 353-408 | Sentence | denotes | The incubation takes 1–14 days (3–7 days being common). |
| T30 | 409-524 | Sentence | denotes | Peripheral blood leucocytes and lymphocytes are not significantly reduced (normal or slightly lower) at this phase. |
| T31 | 525-717 | Sentence | denotes | Then, the viruses spread through the bloodstream and mainly in the lungs, gastrointestinal tract, and heart, presumably concentrated in the tissues expressing ACE2, the receptor of SARS-CoV-2. |
| T32 | 718-879 | Sentence | denotes | This phase occurs around 7–14 after the onset of the symptoms when the virus starts a second attack, which is also the main cause of the aggravation of symptoms. |
| T33 | 880-991 | Sentence | denotes | At this time, pulmonary lesions became worse, and chest CT scans show imaging changes consistent with COVID-19. |
| T34 | 992-1099 | Sentence | denotes | At this stage, the peripheral blood lymphocytes decrease significantly, involving both T and B lymphocytes. |
| T35 | 1100-1155 | Sentence | denotes | Inflammatory factors in peripheral blood are increased. |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T2 | 195-200 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
| T3 | 202-214 | Phenotype | denotes | pharyngalgia | http://purl.obolibrary.org/obo/HP_0033050 |
| T4 | 216-223 | Phenotype | denotes | fatigue | http://purl.obolibrary.org/obo/HP_0012378 |
| T5 | 225-234 | Phenotype | denotes | diarrhoea | http://purl.obolibrary.org/obo/HP_0002014 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 69 | 19-27 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 80 | 684-688 | Gene | denotes | ACE2 | Gene:59272 |
| 81 | 33-43 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 82 | 706-716 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 83 | 121-129 | Disease | denotes | viraemia | |
| 84 | 195-200 | Disease | denotes | fever | MESH:D005334 |
| 85 | 202-214 | Disease | denotes | pharyngalgia | MESH:D010608 |
| 86 | 216-223 | Disease | denotes | fatigue | MESH:D005221 |
| 87 | 225-234 | Disease | denotes | diarrhoea | MESH:D003967 |
| 88 | 894-911 | Disease | denotes | pulmonary lesions | MESH:D008171 |
| 89 | 982-990 | Disease | denotes | COVID-19 | MESH:C000657245 |