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PMC:7102662 / 6321-8729 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T14 42-45 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T15 303-320 Body_part denotes respiratory tract http://purl.org/sig/ont/fma/fma265130
T16 359-368 Body_part denotes CV system http://purl.org/sig/ont/fma/fma7161
T17 554-559 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T18 675-680 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088
T19 685-690 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T20 751-760 Body_part denotes CV system http://purl.org/sig/ont/fma/fma7161
T21 939-943 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T22 1077-1085 Body_part denotes cytokine http://purl.org/sig/ont/fma/fma84050
T23 1232-1241 Body_part denotes cytokines http://purl.org/sig/ont/fma/fma84050
T24 1683-1688 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T25 2020-2029 Body_part denotes CV system http://purl.org/sig/ont/fma/fma7161

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T8 303-320 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T9 675-680 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948
T10 939-943 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T11 1132-1138 Body_part denotes organs http://purl.obolibrary.org/obo/UBERON_0000062
T12 1683-1688 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T61 0-8 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T62 131-141 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T63 256-260 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T64 283-291 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T65 347-355 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T66 485-493 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T67 522-528 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T68 530-538 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T69 835-843 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T70 944-950 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T71 971-983 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166
T72 1006-1014 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T73 1113-1119 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T74 1150-1168 Disease denotes multiorgan failure http://purl.obolibrary.org/obo/MONDO_0043726
T75 1275-1283 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T76 1397-1406 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T77 1549-1555 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T78 1580-1599 Disease denotes coronary thrombosis http://purl.obolibrary.org/obo/MONDO_0006716
T79 1589-1599 Disease denotes thrombosis http://purl.obolibrary.org/obo/MONDO_0000831
T80 1610-1622 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166
T81 1738-1765 Disease denotes acute myocardial infarction http://purl.obolibrary.org/obo/MONDO_0004781
T82 1744-1765 Disease denotes myocardial infarction http://purl.obolibrary.org/obo/MONDO_0005068
T83 1808-1820 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166
T84 1970-1978 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T85 2141-2152 Disease denotes arrhythmias http://purl.obolibrary.org/obo/MONDO_0007263
T86 2239-2250 Disease denotes hypokalemia http://purl.obolibrary.org/obo/MONDO_0003019
T87 2254-2262 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T88 2286-2294 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T89 2344-2355 Disease denotes Hypokalemia http://purl.obolibrary.org/obo/MONDO_0003019

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T36 24-25 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T37 125-130 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T38 359-368 http://purl.obolibrary.org/obo/UBERON_0004535 denotes CV system
T39 548-559 http://purl.obolibrary.org/obo/CLO_0053065 denotes human cells
T40 614-615 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T41 616-624 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T42 675-680 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T43 675-680 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T44 675-680 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T45 675-680 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T46 685-690 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T47 751-760 http://purl.obolibrary.org/obo/UBERON_0004535 denotes CV system
T48 887-896 http://purl.obolibrary.org/obo/SO_0000418 denotes signaling
T49 939-943 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T50 939-943 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T51 1132-1138 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organs
T52 1683-1688 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T53 1683-1688 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T54 2020-2029 http://purl.obolibrary.org/obo/UBERON_0004535 denotes CV system

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T5 46-50 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T6 87-91 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T7 574-585 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433
T8 1486-1492 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T9 1899-1914 Chemical denotes antiviral drugs http://purl.obolibrary.org/obo/CHEBI_36044
T10 1899-1908 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T11 1909-1914 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T12 1916-1931 Chemical denotes corticosteroids http://purl.obolibrary.org/obo/CHEBI_50858
T13 2308-2319 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433
T14 2320-2331 Chemical denotes aldosterone http://purl.obolibrary.org/obo/CHEBI_27584|http://purl.obolibrary.org/obo/CHEBI_30834

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T20 1077-1091 Phenotype denotes cytokine storm http://purl.obolibrary.org/obo/HP_0033041
T21 1420-1427 Phenotype denotes hypoxia http://purl.obolibrary.org/obo/HP_0012418
T22 1444-1463 Phenotype denotes respiratory illness http://purl.obolibrary.org/obo/HP_0002086
T23 1744-1765 Phenotype denotes myocardial infarction http://purl.obolibrary.org/obo/HP_0001658
T24 2141-2152 Phenotype denotes arrhythmias http://purl.obolibrary.org/obo/HP_0011675
T25 2239-2250 Phenotype denotes hypokalemia http://purl.obolibrary.org/obo/HP_0002900
T26 2344-2355 Phenotype denotes Hypokalemia http://purl.obolibrary.org/obo/HP_0002900

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T10 737-747 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation
T11 887-905 http://purl.obolibrary.org/obo/GO_0007165 denotes signaling pathways
T12 887-896 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T13 971-983 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation
T14 1051-1072 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammatory response
T15 1610-1622 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation
T16 1808-1820 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T57 0-63 Sentence denotes SARS-CoV-2 is caused by a novel enveloped RNA beta-coronavirus.
T58 64-293 Sentence denotes Seven species of these beta-coronaviruses are known to cause human infections, with four mainly causing mild flulike symptoms and the remaining three resulting in potentially fatal illnesses (SARS, MERS and the ongoing COVID-19).
T59 294-412 Sentence denotes Although respiratory tract is the primary target for SARS-CoV-2, CV system may get involved in several different ways.
T60 413-502 Sentence denotes Following are the common mechanisms responsible for CV complications in COVID-19 [3,4]-1.
T61 504-691 Sentence denotes Direct myocardial injury- SARS-CoV-2 enters human cells by binding to angiotensin-converting enzyme 2 (ACE2), a membrane bound aminopeptidase which is highly expressed in heart and lungs.
T62 692-819 Sentence denotes ACE2 plays an important role in neurohumoral regulation of CV system in normal health as well as in various disease conditions.
T63 820-957 Sentence denotes The binding of SARS-CoV-2 to ACE2 can result in alteration of ACE2 signaling pathways, leading to acute myocardial and lung injury [3,4].
T64 958-960 Sentence denotes 2.
T65 962-1169 Sentence denotes Systemic inflammation- More severe forms of COVID-19 are characterized by acute systemic inflammatory response and cytokine storm, which can result in injury to multiple organs leading to multiorgan failure.
T66 1170-1290 Sentence denotes Studies have shown high circulatory levels of proinflammatory cytokines in patients with severe/critical COVID-19 [5,6].
T67 1291-1293 Sentence denotes 3.
T68 1295-1556 Sentence denotes Altered myocardial demand-supply ratio- Increased cardiometabolic demand associated with the systemic infection coupled with hypoxia caused by acute respiratory illness can impair myocardial oxygen demand-supply relationship and lead to acute myocardial injury.
T69 1557-1559 Sentence denotes 4.
T70 1561-1766 Sentence denotes Plaque rupture and coronary thrombosis- Systemic inflammation as well as increased shear stress due to increased coronary blood flow can precipitate plaque rupture resulting in acute myocardial infarction.
T71 1767-1848 Sentence denotes Prothrombotic milieu created by systemic inflammation further increases the risk.
T72 1849-1851 Sentence denotes 5.
T73 1853-2030 Sentence denotes Adverse effects of various therapies- Various antiviral drugs, corticosteroids and other therapies aimed at treating COVID-19 can also have deleterious effects on the CV system.
T74 2031-2033 Sentence denotes 6.
T75 2035-2204 Sentence denotes Electrolyte imbalances- Electrolyte imbalances can occur in any critical systemic illness and precipitate arrhythmias, esp. in patients with underlying cardiac disorder.
T76 2205-2343 Sentence denotes There is particular concern about hypokalemia in COVID-19, due to interaction of SARS-CoV-2 with renin-angiotensin-aldosterone system [7].
T77 2344-2408 Sentence denotes Hypokalemia increases vulnerability to various tachyarrhythmias.

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T111 0-10 SP_7 denotes SARS-CoV-2
T112 51-62 NCBITaxon:11118 denotes coronavirus
T113 70-77 NCBITaxon:species denotes species
T114 92-105 NCBITaxon:11118 denotes coronaviruses
T115 125-130 SP_6;NCBITaxon:9606 denotes human
T116 256-260 SP_10 denotes SARS
T117 262-266 SP_9 denotes MERS
T118 283-291 SP_7 denotes COVID-19
T119 303-320 UBERON:0000065 denotes respiratory tract
T120 347-357 SP_7 denotes SARS-CoV-2
T121 485-493 SP_7 denotes COVID-19
T122 511-521 UBERON:0002349 denotes myocardial
T123 530-540 SP_7 denotes SARS-CoV-2
T124 548-553 SP_6;NCBITaxon:9606 denotes human
T125 574-605 PG_10;PR:000003622 denotes angiotensin-converting enzyme 2
T126 607-611 G_3;PG_10;PR:000003622 denotes ACE2
T127 616-624 GO:0016020 denotes membrane
T128 662-671 GO:0010467 denotes expressed
T129 675-680 UBERON:0000948 denotes heart
T130 685-690 UBERON:0000170 denotes lungs
T131 692-696 G_3;PG_10;PR:000003622 denotes ACE2
T132 737-747 GO:0065007 denotes regulation
T133 751-753 UBERON:0001017 denotes CV
T134 835-845 SP_7 denotes SARS-CoV-2
T135 849-853 G_3;PG_10;PR:000003622 denotes ACE2
T136 882-886 G_3;PG_10;PR:000003622 denotes ACE2
T137 924-934 UBERON:0002349 denotes myocardial
T138 939-943 UBERON:0002048 denotes lung
T177 1006-1014 SP_7 denotes COVID-19
T178 1132-1138 UBERON:0000062 denotes organs
T179 1150-1160 UBERON:0000062 denotes multiorgan
T180 1275-1283 SP_7 denotes COVID-19
T181 1303-1313 UBERON:0002349 denotes myocardial
T182 1444-1455 UBERON:0001004 denotes respiratory
T183 1475-1485 UBERON:0002349 denotes myocardial
T184 1538-1548 UBERON:0002349 denotes myocardial
T185 1580-1588 UBERON:0005985 denotes coronary
T186 1589-1599 GO:0007596 denotes thrombosis
T187 1674-1682 UBERON:0005985 denotes coronary
T188 1683-1688 UBERON:0000178 denotes blood
T189 1744-1754 UBERON:0002349 denotes myocardial
T190 1767-1780 GO:0007596 denotes Prothrombotic
T191 1909-1914 CHEBI:36044;CHEBI:36044 denotes drugs
T192 1916-1931 CHEBI:50858;CHEBI:50858 denotes corticosteroids
T193 1970-1978 SP_7 denotes COVID-19
T194 2187-2194 UBERON:0000948 denotes cardiac
T195 2254-2262 SP_7 denotes COVID-19
T196 2286-2296 SP_7 denotes SARS-CoV-2
T197 2302-2307 PR:000013883 denotes renin
T90623 1502-1510 SP_7 denotes pply rel
T3419 1556-1564 UBERON:0000948 denotes 4. Pla
T78722 1812-1820 SP_7 denotes ammation
T53635 1825-1834 GO:0007612 denotes her incre
T94419 1854-1865 NCBITaxon:11118 denotes dverse effe
T38989 1884-1889 SP_10 denotes apies
T67414 1927-1931 SP_9 denotes oids
T60021 2161-2169 SP_7 denotes patient
T3699 2193-2201 SP_7 denotes c disord
T86101 2208-2219 NCBITaxon:11118 denotes re is parti
T88588 2252-2259 UBERON:0000948 denotes n COVID
T53986 2263-2277 UBERON:0004535 denotes due to intera
T35855 2295-2305 UBERON:0002349 denotes 2 with ren
T55568 2335-2340 UBERON:0000948 denotes tem [
T45400 2404-2408 SP_10 denotes ias.

2_test

Id Subject Object Predicate Lexical cue
32247212-31986264-25241178 1287-1288 31986264 denotes 6

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
192 574-605 Gene denotes angiotensin-converting enzyme 2 Gene:59272
193 607-611 Gene denotes ACE2 Gene:59272
194 692-696 Gene denotes ACE2 Gene:59272
195 849-853 Gene denotes ACE2 Gene:59272
196 882-886 Gene denotes ACE2 Gene:59272
197 530-540 Species denotes SARS-CoV-2 Tax:2697049
198 548-553 Species denotes human Tax:9606
199 835-845 Species denotes SARS-CoV-2 Tax:2697049
200 511-528 Disease denotes myocardial injury MESH:D009202
201 939-950 Disease denotes lung injury MESH:D055370
206 1245-1253 Species denotes patients Tax:9606
207 971-983 Disease denotes inflammation MESH:D007249
208 1006-1014 Disease denotes COVID-19 MESH:C000657245
209 1275-1283 Disease denotes COVID-19 MESH:C000657245
215 1486-1492 Chemical denotes oxygen MESH:D010100
216 1388-1406 Disease denotes systemic infection MESH:D007239
217 1420-1427 Disease denotes hypoxia MESH:D000860
218 1444-1463 Disease denotes respiratory illness MESH:D012140
219 1538-1555 Disease denotes myocardial injury MESH:D009202
224 1580-1599 Disease denotes coronary thrombosis MESH:D003328
225 1610-1622 Disease denotes inflammation MESH:D007249
226 1744-1765 Disease denotes myocardial infarction MESH:D009203
227 1808-1820 Disease denotes inflammation MESH:D007249
229 1970-1978 Disease denotes COVID-19 MESH:C000657245
241 2154-2157 Gene denotes esp Gene:148713
242 2162-2170 Species denotes patients Tax:9606
243 2286-2296 Species denotes SARS-CoV-2 Tax:2697049
244 2320-2331 Chemical denotes aldosterone MESH:D000450
245 2108-2124 Disease denotes systemic illness MESH:D002908
246 2141-2152 Disease denotes arrhythmias MESH:D001145
247 2187-2203 Disease denotes cardiac disorder MESH:D006331
248 2239-2250 Disease denotes hypokalemia MESH:D007008
249 2254-2262 Disease denotes COVID-19 MESH:C000657245
250 2344-2355 Disease denotes Hypokalemia MESH:D007008
251 2391-2407 Disease denotes tachyarrhythmias MESH:D013610
262 0-10 Species denotes SARS-CoV-2 Tax:2697049
263 46-62 Species denotes beta-coronavirus Tax:694002
264 87-105 Species denotes beta-coronaviruses Tax:694002
265 125-130 Species denotes human Tax:9606
266 347-357 Species denotes SARS-CoV-2 Tax:2697049
267 131-141 Disease denotes infections MESH:D007239
268 173-189 Disease denotes flulike symptoms MESH:D051271
269 262-266 Disease denotes MERS MESH:D018352
270 283-291 Disease denotes COVID-19 MESH:C000657245
271 485-493 Disease denotes COVID-19 MESH:C000657245