> top > docs > PMC:7102662 > spans > 2121-4809 > annotations

PMC:7102662 / 2121-4809 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid_Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 2400-2407 https://glytoucan.org/Structures/Glycans/G15021LG denotes glucose

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T3 966-976 Body_part denotes troponin I http://purl.org/sig/ont/fma/fma62340
T4 966-974 Body_part denotes troponin http://purl.org/sig/ont/fma/fma62338
T5 1473-1488 Body_part denotes coronary artery http://purl.org/sig/ont/fma/fma49893
T6 1664-1669 Body_part denotes Heart http://purl.org/sig/ont/fma/fma7088
T7 1855-1860 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088
T8 1974-1979 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088
T9 2390-2395 Body_part denotes lipid http://purl.org/sig/ont/fma/fma67264
T10 2400-2407 Body_part denotes glucose http://purl.org/sig/ont/fma/fma82743

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 1473-1488 Body_part denotes coronary artery http://purl.obolibrary.org/obo/UBERON_0001621
T2 1482-1488 Body_part denotes artery http://purl.obolibrary.org/obo/UBERON_0001637
T3 1664-1669 Body_part denotes Heart http://purl.obolibrary.org/obo/UBERON_0000948
T4 1855-1860 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948
T5 1974-1979 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T21 56-103 Disease denotes Severe Acute Respiratory Syndrome-Coronavirus-2 http://purl.obolibrary.org/obo/MONDO_0100096
T22 56-89 Disease denotes Severe Acute Respiratory Syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T23 105-113 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T24 452-476 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T25 478-488 Disease denotes COVID-2019 http://purl.obolibrary.org/obo/MONDO_0100096
T26 615-624 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T27 839-863 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T28 911-917 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T29 1165-1171 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T30 1182-1194 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166
T31 1407-1419 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166
T32 1473-1496 Disease denotes coronary artery disease http://purl.obolibrary.org/obo/MONDO_0005010
T33 1482-1496 Disease denotes artery disease http://purl.obolibrary.org/obo/MONDO_0000473
T34 1664-1677 Disease denotes Heart failure http://purl.obolibrary.org/obo/MONDO_0005252
T35 1855-1868 Disease denotes heart failure http://purl.obolibrary.org/obo/MONDO_0005252
T36 1903-1919 Disease denotes systemic disease http://purl.obolibrary.org/obo/MONDO_0015938
T37 1974-1987 Disease denotes heart failure http://purl.obolibrary.org/obo/MONDO_0005252
T38 1988-1998 Disease denotes Arrhythmia http://purl.obolibrary.org/obo/MONDO_0007263
T39 2223-2247 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T40 2310-2343 Disease denotes Severe Acute Respiratory Syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T41 2474-2480 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T42 2663-2687 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T6 118-121 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T7 355-360 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T8 399-400 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 575-576 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 625-628 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T11 747-759 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T12 1482-1488 http://purl.obolibrary.org/obo/UBERON_0001637 denotes artery
T13 1482-1488 http://www.ebi.ac.uk/efo/EFO_0000814 denotes artery
T14 1664-1669 http://purl.obolibrary.org/obo/UBERON_0000948 denotes Heart
T15 1664-1669 http://purl.obolibrary.org/obo/UBERON_0007100 denotes Heart
T16 1664-1669 http://purl.obolibrary.org/obo/UBERON_0015228 denotes Heart
T17 1664-1669 http://www.ebi.ac.uk/efo/EFO_0000815 denotes Heart
T18 1701-1703 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T19 1855-1860 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T20 1855-1860 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T21 1855-1860 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T22 1855-1860 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T23 1901-1902 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T24 1974-1979 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T25 1974-1979 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T26 1974-1979 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T27 1974-1979 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T28 2283-2284 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T29 2484-2485 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T30 2623-2626 http://purl.obolibrary.org/obo/CLO_0051582 denotes has

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 1207-1213 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T2 2390-2395 Chemical denotes lipid http://purl.obolibrary.org/obo/CHEBI_18059
T3 2400-2407 Chemical denotes glucose http://purl.obolibrary.org/obo/CHEBI_17234|http://purl.obolibrary.org/obo/CHEBI_4167

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T6 1069-1095 Phenotype denotes cardiovascular abnormality http://purl.obolibrary.org/obo/HP_0001626
T7 1497-1534 Phenotype denotes Left ventricular systolic dysfunction http://purl.obolibrary.org/obo/HP_0025169
T8 1626-1663 Phenotype denotes left ventricular systolic dysfunction http://purl.obolibrary.org/obo/HP_0025169
T9 1664-1677 Phenotype denotes Heart failure http://purl.obolibrary.org/obo/HP_0001635
T10 1855-1868 Phenotype denotes heart failure http://purl.obolibrary.org/obo/HP_0001635
T11 1974-1987 Phenotype denotes heart failure http://purl.obolibrary.org/obo/HP_0001635
T12 1988-1998 Phenotype denotes Arrhythmia http://purl.obolibrary.org/obo/HP_0011675

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T2 301-310 http://purl.obolibrary.org/obo/GO_0016032 denotes virulence
T3 301-310 http://purl.obolibrary.org/obo/GO_0009405 denotes virulence
T4 1182-1194 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation
T5 1407-1419 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation
T6 2400-2418 http://purl.obolibrary.org/obo/GO_0006006 denotes glucose metabolism
T7 2408-2418 http://purl.obolibrary.org/obo/GO_0008152 denotes metabolism
T8 2441-2452 http://purl.obolibrary.org/obo/GO_0042592 denotes homeostasis

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T24 0-205 Sentence denotes The emergence of novel coronavirus, officially known as Severe Acute Respiratory Syndrome-Coronavirus-2 (SARS-CoV-2), has presented an unprecedented challenge for the healthcare community across the world.
T25 206-410 Sentence denotes High infectivity, ability to get transmitted even during asymptomatic phase and relatively low virulence have resulted in rapid transmission of this virus beyond geographic regions, leading to a pandemic.
T26 411-555 Sentence denotes The first case of this disease, known as coronavirus disease 2019 (COVID-2019), occurred on December 8, 2019 in the Hubei province of China [1].
T27 556-798 Sentence denotes Since then, within a short span of just over 3 months, the infection has spread to 177 countries/area/territories across the world, with 266073 confirmed cases and 11184 deaths (World Health Organization statistics as on March 21, 2020) [2] .
T28 799-864 Sentence denotes Table 1 Cardiovascular complications in coronavirus disease 2019.
T29 865-896 Sentence denotes Manifestation Incidence Remarks
T30 897-1095 Sentence denotes Acute cardiac injury∗ (most commonly defined as elevation of cardiac troponin I above 99th percentile upper reference limit) 8–12% on average [10] • Most commonly reported cardiovascular abnormality
T31 1096-1171 Sentence denotes • Can result from any of the following mechanisms-•Direct myocardial injury
T32 1172-1194 Sentence denotes •Systemic inflammation
T33 1195-1236 Sentence denotes •Myocardial oxygen demand supply mismatch
T34 1237-1258 Sentence denotes •Acute coronary event
T35 1259-1270 Sentence denotes •Iatrogenic
T36 1271-1304 Sentence denotes • Strong adverse prognostic value
T37 1305-1442 Sentence denotes Acute coronary event Not reported, but appears to be low Potential mechanisms-• Plaque rupture due to inflammation/increased shear stress
T38 1443-1496 Sentence denotes • Aggravation of pre-existing coronary artery disease
T39 1497-1663 Sentence denotes Left ventricular systolic dysfunction Not reported Any of the causes of myocardial dysfunction mentioned above can lead to acute left ventricular systolic dysfunction
T40 1664-1868 Sentence denotes Heart failure Reported in one study- 52% in those who died, 12% in those who recovered and were discharged [5] • Any of the causes of myocardial dysfunction mentioned above can lead to acute heart failure
T41 1869-1987 Sentence denotes • Increased metabolic demand of a systemic disease can cause acute decompensation of pre-existing stable heart failure
T42 1988-2142 Sentence denotes Arrhythmia 16.7% overall; 44.4 in severe illness, 8.9% in mild cases [8] Both tachyarrhythmia and bradyarrhythmia can occur but exact nature not described
T43 2143-2248 Sentence denotes Potential long-term consequences Too early to assess Too early to ascertain for coronavirus disease 2019.
T44 2249-2457 Sentence denotes However, patients recovering from a similar earlier illness- Severe Acute Respiratory Syndrome- continued to have long-term abnormalities of lipid and glucose metabolism and of cardiovascular homeostasis [12]
T45 2458-2688 Sentence denotes ∗ Acute cardiac injury is a non-specific term with significant overlap with other cardiovascular manifestations; however, it is listed here because of how reporting has been done in most of the studies on coronavirus disease 2019.

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T38 23-34 NCBITaxon:11118 denotes coronavirus
T39 56-103 SP_7 denotes Severe Acute Respiratory Syndrome-Coronavirus-2
T40 105-115 SP_7 denotes SARS-CoV-2
T41 355-360 NCBITaxon:10239 denotes virus
T42 452-463 NCBITaxon:11118 denotes coronavirus
T43 726-732 GO:0016265 denotes deaths
T44 839-850 NCBITaxon:11118 denotes coronavirus
T45 903-910 UBERON:0000948 denotes cardiac
T46 958-965 UBERON:0000948 denotes cardiac
T47 1069-1083 UBERON:0004535 denotes cardiovascular
T48 1154-1164 UBERON:0002349 denotes myocardial
T49 1196-1206 UBERON:0002349 denotes Myocardial
T50 1244-1252 UBERON:0001621 denotes coronary
T51 1311-1319 UBERON:0001621 denotes coronary
T52 1473-1488 UBERON:0001621 denotes coronary artery
T53 1502-1513 UBERON:0002082 denotes ventricular
T54 1569-1579 UBERON:0002349 denotes myocardial
T55 1626-1642 UBERON:0002084 denotes left ventricular
T56 1718-1722 GO:0016265 denotes died
T57 1798-1808 UBERON:0002349 denotes myocardial
T58 1855-1860 UBERON:0000948 denotes heart
T59 1881-1890 GO:0008152 denotes metabolic
T60 1974-1979 UBERON:0000948 denotes heart
T61 2223-2234 NCBITaxon:11118 denotes coronavirus
T62 2390-2395 CHEBI:18059;CHEBI:18059;GO:0006629 denotes lipid
T63 2400-2407 CHEBI:17234;CHEBI:17234;GO:0006006 denotes glucose
T64 2408-2418 GO:0006006 denotes metabolism
T65 2426-2440 UBERON:0004535 denotes cardiovascular
T66 2441-2452 GO:0042592 denotes homeostasis
T67 2466-2473 UBERON:0000948 denotes cardiac
T68 2540-2554 UBERON:0004535 denotes cardiovascular
T69 2663-2674 NCBITaxon:11118 denotes coronavirus
T33 2466-2473 UBERON:0000948 denotes cardiac

2_test

Id Subject Object Predicate Lexical cue
32247212-28831119-25241177 2454-2456 28831119 denotes 12

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
90 958-976 Gene denotes cardiac troponin I Gene:7137
91 2258-2266 Species denotes patients Tax:9606
92 903-917 Disease denotes cardiac injury MESH:D006331
93 1069-1101 Disease denotes cardiovascular abnormality • Can MESH:D002318
94 1154-1194 Disease denotes myocardial injury •Systemic inflammation MESH:D009202
95 1407-1419 Disease denotes inflammation MESH:D007249
96 1473-1496 Disease denotes coronary artery disease MESH:D003324
97 1497-1534 Disease denotes Left ventricular systolic dysfunction MESH:D018487
98 1569-1591 Disease denotes myocardial dysfunction MESH:D009202
99 1626-1677 Disease denotes left ventricular systolic dysfunction Heart failure MESH:D006333
100 1718-1722 Disease denotes died MESH:D003643
101 1798-1820 Disease denotes myocardial dysfunction MESH:D009202
102 1855-1897 Disease denotes heart failure • Increased metabolic demand MESH:D008659
103 1974-1998 Disease denotes heart failure Arrhythmia MESH:D001145
104 2066-2101 Disease denotes tachyarrhythmia and bradyarrhythmia MESH:D001919
105 2223-2247 Disease denotes coronavirus disease 2019 MESH:C000657245
106 2373-2418 Disease denotes abnormalities of lipid and glucose metabolism MESH:D044882
107 2426-2452 Disease denotes cardiovascular homeostasis MESH:D002318
109 839-863 Disease denotes coronavirus disease 2019 MESH:C000657245
112 2466-2480 Disease denotes cardiac injury MESH:D006331
113 2663-2687 Disease denotes coronavirus disease 2019 MESH:C000657245
121 17-34 Species denotes novel coronavirus Tax:2697049
122 56-103 Species denotes Severe Acute Respiratory Syndrome-Coronavirus-2 Tax:2697049
123 105-115 Species denotes SARS-CoV-2 Tax:2697049
124 452-476 Disease denotes coronavirus disease 2019 MESH:C000657245
125 478-488 Disease denotes COVID-2019 MESH:C000657245
126 615-624 Disease denotes infection MESH:D007239
127 726-732 Disease denotes deaths MESH:D003643