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PMC:7102591 / 2449-3697 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
88 992-1005 Gene denotes interleukin 6 Gene:3569
89 1007-1011 Gene denotes IL-6 Gene:3569
90 120-128 Species denotes patients Tax:9606
91 319-327 Species denotes patients Tax:9606
92 811-822 Chemical denotes Chloroquine MESH:D002738
93 827-845 Chemical denotes hydroxychloroquine MESH:D006886
94 81-89 Disease denotes COVID-19 MESH:C000657245
95 112-119 Disease denotes fragile MESH:D005600
96 630-650 Disease denotes SARS-CoV-2 infection MESH:C000657245
97 726-746 Disease denotes rheumatoid arthritis MESH:D001172
98 748-750 Disease denotes RA MESH:D001172
99 801-809 Disease denotes COVID-19 MESH:C000657245
100 943-961 Disease denotes COVID-19 pneumonia MESH:C000657245
101 1143-1154 Disease denotes lung damage MESH:D008171
102 1174-1178 Disease denotes ARDS MESH:D012128
103 1224-1242 Disease denotes SARS-CoV infection MESH:C000657245

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T4 210-214 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712
T5 576-580 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712
T6 992-1005 Body_part denotes interleukin 6 http://purl.org/sig/ont/fma/fma264829
T7 992-1003 Body_part denotes interleukin http://purl.org/sig/ont/fma/fma86578
T8 1083-1091 Body_part denotes cytokine http://purl.org/sig/ont/fma/fma84050
T9 1143-1147 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T2 210-214 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398
T3 576-580 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398
T4 1143-1147 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T33 81-89 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T34 383-393 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T35 630-638 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T36 641-650 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T37 726-746 Disease denotes rheumatoid arthritis http://purl.obolibrary.org/obo/MONDO_0008383
T38 737-746 Disease denotes arthritis http://purl.obolibrary.org/obo/MONDO_0005578
T39 748-750 Disease denotes RA http://purl.obolibrary.org/obo/MONDO_0005272|http://purl.obolibrary.org/obo/MONDO_0008383
T41 801-809 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T42 943-951 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T43 952-961 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T44 1174-1178 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T45 1224-1242 Disease denotes SARS-CoV infection http://purl.obolibrary.org/obo/MONDO_0005091
T46 1233-1242 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T15 992-1005 http://purl.obolibrary.org/obo/PR_000001393 denotes interleukin 6
T16 1143-1147 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T17 1143-1147 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T18 1244-1246 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T10 457-481 Chemical denotes immunosuppressive agents http://purl.obolibrary.org/obo/CHEBI_35705
T11 490-505 Chemical denotes corticosteroids http://purl.obolibrary.org/obo/CHEBI_50858
T12 552-557 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T13 685-690 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T14 748-750 Chemical denotes RA http://purl.obolibrary.org/obo/CHEBI_73810
T15 811-822 Chemical denotes Chloroquine http://purl.obolibrary.org/obo/CHEBI_3638
T16 827-845 Chemical denotes hydroxychloroquine http://purl.obolibrary.org/obo/CHEBI_5801
T17 892-907 Chemical denotes antiviral drugs http://purl.obolibrary.org/obo/CHEBI_36044
T18 892-901 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T19 902-907 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T20 1007-1009 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 614-626 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T16 0-198 Sentence denotes In this context of growing health emergency, clarifying the relationship between COVID-19 and the population of fragile patients suffering from immune-rheumatological diseases is absolutely crucial.
T17 199-562 Sentence denotes On the one hand, the rapid and uncontrolled spread of the epidemic can clearly generate even more concerns in rheumatic patients, which are intrinsically characterized by an increased infectious risk due to the disease itself and to the iatrogenic effect of immunosuppressive agents such as corticosteroids and synthetic or biological disease-modifying drugs [9].
T18 563-810 Sentence denotes On the other hand, the growing knowledge about the pathogenesis of SARS-CoV-2 infection is leading to the introduction of drugs commonly used for the treatment of rheumatoid arthritis (RA) even for the management of more complex cases of COVID-19.
T19 811-967 Sentence denotes Chloroquine and hydroxychloroquine have now been permanently included, alongside antiviral drugs, in protocols for the treatment of COVID-19 pneumonia [10].
T20 968-1248 Sentence denotes In addition, the use of interleukin 6 (IL-6) blockers seems to be very promising for the management of the massive cytokine storm associated to the development of the typical lung damage and the consequent ARDS occurring in the most aggressive patterns of SARS-CoV infection [11].

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T15 726-746 Phenotype denotes rheumatoid arthritis http://purl.obolibrary.org/obo/HP_0001370
T16 748-750 Phenotype denotes RA http://purl.obolibrary.org/obo/HP_0001370
T17 952-961 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T18 1083-1097 Phenotype denotes cytokine storm http://purl.obolibrary.org/obo/HP_0033041

2_test

Id Subject Object Predicate Lexical cue
32205186-25172238-4826867 559-560 25172238 denotes 9