PMC:7102583 / 2804-3682
Annnotations
LitCovid-PubTator
{"project":"LitCovid-PubTator","denotations":[{"id":"139","span":{"begin":0,"end":8},"obj":"Species"},{"id":"140","span":{"begin":45,"end":55},"obj":"Species"},{"id":"141","span":{"begin":181,"end":189},"obj":"Species"},{"id":"142","span":{"begin":429,"end":437},"obj":"Species"},{"id":"143","span":{"begin":706,"end":713},"obj":"Species"},{"id":"144","span":{"begin":14,"end":22},"obj":"Disease"},{"id":"145","span":{"begin":33,"end":41},"obj":"Disease"},{"id":"146","span":{"begin":86,"end":91},"obj":"Disease"},{"id":"147","span":{"begin":93,"end":102},"obj":"Disease"},{"id":"148","span":{"begin":104,"end":111},"obj":"Disease"},{"id":"149","span":{"begin":113,"end":120},"obj":"Disease"},{"id":"150","span":{"begin":126,"end":134},"obj":"Disease"},{"id":"151","span":{"begin":264,"end":268},"obj":"Disease"},{"id":"152","span":{"begin":270,"end":289},"obj":"Disease"},{"id":"153","span":{"begin":291,"end":304},"obj":"Disease"},{"id":"154","span":{"begin":306,"end":312},"obj":"Disease"},{"id":"155","span":{"begin":325,"end":339},"obj":"Disease"},{"id":"156","span":{"begin":420,"end":428},"obj":"Disease"},{"id":"157","span":{"begin":478,"end":486},"obj":"Disease"},{"id":"158","span":{"begin":502,"end":513},"obj":"Disease"},{"id":"159","span":{"begin":530,"end":535},"obj":"Disease"},{"id":"160","span":{"begin":697,"end":705},"obj":"Disease"},{"id":"161","span":{"begin":726,"end":730},"obj":"Disease"},{"id":"162","span":{"begin":745,"end":753},"obj":"Disease"},{"id":"163","span":{"begin":812,"end":817},"obj":"Disease"}],"attributes":[{"id":"A139","pred":"tao:has_database_id","subj":"139","obj":"Tax:9606"},{"id":"A140","pred":"tao:has_database_id","subj":"140","obj":"Tax:2697049"},{"id":"A141","pred":"tao:has_database_id","subj":"141","obj":"Tax:9606"},{"id":"A142","pred":"tao:has_database_id","subj":"142","obj":"Tax:9606"},{"id":"A143","pred":"tao:has_database_id","subj":"143","obj":"Tax:9606"},{"id":"A144","pred":"tao:has_database_id","subj":"144","obj":"MESH:C000657245"},{"id":"A145","pred":"tao:has_database_id","subj":"145","obj":"MESH:D007239"},{"id":"A146","pred":"tao:has_database_id","subj":"146","obj":"MESH:D005334"},{"id":"A147","pred":"tao:has_database_id","subj":"147","obj":"MESH:D003371"},{"id":"A148","pred":"tao:has_database_id","subj":"148","obj":"MESH:D063806"},{"id":"A149","pred":"tao:has_database_id","subj":"149","obj":"MESH:D005221"},{"id":"A150","pred":"tao:has_database_id","subj":"150","obj":"MESH:D003967"},{"id":"A151","pred":"tao:has_database_id","subj":"151","obj":"MESH:D012128"},{"id":"A152","pred":"tao:has_database_id","subj":"152","obj":"MESH:D012131"},{"id":"A153","pred":"tao:has_database_id","subj":"153","obj":"MESH:D006333"},{"id":"A154","pred":"tao:has_database_id","subj":"154","obj":"MESH:D018805"},{"id":"A155","pred":"tao:has_database_id","subj":"155","obj":"MESH:D006323"},{"id":"A156","pred":"tao:has_database_id","subj":"156","obj":"MESH:C000657245"},{"id":"A157","pred":"tao:has_database_id","subj":"157","obj":"MESH:C000657245"},{"id":"A158","pred":"tao:has_database_id","subj":"158","obj":"MESH:D008175"},{"id":"A159","pred":"tao:has_database_id","subj":"159","obj":"MESH:D004487"},{"id":"A160","pred":"tao:has_database_id","subj":"160","obj":"MESH:C000657245"},{"id":"A161","pred":"tao:has_database_id","subj":"161","obj":"MESH:D012128"},{"id":"A162","pred":"tao:has_database_id","subj":"162","obj":"MESH:D007239"},{"id":"A163","pred":"tao:has_database_id","subj":"163","obj":"MESH:D004487"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Patients with COVID-19 (who were infected by SARS-CoV-2) are reported to present with fever, dry cough, myalgia, fatigue, and diarrhea, etc. with symptoms varying somewhat with the patients' age. In some cases, the severe progression of the disease results in ALI/ARDS, respiratory failure, heart failure, sepsis, and sudden cardiac arrest within a few days [2,7]. The pathogenic examination of lung specimens from mild COVID-19 patients (who were retrospectively found to have COVID-19 at the time of lung cancer surgery) showed edema, proteinaceous exudate with globules, patchy inflammatory cellular infiltration and moderate formation of hyaline membranes [8]. In a postmortem assessment of a COVID-19 patient with severe ARDS, specimens of infected lungs demonstrated bilateral diffuse alveolar damage with edema, pneumocyte desquamation and hyaline membrane formation [9]."}
LitCovid-PD-FMA-UBERON
{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T18","span":{"begin":291,"end":296},"obj":"Body_part"},{"id":"T19","span":{"begin":395,"end":399},"obj":"Body_part"},{"id":"T20","span":{"begin":502,"end":506},"obj":"Body_part"},{"id":"T21","span":{"begin":754,"end":759},"obj":"Body_part"},{"id":"T22","span":{"begin":791,"end":799},"obj":"Body_part"},{"id":"T23","span":{"begin":819,"end":829},"obj":"Body_part"}],"attributes":[{"id":"A18","pred":"fma_id","subj":"T18","obj":"http://purl.org/sig/ont/fma/fma7088"},{"id":"A19","pred":"fma_id","subj":"T19","obj":"http://purl.org/sig/ont/fma/fma7195"},{"id":"A20","pred":"fma_id","subj":"T20","obj":"http://purl.org/sig/ont/fma/fma7195"},{"id":"A21","pred":"fma_id","subj":"T21","obj":"http://purl.org/sig/ont/fma/fma68877"},{"id":"A22","pred":"fma_id","subj":"T22","obj":"http://purl.org/sig/ont/fma/fma264783"},{"id":"A23","pred":"fma_id","subj":"T23","obj":"http://purl.org/sig/ont/fma/fma62499"}],"text":"Patients with COVID-19 (who were infected by SARS-CoV-2) are reported to present with fever, dry cough, myalgia, fatigue, and diarrhea, etc. with symptoms varying somewhat with the patients' age. In some cases, the severe progression of the disease results in ALI/ARDS, respiratory failure, heart failure, sepsis, and sudden cardiac arrest within a few days [2,7]. The pathogenic examination of lung specimens from mild COVID-19 patients (who were retrospectively found to have COVID-19 at the time of lung cancer surgery) showed edema, proteinaceous exudate with globules, patchy inflammatory cellular infiltration and moderate formation of hyaline membranes [8]. In a postmortem assessment of a COVID-19 patient with severe ARDS, specimens of infected lungs demonstrated bilateral diffuse alveolar damage with edema, pneumocyte desquamation and hyaline membrane formation [9]."}
LitCovid-PD-UBERON
{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T6","span":{"begin":291,"end":296},"obj":"Body_part"},{"id":"T7","span":{"begin":395,"end":399},"obj":"Body_part"},{"id":"T8","span":{"begin":502,"end":506},"obj":"Body_part"},{"id":"T9","span":{"begin":551,"end":558},"obj":"Body_part"}],"attributes":[{"id":"A6","pred":"uberon_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/UBERON_0000948"},{"id":"A7","pred":"uberon_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"A8","pred":"uberon_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"A9","pred":"uberon_id","subj":"T9","obj":"http://purl.obolibrary.org/obo/UBERON_0007780"}],"text":"Patients with COVID-19 (who were infected by SARS-CoV-2) are reported to present with fever, dry cough, myalgia, fatigue, and diarrhea, etc. with symptoms varying somewhat with the patients' age. In some cases, the severe progression of the disease results in ALI/ARDS, respiratory failure, heart failure, sepsis, and sudden cardiac arrest within a few days [2,7]. The pathogenic examination of lung specimens from mild COVID-19 patients (who were retrospectively found to have COVID-19 at the time of lung cancer surgery) showed edema, proteinaceous exudate with globules, patchy inflammatory cellular infiltration and moderate formation of hyaline membranes [8]. In a postmortem assessment of a COVID-19 patient with severe ARDS, specimens of infected lungs demonstrated bilateral diffuse alveolar damage with edema, pneumocyte desquamation and hyaline membrane formation [9]."}
LitCovid-PD-MONDO
{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T41","span":{"begin":14,"end":22},"obj":"Disease"},{"id":"T42","span":{"begin":45,"end":53},"obj":"Disease"},{"id":"T43","span":{"begin":126,"end":134},"obj":"Disease"},{"id":"T44","span":{"begin":260,"end":263},"obj":"Disease"},{"id":"T45","span":{"begin":264,"end":268},"obj":"Disease"},{"id":"T46","span":{"begin":270,"end":289},"obj":"Disease"},{"id":"T47","span":{"begin":291,"end":304},"obj":"Disease"},{"id":"T48","span":{"begin":318,"end":339},"obj":"Disease"},{"id":"T49","span":{"begin":325,"end":339},"obj":"Disease"},{"id":"T50","span":{"begin":420,"end":428},"obj":"Disease"},{"id":"T51","span":{"begin":478,"end":486},"obj":"Disease"},{"id":"T52","span":{"begin":502,"end":513},"obj":"Disease"},{"id":"T53","span":{"begin":507,"end":513},"obj":"Disease"},{"id":"T54","span":{"begin":697,"end":705},"obj":"Disease"},{"id":"T55","span":{"begin":726,"end":730},"obj":"Disease"}],"attributes":[{"id":"A41","pred":"mondo_id","subj":"T41","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A42","pred":"mondo_id","subj":"T42","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A43","pred":"mondo_id","subj":"T43","obj":"http://purl.obolibrary.org/obo/MONDO_0001673"},{"id":"A44","pred":"mondo_id","subj":"T44","obj":"http://purl.obolibrary.org/obo/MONDO_0006502"},{"id":"A45","pred":"mondo_id","subj":"T45","obj":"http://purl.obolibrary.org/obo/MONDO_0006502"},{"id":"A46","pred":"mondo_id","subj":"T46","obj":"http://purl.obolibrary.org/obo/MONDO_0021113"},{"id":"A47","pred":"mondo_id","subj":"T47","obj":"http://purl.obolibrary.org/obo/MONDO_0005252"},{"id":"A48","pred":"mondo_id","subj":"T48","obj":"http://purl.obolibrary.org/obo/MONDO_0007264"},{"id":"A49","pred":"mondo_id","subj":"T49","obj":"http://purl.obolibrary.org/obo/MONDO_0000745"},{"id":"A50","pred":"mondo_id","subj":"T50","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A51","pred":"mondo_id","subj":"T51","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A52","pred":"mondo_id","subj":"T52","obj":"http://purl.obolibrary.org/obo/MONDO_0008903"},{"id":"A53","pred":"mondo_id","subj":"T53","obj":"http://purl.obolibrary.org/obo/MONDO_0004992"},{"id":"A54","pred":"mondo_id","subj":"T54","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A55","pred":"mondo_id","subj":"T55","obj":"http://purl.obolibrary.org/obo/MONDO_0006502"}],"text":"Patients with COVID-19 (who were infected by SARS-CoV-2) are reported to present with fever, dry cough, myalgia, fatigue, and diarrhea, etc. with symptoms varying somewhat with the patients' age. In some cases, the severe progression of the disease results in ALI/ARDS, respiratory failure, heart failure, sepsis, and sudden cardiac arrest within a few days [2,7]. The pathogenic examination of lung specimens from mild COVID-19 patients (who were retrospectively found to have COVID-19 at the time of lung cancer surgery) showed edema, proteinaceous exudate with globules, patchy inflammatory cellular infiltration and moderate formation of hyaline membranes [8]. In a postmortem assessment of a COVID-19 patient with severe ARDS, specimens of infected lungs demonstrated bilateral diffuse alveolar damage with edema, pneumocyte desquamation and hyaline membrane formation [9]."}
LitCovid-PD-CLO
{"project":"LitCovid-PD-CLO","denotations":[{"id":"T29","span":{"begin":291,"end":296},"obj":"http://purl.obolibrary.org/obo/UBERON_0000948"},{"id":"T30","span":{"begin":291,"end":296},"obj":"http://purl.obolibrary.org/obo/UBERON_0007100"},{"id":"T31","span":{"begin":291,"end":296},"obj":"http://purl.obolibrary.org/obo/UBERON_0015228"},{"id":"T32","span":{"begin":291,"end":296},"obj":"http://www.ebi.ac.uk/efo/EFO_0000815"},{"id":"T33","span":{"begin":347,"end":348},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T34","span":{"begin":395,"end":399},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"T35","span":{"begin":395,"end":399},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"},{"id":"T36","span":{"begin":502,"end":506},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"T37","span":{"begin":502,"end":506},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"},{"id":"T38","span":{"begin":650,"end":659},"obj":"http://purl.obolibrary.org/obo/UBERON_0000158"},{"id":"T39","span":{"begin":668,"end":669},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T40","span":{"begin":695,"end":696},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T41","span":{"begin":754,"end":759},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"},{"id":"T42","span":{"begin":855,"end":863},"obj":"http://purl.obolibrary.org/obo/UBERON_0000158"}],"text":"Patients with COVID-19 (who were infected by SARS-CoV-2) are reported to present with fever, dry cough, myalgia, fatigue, and diarrhea, etc. with symptoms varying somewhat with the patients' age. In some cases, the severe progression of the disease results in ALI/ARDS, respiratory failure, heart failure, sepsis, and sudden cardiac arrest within a few days [2,7]. The pathogenic examination of lung specimens from mild COVID-19 patients (who were retrospectively found to have COVID-19 at the time of lung cancer surgery) showed edema, proteinaceous exudate with globules, patchy inflammatory cellular infiltration and moderate formation of hyaline membranes [8]. In a postmortem assessment of a COVID-19 patient with severe ARDS, specimens of infected lungs demonstrated bilateral diffuse alveolar damage with edema, pneumocyte desquamation and hyaline membrane formation [9]."}
LitCovid-PD-GO-BP
{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T8","span":{"begin":629,"end":638},"obj":"http://purl.obolibrary.org/obo/GO_0009058"},{"id":"T9","span":{"begin":864,"end":873},"obj":"http://purl.obolibrary.org/obo/GO_0009058"}],"text":"Patients with COVID-19 (who were infected by SARS-CoV-2) are reported to present with fever, dry cough, myalgia, fatigue, and diarrhea, etc. with symptoms varying somewhat with the patients' age. In some cases, the severe progression of the disease results in ALI/ARDS, respiratory failure, heart failure, sepsis, and sudden cardiac arrest within a few days [2,7]. The pathogenic examination of lung specimens from mild COVID-19 patients (who were retrospectively found to have COVID-19 at the time of lung cancer surgery) showed edema, proteinaceous exudate with globules, patchy inflammatory cellular infiltration and moderate formation of hyaline membranes [8]. In a postmortem assessment of a COVID-19 patient with severe ARDS, specimens of infected lungs demonstrated bilateral diffuse alveolar damage with edema, pneumocyte desquamation and hyaline membrane formation [9]."}
LitCovid-sentences
{"project":"LitCovid-sentences","denotations":[{"id":"T24","span":{"begin":0,"end":195},"obj":"Sentence"},{"id":"T25","span":{"begin":196,"end":364},"obj":"Sentence"},{"id":"T26","span":{"begin":365,"end":664},"obj":"Sentence"},{"id":"T27","span":{"begin":665,"end":878},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Patients with COVID-19 (who were infected by SARS-CoV-2) are reported to present with fever, dry cough, myalgia, fatigue, and diarrhea, etc. with symptoms varying somewhat with the patients' age. In some cases, the severe progression of the disease results in ALI/ARDS, respiratory failure, heart failure, sepsis, and sudden cardiac arrest within a few days [2,7]. The pathogenic examination of lung specimens from mild COVID-19 patients (who were retrospectively found to have COVID-19 at the time of lung cancer surgery) showed edema, proteinaceous exudate with globules, patchy inflammatory cellular infiltration and moderate formation of hyaline membranes [8]. In a postmortem assessment of a COVID-19 patient with severe ARDS, specimens of infected lungs demonstrated bilateral diffuse alveolar damage with edema, pneumocyte desquamation and hyaline membrane formation [9]."}
LitCovid-PD-HP
{"project":"LitCovid-PD-HP","denotations":[{"id":"T13","span":{"begin":86,"end":91},"obj":"Phenotype"},{"id":"T14","span":{"begin":93,"end":102},"obj":"Phenotype"},{"id":"T15","span":{"begin":104,"end":111},"obj":"Phenotype"},{"id":"T16","span":{"begin":113,"end":120},"obj":"Phenotype"},{"id":"T17","span":{"begin":126,"end":134},"obj":"Phenotype"},{"id":"T18","span":{"begin":260,"end":263},"obj":"Phenotype"},{"id":"T19","span":{"begin":270,"end":289},"obj":"Phenotype"},{"id":"T20","span":{"begin":291,"end":304},"obj":"Phenotype"},{"id":"T21","span":{"begin":306,"end":312},"obj":"Phenotype"},{"id":"T22","span":{"begin":318,"end":339},"obj":"Phenotype"},{"id":"T23","span":{"begin":502,"end":513},"obj":"Phenotype"},{"id":"T24","span":{"begin":530,"end":535},"obj":"Phenotype"},{"id":"T25","span":{"begin":783,"end":806},"obj":"Phenotype"},{"id":"T26","span":{"begin":812,"end":817},"obj":"Phenotype"},{"id":"T27","span":{"begin":830,"end":842},"obj":"Phenotype"}],"attributes":[{"id":"A13","pred":"hp_id","subj":"T13","obj":"http://purl.obolibrary.org/obo/HP_0001945"},{"id":"A14","pred":"hp_id","subj":"T14","obj":"http://purl.obolibrary.org/obo/HP_0031246"},{"id":"A15","pred":"hp_id","subj":"T15","obj":"http://purl.obolibrary.org/obo/HP_0003326"},{"id":"A16","pred":"hp_id","subj":"T16","obj":"http://purl.obolibrary.org/obo/HP_0012378"},{"id":"A17","pred":"hp_id","subj":"T17","obj":"http://purl.obolibrary.org/obo/HP_0002014"},{"id":"A18","pred":"hp_id","subj":"T18","obj":"http://www.orpha.net/ORDO/Orphanet_178320"},{"id":"A19","pred":"hp_id","subj":"T19","obj":"http://purl.obolibrary.org/obo/HP_0002878"},{"id":"A20","pred":"hp_id","subj":"T20","obj":"http://purl.obolibrary.org/obo/HP_0001635"},{"id":"A21","pred":"hp_id","subj":"T21","obj":"http://purl.obolibrary.org/obo/HP_0100806"},{"id":"A22","pred":"hp_id","subj":"T22","obj":"http://purl.obolibrary.org/obo/HP_0031628"},{"id":"A23","pred":"hp_id","subj":"T23","obj":"http://purl.obolibrary.org/obo/HP_0100526"},{"id":"A24","pred":"hp_id","subj":"T24","obj":"http://purl.obolibrary.org/obo/HP_0000969"},{"id":"A25","pred":"hp_id","subj":"T25","obj":"http://purl.obolibrary.org/obo/HP_0033006"},{"id":"A26","pred":"hp_id","subj":"T26","obj":"http://purl.obolibrary.org/obo/HP_0000969"},{"id":"A27","pred":"hp_id","subj":"T27","obj":"http://purl.obolibrary.org/obo/HP_0040189"}],"text":"Patients with COVID-19 (who were infected by SARS-CoV-2) are reported to present with fever, dry cough, myalgia, fatigue, and diarrhea, etc. with symptoms varying somewhat with the patients' age. In some cases, the severe progression of the disease results in ALI/ARDS, respiratory failure, heart failure, sepsis, and sudden cardiac arrest within a few days [2,7]. The pathogenic examination of lung specimens from mild COVID-19 patients (who were retrospectively found to have COVID-19 at the time of lung cancer surgery) showed edema, proteinaceous exudate with globules, patchy inflammatory cellular infiltration and moderate formation of hyaline membranes [8]. In a postmortem assessment of a COVID-19 patient with severe ARDS, specimens of infected lungs demonstrated bilateral diffuse alveolar damage with edema, pneumocyte desquamation and hyaline membrane formation [9]."}