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PMC:7102560 / 1931-2688 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T8 51-54 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T26 155-163 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T27 155-159 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T28 167-214 Disease denotes Severe Acute Respiratory Syndrome Coronavirus-2 http://purl.obolibrary.org/obo/MONDO_0100096
T29 278-287 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T30 298-306 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T31 298-302 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T32 341-349 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T33 351-375 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T34 378-386 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T35 483-491 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T36 553-561 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T37 633-644 Disease denotes lymphopenia http://purl.obolibrary.org/obo/MONDO_0003783
T38 678-711 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T39 713-717 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T9 0-1 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T10 8-13 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T11 35-36 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T12 55-62 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T13 258-265 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Viruses
T14 309-312 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T15 492-495 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T16 528-540 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T2 98-101 Chemical denotes Dec http://purl.obolibrary.org/obo/CHEBI_23574|http://purl.obolibrary.org/obo/CHEBI_23580

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T9 278-287 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T10 594-599 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T11 601-610 Phenotype denotes dry cough http://purl.obolibrary.org/obo/HP_0031246
T12 612-619 Phenotype denotes dyspnea http://purl.obolibrary.org/obo/HP_0002094
T13 621-628 Phenotype denotes fatigue http://purl.obolibrary.org/obo/HP_0012378
T14 633-644 Phenotype denotes lymphopenia http://purl.obolibrary.org/obo/HP_0001888

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T25 0-102 Sentence denotes A novel human coronavirus which is a new strain of RNA viruses was recognized in Wuhan, China, in Dec.
T26 103-108 Sentence denotes 2019.
T27 109-273 Sentence denotes The novel coronavirus is now officially named SARS-CoV-2 (Severe Acute Respiratory Syndrome Coronavirus-2) by International Committee on Taxonomy of Viruses (ICTV).
T28 274-377 Sentence denotes The pneumonia caused by SARS-CoV-2 has been recently identified as COVID-19 (coronavirus disease 2019).
T29 378-757 Sentence denotes COVID-19 spread quickly across Hubei Province and other regions of China,1 , 2 also the global alert for COVID-19 has been issued by the World Health Organization (WHO).1 , 2 COVID-19 could induce symptoms including fever, dry cough, dyspnea, fatigue and lymphopenia in patients, and might result in severe acute respiratory syndrome (SARS) and even death in severe cases.1, 2, 3

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
75 8-25 Species denotes human coronavirus Tax:694448
76 113-130 Species denotes novel coronavirus Tax:2697049
77 155-165 Species denotes SARS-CoV-2 Tax:2697049
78 167-214 Species denotes Severe Acute Respiratory Syndrome Coronavirus-2 Tax:2697049
79 298-308 Species denotes SARS-CoV-2 Tax:2697049
80 648-656 Species denotes patients Tax:9606
81 278-287 Disease denotes pneumonia MESH:D011014
82 351-375 Disease denotes coronavirus disease 2019 MESH:C000657245
83 378-386 Disease denotes COVID-19 MESH:C000657245
84 483-491 Disease denotes COVID-19 MESH:C000657245
85 553-561 Disease denotes COVID-19 MESH:C000657245
86 594-599 Disease denotes fever MESH:D005334
87 601-610 Disease denotes dry cough MESH:D003371
88 612-619 Disease denotes dyspnea MESH:D004417
89 621-628 Disease denotes fatigue MESH:D005221
90 633-644 Disease denotes lymphopenia MESH:D008231
91 728-733 Disease denotes death MESH:D003643

2_test

Id Subject Object Predicate Lexical cue
32171867-31978945-61116990 451-452 31978945 denotes 1
32171867-31986264-61116991 455-456 31986264 denotes 2
32171867-31978945-61116992 547-548 31978945 denotes 1
32171867-31986264-61116993 551-552 31986264 denotes 2
32171867-31978945-61116994 750-751 31978945 denotes 1
32171867-31986264-61116995 753-754 31986264 denotes 2
32171867-32007143-61116996 756-757 32007143 denotes 3