PMC:7102560 / 1918-3873
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T8 | 64-67 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T26 | 168-176 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T27 | 168-172 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T28 | 180-227 | Disease | denotes | Severe Acute Respiratory Syndrome Coronavirus-2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T29 | 291-300 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T30 | 311-319 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T31 | 311-315 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T32 | 354-362 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T33 | 364-388 | Disease | denotes | coronavirus disease 2019 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T34 | 391-399 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T35 | 496-504 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T36 | 566-574 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T37 | 646-657 | Disease | denotes | lymphopenia | http://purl.obolibrary.org/obo/MONDO_0003783 |
| T38 | 691-724 | Disease | denotes | severe acute respiratory syndrome | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T39 | 726-730 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T40 | 771-779 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T41 | 771-775 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T42 | 899-903 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T43 | 938-942 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T44 | 1059-1067 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T45 | 1059-1063 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T46 | 1303-1311 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T47 | 1312-1321 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T48 | 1346-1354 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T49 | 1346-1350 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T50 | 1433-1441 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T51 | 1552-1560 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T52 | 1561-1570 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T53 | 1621-1629 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T54 | 1621-1625 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T55 | 1681-1689 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T56 | 1774-1782 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T57 | 1774-1778 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T58 | 1855-1863 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T59 | 1855-1859 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T60 | 1931-1939 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T61 | 1931-1935 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T9 | 13-14 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T10 | 21-26 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T11 | 48-49 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T12 | 68-75 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
| T13 | 271-278 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | Viruses |
| T14 | 322-325 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T15 | 505-508 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T16 | 541-553 | http://purl.obolibrary.org/obo/OBI_0000245 | denotes | Organization |
| T17 | 952-957 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T18 | 958-963 | http://purl.obolibrary.org/obo/CLO_0053799 | denotes | 4 , 5 |
| T19 | 1041-1047 | http://purl.obolibrary.org/obo/NCBITaxon_33208 | denotes | animal |
| T20 | 1106-1111 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T21 | 1125-1131 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | humans |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T2 | 111-114 | Chemical | denotes | Dec | http://purl.obolibrary.org/obo/CHEBI_23574|http://purl.obolibrary.org/obo/CHEBI_23580 |
| T4 | 797-801 | Chemical | denotes | beta | http://purl.obolibrary.org/obo/CHEBI_10545 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T9 | 291-300 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T10 | 607-612 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
| T11 | 614-623 | Phenotype | denotes | dry cough | http://purl.obolibrary.org/obo/HP_0031246 |
| T12 | 625-632 | Phenotype | denotes | dyspnea | http://purl.obolibrary.org/obo/HP_0002094 |
| T13 | 634-641 | Phenotype | denotes | fatigue | http://purl.obolibrary.org/obo/HP_0012378 |
| T14 | 646-657 | Phenotype | denotes | lymphopenia | http://purl.obolibrary.org/obo/HP_0001888 |
| T15 | 1312-1321 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T16 | 1561-1570 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T24 | 0-12 | Sentence | denotes | Introduction |
| T25 | 13-115 | Sentence | denotes | A novel human coronavirus which is a new strain of RNA viruses was recognized in Wuhan, China, in Dec. |
| T26 | 116-121 | Sentence | denotes | 2019. |
| T27 | 122-286 | Sentence | denotes | The novel coronavirus is now officially named SARS-CoV-2 (Severe Acute Respiratory Syndrome Coronavirus-2) by International Committee on Taxonomy of Viruses (ICTV). |
| T28 | 287-390 | Sentence | denotes | The pneumonia caused by SARS-CoV-2 has been recently identified as COVID-19 (coronavirus disease 2019). |
| T29 | 391-770 | Sentence | denotes | COVID-19 spread quickly across Hubei Province and other regions of China,1 , 2 also the global alert for COVID-19 has been issued by the World Health Organization (WHO).1 , 2 COVID-19 could induce symptoms including fever, dry cough, dyspnea, fatigue and lymphopenia in patients, and might result in severe acute respiratory syndrome (SARS) and even death in severe cases.1, 2, 3 |
| T30 | 771-1132 | Sentence | denotes | SARS-CoV-2 belongs to the beta-coronavirus 2b lineage in the phylogenetic tree and shares ∼80% identity sequencing with the Bat SARS-like coronavirus and the original SARS epidemic virus.4 , 5 Currently, it remains to be determined the origins and possible intermediate animal vectors of SARS-CoV-2, as well as the mechanism that this virus spread among humans. |
| T31 | 1133-1391 | Sentence | denotes | Despite many reports have characterized the clinical, epidemiological, laboratory, and radiological features, as well as treatment and clinical outcomes of patients with COVID-19 pneumonia, the information of the SARS-CoV-2 reactivation remains not reported. |
| T32 | 1392-1469 | Sentence | denotes | The curative and eradicative therapy for COVID-19 is not currently available. |
| T33 | 1470-1657 | Sentence | denotes | Urgent questions that need to be addressed promptly include whether patients with COVID-19 pneumonia will reactivate, and whether risk factors predict SARS-CoV-2 reactivation in patients. |
| T34 | 1658-1806 | Sentence | denotes | To prevent and control COVID-19 reactivation, we retrospectively collected and analyzed detailed clinical data from SARS-CoV-2 reactivated patients. |
| T35 | 1807-1955 | Sentence | denotes | In the study, we presented clinical features of SARS-CoV-2 reactivated patients and discussed the potential risk factors of SARS-CoV-2 reactivation. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 75 | 21-38 | Species | denotes | human coronavirus | Tax:694448 |
| 76 | 126-143 | Species | denotes | novel coronavirus | Tax:2697049 |
| 77 | 168-178 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 78 | 180-227 | Species | denotes | Severe Acute Respiratory Syndrome Coronavirus-2 | Tax:2697049 |
| 79 | 311-321 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 80 | 661-669 | Species | denotes | patients | Tax:9606 |
| 81 | 291-300 | Disease | denotes | pneumonia | MESH:D011014 |
| 82 | 364-388 | Disease | denotes | coronavirus disease 2019 | MESH:C000657245 |
| 83 | 391-399 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 84 | 496-504 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 85 | 566-574 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 86 | 607-612 | Disease | denotes | fever | MESH:D005334 |
| 87 | 614-623 | Disease | denotes | dry cough | MESH:D003371 |
| 88 | 625-632 | Disease | denotes | dyspnea | MESH:D004417 |
| 89 | 634-641 | Disease | denotes | fatigue | MESH:D005221 |
| 90 | 646-657 | Disease | denotes | lymphopenia | MESH:D008231 |
| 91 | 741-746 | Disease | denotes | death | MESH:D003643 |
| 110 | 771-781 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 111 | 895-920 | Species | denotes | Bat SARS-like coronavirus | Tax:1508227 |
| 112 | 1059-1069 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 113 | 1125-1131 | Species | denotes | humans | Tax:9606 |
| 114 | 1289-1297 | Species | denotes | patients | Tax:9606 |
| 115 | 1346-1356 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 116 | 1538-1546 | Species | denotes | patients | Tax:9606 |
| 117 | 1621-1631 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 118 | 1648-1656 | Species | denotes | patients | Tax:9606 |
| 119 | 1774-1784 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 120 | 1797-1805 | Species | denotes | patients | Tax:9606 |
| 121 | 1855-1865 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 122 | 1878-1886 | Species | denotes | patients | Tax:9606 |
| 123 | 1931-1941 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 124 | 1303-1321 | Disease | denotes | COVID-19 pneumonia | MESH:C000657245 |
| 125 | 1433-1441 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 126 | 1552-1570 | Disease | denotes | COVID-19 pneumonia | MESH:C000657245 |
| 127 | 1681-1689 | Disease | denotes | COVID-19 | MESH:C000657245 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32171867-31978945-61116990 | 464-465 | 31978945 | denotes | 1 |
| 32171867-31986264-61116991 | 468-469 | 31986264 | denotes | 2 |
| 32171867-31978945-61116992 | 560-561 | 31978945 | denotes | 1 |
| 32171867-31986264-61116993 | 564-565 | 31986264 | denotes | 2 |
| 32171867-31978945-61116994 | 763-764 | 31978945 | denotes | 1 |
| 32171867-31986264-61116995 | 766-767 | 31986264 | denotes | 2 |
| 32171867-32007143-61116996 | 769-770 | 32007143 | denotes | 3 |
| 32171867-32007145-61116997 | 958-959 | 32007145 | denotes | 4 |