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PMC:7102556 / 7681-8638 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
153 26-34 Species denotes SARS-CoV Tax:694009
154 39-47 Species denotes MERS-CoV Tax:1335626
155 564-569 Species denotes HIV-1 Tax:11676

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T33 103-115 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T34 142-154 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T35 481-494 Body_part denotes cell membrane http://purl.org/sig/ont/fma/fma63841
T36 481-485 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T37 564-567 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T38 626-639 Body_part denotes cell membrane http://purl.org/sig/ont/fma/fma63841
T39 626-630 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T40 701-714 Body_part denotes cell membrane http://purl.org/sig/ont/fma/fma63841
T41 701-705 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T42 866-871 Body_part denotes helix http://purl.org/sig/ont/fma/fma60992
T43 904-918 Body_part denotes cell membranes http://purl.org/sig/ont/fma/fma63841
T44 904-908 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T15 866-871 Body_part denotes helix http://purl.obolibrary.org/obo/UBERON_0002488

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T22 26-34 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T68 178-180 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T69 183-185 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T70 190-192 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T71 190-192 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T72 255-257 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T73 273-278 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T74 381-383 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T75 381-383 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T76 475-480 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T77 481-485 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T78 486-494 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T79 594-596 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T80 626-630 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T81 631-639 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T82 652-659 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T83 681-683 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T84 681-683 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T85 701-705 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T86 706-714 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T87 768-769 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T88 862-865 http://purl.obolibrary.org/obo/CLO_0001602 denotes a 6
T89 862-865 http://purl.obolibrary.org/obo/CLO_0001603 denotes a 6
T90 862-865 http://purl.obolibrary.org/obo/CLO_0050248 denotes a 6
T91 862-865 http://purl.obolibrary.org/obo/CLO_0052463 denotes a 6
T92 894-899 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T93 904-908 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T94 909-918 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membranes

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T34 103-115 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T35 142-154 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T36 190-192 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T37 381-383 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T38 652-659 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T39 681-683 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T33 303-310 http://purl.obolibrary.org/obo/GO_0009606 denotes tropism
T34 486-501 http://purl.obolibrary.org/obo/GO_0061025 denotes membrane fusion
T35 631-651 http://purl.obolibrary.org/obo/GO_0061025 denotes membrane, the fusion

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T51 0-139 Sentence denotes The cellular receptors of SARS-CoV and MERS-CoV have been identified [25,26], and the virion spike (S) glycoprotein, was also well studied.
T52 140-254 Sentence denotes S glycoprotein includes two subunits [27], S1 and S2, resulting from cleavage of the one precursor into two parts.
T53 255-502 Sentence denotes S1 determines the virus host range and cellular tropism with the key functional domain - receptor binding domain (RBD), while S2 contains two tandem domains, heptad repeats 1 (HR1) and heptad repeats 2 (HR2), to mediate virus-cell membrane fusion.
T54 503-957 Sentence denotes It is believed that the fusion process is similar to that of HIV-1 [28]; for example, when S1 binds to the receptor on the cell membrane, the fusion peptide at the N terminus of S2 inserts into the cell membrane, then three HR1s attach to each other in parallel as a trimer, followed by binding of three HR2s separately onto the outside of the trimer to form a 6-helix bundle, thus bringing virus and cell membranes close to each other to trigger fusion.

2_test

Id Subject Object Predicate Lexical cue
32017984-23486063-69697736 70-72 23486063 denotes 25
32017984-14647384-69697737 73-75 14647384 denotes 26
32017984-24766432-69697738 178-180 24766432 denotes 27
32017984-22970321-69697739 571-573 22970321 denotes 28