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PMC:7100515 / 4077-5155 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T16 30-37 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T17 96-103 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T18 333-340 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T19 344-349 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T20 385-390 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T21 454-462 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T22 497-504 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T23 505-513 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T24 600-608 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T25 646-654 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T26 680-687 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T27 807-814 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T28 815-823 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T29 896-899 Body_part denotes Gag http://purl.org/sig/ont/fma/fma63011
T30 928-935 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T31 962-969 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T42 17-25 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T43 83-91 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T44 208-211 Disease denotes NTD http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075
T46 544-548 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T47 592-596 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T48 854-858 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T45 58-59 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T46 109-110 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T47 123-125 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T48 153-155 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T49 153-155 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T50 157-165 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T51 254-261 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T52 309-310 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T53 344-349 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T54 380-384 http://purl.obolibrary.org/obo/CLO_0050894 denotes 293T
T55 380-384 http://purl.obolibrary.org/obo/CLO_0051650 denotes 293T
T56 380-384 http://purl.obolibrary.org/obo/CLO_0052052 denotes 293T
T57 385-390 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T58 422-423 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T59 424-429 http://purl.obolibrary.org/obo/CLO_0007836 denotes Mouse
T60 477-481 http://purl.obolibrary.org/obo/NCBITaxon_9925 denotes goat
T61 549-551 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T62 570-575 http://purl.obolibrary.org/obo/CLO_0007836 denotes Mouse
T63 597-599 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T64 612-617 http://purl.obolibrary.org/obo/CLO_0007836 denotes Mouse
T65 643-645 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T66 643-645 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T67 739-740 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T68 787-791 http://purl.obolibrary.org/obo/NCBITaxon_9925 denotes goat
T69 859-861 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T70 1059-1060 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T31 30-37 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T32 96-103 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T33 153-155 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T34 182-184 Chemical denotes TM http://purl.obolibrary.org/obo/CHEBI_55460|http://purl.obolibrary.org/obo/CHEBI_74861
T36 254-261 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T37 333-340 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T38 451-453 Chemical denotes M2 http://purl.obolibrary.org/obo/CHEBI_34827|http://purl.obolibrary.org/obo/CHEBI_51112
T40 497-504 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T41 643-645 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T42 680-687 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T43 770-772 Chemical denotes M2 http://purl.obolibrary.org/obo/CHEBI_34827|http://purl.obolibrary.org/obo/CHEBI_51112
T45 807-814 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T46 928-935 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T47 962-969 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T6 157-172 http://purl.obolibrary.org/obo/GO_0061025 denotes membrane fusion

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T31 58-122 Sentence denotes a Diagram of full-length SARS-CoV-2 S protein with a 3xFLAG tag.
T32 123-373 Sentence denotes S1, receptor-binding subunit; S2, membrane fusion subunit; TM, transmembrane domain; NTD, N-terminal domain; pFP, potential fusion peptide; HR-N, heptad repeat-N; HR-C, heptad repeat-C; b–f Detection of CoVs S protein in cells lysate by western blot.
T33 374-984 Sentence denotes Mock, 293T cells transfected with empty vector. b Mouse monoclonal anti-FLAG M2 antibody; c Polyclonal goat anti-MHV-A59 S protein antibody AO4. d Polyclonal rabbit anti-SARS S1 antibodies T62. e Mouse monoclonal anti-SARS S1 antibody. f Mouse monoclonal anti-MERS-CoV S2 antibody. g–j Detection of CoVs S protein in pseudovirions by western blot.Gag-p24 served as a loading control. g Anti-FLAG M2. h Polyclonal goat anti-MHV-A59 S protein antibody AO4. i Polyclonal rabbit anti-SARS S1 antibodies T62. j Polyclonal anti-Gag-p24 antibodies. uncleaved S protein, about 180 kDa; cleaved S protein, about 90 kDa.
T34 985-1030 Sentence denotes Experiments were done twice and one is shown.
T35 1031-1078 Sentence denotes Source data are provided as a Source Data file.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
135 17-27 Species denotes SARS-CoV-2 Tax:2697049
152 725-728 Gene denotes p24 Gene:140767
153 896-899 Gene denotes Gag Gene:155030
154 900-903 Gene denotes p24 Gene:140767
155 94-95 Gene denotes S Gene:43740568
156 721-724 Gene denotes Gag Gene:155030
157 83-93 Species denotes SARS-CoV-2 Tax:2697049
158 326-330 Species denotes CoVs Tax:11118
159 673-677 Species denotes CoVs Tax:11118
160 424-429 Species denotes Mouse Tax:10090
161 487-490 Species denotes MHV Tax:11138
162 570-575 Species denotes Mouse Tax:10090
163 612-617 Species denotes Mouse Tax:10090
164 634-642 Species denotes MERS-CoV Tax:1335626
165 797-800 Species denotes MHV Tax:11138
166 263-267 Disease denotes HR-N MESH:D001919
167 380-384 CellLine denotes 293T CVCL:0063