PMC:7100515 / 36107-37386
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T302 | 0-4 | Body_part | denotes | Cell | http://purl.org/sig/ont/fma/fma68646 |
| T303 | 27-33 | Body_part | denotes | kidney | http://purl.org/sig/ont/fma/fma7203 |
| T304 | 34-38 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T305 | 125-140 | Body_part | denotes | epithelial cell | http://purl.org/sig/ont/fma/fma66768 |
| T306 | 136-140 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T307 | 169-193 | Body_part | denotes | alveolar epithelial cell | http://purl.org/sig/ont/fma/fma62499 |
| T308 | 189-193 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T309 | 222-233 | Body_part | denotes | fibroblasts | http://purl.org/sig/ont/fma/fma63877 |
| T310 | 247-251 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T311 | 252-258 | Body_part | denotes | tissue | http://purl.org/sig/ont/fma/fma9637 |
| T312 | 297-303 | Body_part | denotes | kidney | http://purl.org/sig/ont/fma/fma7203 |
| T313 | 304-308 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T314 | 386-390 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T315 | 470-474 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T316 | 493-503 | Body_part | denotes | hepatocyte | http://purl.org/sig/ont/fma/fma14515 |
| T317 | 604-610 | Body_part | denotes | embryo | http://purl.org/sig/ont/fma/fma296970 |
| T318 | 611-621 | Body_part | denotes | fibroblast | http://purl.org/sig/ont/fma/fma63877 |
| T319 | 622-627 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T320 | 659-666 | Body_part | denotes | fetuses | http://purl.org/sig/ont/fma/fma63919 |
| T321 | 705-710 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T322 | 778-784 | Body_part | denotes | kidney | http://purl.org/sig/ont/fma/fma7203 |
| T323 | 785-796 | Body_part | denotes | fibroblasts | http://purl.org/sig/ont/fma/fma63877 |
| T324 | 854-859 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T325 | 990-995 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T326 | 1058-1063 | Body_part | denotes | serum | http://purl.org/sig/ont/fma/fma63083 |
| T327 | 1179-1185 | Body_part | denotes | kidney | http://purl.org/sig/ont/fma/fma7203 |
| T328 | 1186-1190 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T15 | 27-33 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
| T16 | 247-251 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T17 | 252-258 | Body_part | denotes | tissue | http://purl.obolibrary.org/obo/UBERON_0000479 |
| T18 | 297-303 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
| T19 | 604-610 | Body_part | denotes | embryo | http://purl.obolibrary.org/obo/UBERON_0000922 |
| T20 | 778-784 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
| T21 | 1058-1063 | Body_part | denotes | serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
| T22 | 1179-1185 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T341 | 367-385 | Disease | denotes | cervical carcinoma | http://purl.obolibrary.org/obo/MONDO_0005131 |
| T342 | 376-385 | Disease | denotes | carcinoma | http://purl.obolibrary.org/obo/MONDO_0004993 |
| T343 | 460-469 | Disease | denotes | carcinoma | http://purl.obolibrary.org/obo/MONDO_0004993 |
| T344 | 628-630 | Disease | denotes | RS | http://purl.obolibrary.org/obo/MONDO_0010725 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T761 | 0-10 | http://purl.obolibrary.org/obo/CLO_0000031 | denotes | Cell lines |
| T762 | 11-16 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | Human |
| T763 | 17-33 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | embryonic kidney |
| T764 | 34-43 | http://purl.obolibrary.org/obo/CLO_0000031 | denotes | cell line |
| T765 | 44-47 | http://purl.obolibrary.org/obo/CLO_0001230 | denotes | 293 |
| T766 | 44-47 | http://purl.obolibrary.org/obo/CLO_0037237 | denotes | 293 |
| T767 | 44-47 | http://purl.obolibrary.org/obo/CLO_0050903 | denotes | 293 |
| T768 | 44-47 | http://purl.obolibrary.org/obo/CLO_0054249 | denotes | 293 |
| T769 | 44-47 | http://purl.obolibrary.org/obo/CLO_0054250 | denotes | 293 |
| T770 | 44-47 | http://purl.obolibrary.org/obo/CLO_0054251 | denotes | 293 |
| T771 | 44-47 | http://purl.obolibrary.org/obo/CLO_0054252 | denotes | 293 |
| T772 | 64-68 | http://purl.obolibrary.org/obo/CLO_0050894 | denotes | 293T |
| T773 | 64-68 | http://purl.obolibrary.org/obo/CLO_0051650 | denotes | 293T |
| T774 | 64-68 | http://purl.obolibrary.org/obo/CLO_0052052 | denotes | 293T |
| T775 | 112-117 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T776 | 118-124 | http://purl.obolibrary.org/obo/UBERON_0001005 | denotes | airway |
| T777 | 125-135 | http://purl.obolibrary.org/obo/CL_0000066 | denotes | epithelial |
| T778 | 136-145 | http://purl.obolibrary.org/obo/CLO_0000031 | denotes | cell line |
| T779 | 146-151 | http://purl.obolibrary.org/obo/CLO_0002192 | denotes | Calu3 |
| T780 | 163-168 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T781 | 178-188 | http://purl.obolibrary.org/obo/CL_0000066 | denotes | epithelial |
| T782 | 189-198 | http://purl.obolibrary.org/obo/CLO_0000031 | denotes | cell line |
| T783 | 199-203 | http://purl.obolibrary.org/obo/CLO_0001601 | denotes | A549 |
| T784 | 199-203 | http://purl.obolibrary.org/obo/CLO_0050025 | denotes | A549 |
| T785 | 199-203 | http://purl.obolibrary.org/obo/CLO_0054264 | denotes | A549 |
| T786 | 199-203 | http://purl.obolibrary.org/obo/CLO_0054265 | denotes | A549 |
| T787 | 199-203 | http://purl.obolibrary.org/obo/CLO_0054266 | denotes | A549 |
| T788 | 199-203 | http://purl.obolibrary.org/obo/CLO_0054267 | denotes | A549 |
| T789 | 199-203 | http://purl.obolibrary.org/obo/CLO_0054268 | denotes | A549 |
| T790 | 199-203 | http://purl.obolibrary.org/obo/CLO_0054269 | denotes | A549 |
| T791 | 216-221 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T792 | 222-233 | http://purl.obolibrary.org/obo/CL_0000057 | denotes | fibroblasts |
| T793 | 247-251 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T794 | 247-251 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T795 | 259-263 | http://purl.obolibrary.org/obo/CLO_0007865 | denotes | MRC5 |
| T796 | 259-263 | http://purl.obolibrary.org/obo/CLO_0050055 | denotes | MRC5 |
| T797 | 290-296 | http://purl.obolibrary.org/obo/NCBITaxon_9479 | denotes | monkey |
| T798 | 297-303 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | kidney |
| T799 | 297-303 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | kidney |
| T800 | 297-303 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | kidney |
| T801 | 304-313 | http://purl.obolibrary.org/obo/CLO_0000031 | denotes | cell line |
| T802 | 314-318 | http://purl.obolibrary.org/obo/CLO_0009524 | denotes | Vero |
| T803 | 314-318 | http://purl.obolibrary.org/obo/CLO_0050515 | denotes | Vero |
| T804 | 338-342 | http://purl.obolibrary.org/obo/CLO_0009524 | denotes | Vero |
| T805 | 338-342 | http://purl.obolibrary.org/obo/CLO_0050515 | denotes | Vero |
| T806 | 361-366 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T807 | 367-395 | http://www.ebi.ac.uk/cellline#cervical_carcinoma_cell_line | denotes | cervical carcinoma cell line |
| T808 | 396-400 | http://purl.obolibrary.org/obo/CLO_0003684 | denotes | HeLa |
| T809 | 396-400 | http://purl.obolibrary.org/obo/CLO_0050910 | denotes | HeLa |
| T810 | 454-459 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | Human |
| T811 | 470-479 | http://purl.obolibrary.org/obo/CLO_0000031 | denotes | cell line |
| T812 | 504-508 | http://purl.obolibrary.org/obo/CLO_0009989 | denotes | Huh7 |
| T813 | 604-610 | http://purl.obolibrary.org/obo/UBERON_0000922 | denotes | embryo |
| T814 | 611-621 | http://purl.obolibrary.org/obo/CL_0000057 | denotes | fibroblast |
| T815 | 622-627 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T816 | 628-630 | http://purl.obolibrary.org/obo/CLO_0008882 | denotes | RS |
| T817 | 692-695 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
| T818 | 705-710 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T819 | 741-746 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T820 | 753-756 | http://purl.obolibrary.org/obo/CLO_0001230 | denotes | 293 |
| T821 | 753-756 | http://purl.obolibrary.org/obo/CLO_0037237 | denotes | 293 |
| T822 | 753-756 | http://purl.obolibrary.org/obo/CLO_0050903 | denotes | 293 |
| T823 | 753-756 | http://purl.obolibrary.org/obo/CLO_0054249 | denotes | 293 |
| T824 | 753-756 | http://purl.obolibrary.org/obo/CLO_0054250 | denotes | 293 |
| T825 | 753-756 | http://purl.obolibrary.org/obo/CLO_0054251 | denotes | 293 |
| T826 | 753-756 | http://purl.obolibrary.org/obo/CLO_0054252 | denotes | 293 |
| T827 | 770-777 | http://purl.obolibrary.org/obo/NCBITaxon_10026 | denotes | hamster |
| T828 | 778-784 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | kidney |
| T829 | 778-784 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | kidney |
| T830 | 778-784 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | kidney |
| T831 | 785-796 | http://purl.obolibrary.org/obo/CL_0000057 | denotes | fibroblasts |
| T832 | 827-832 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T833 | 849-859 | http://purl.obolibrary.org/obo/CLO_0054283 | denotes | HeLa cells |
| T834 | 849-859 | http://purl.obolibrary.org/obo/CLO_0054285 | denotes | HeLa cells |
| T835 | 849-859 | http://purl.obolibrary.org/obo/CLO_0054286 | denotes | HeLa cells |
| T836 | 849-859 | http://purl.obolibrary.org/obo/CLO_0054287 | denotes | HeLa cells |
| T837 | 849-859 | http://purl.obolibrary.org/obo/CLO_0054288 | denotes | HeLa cells |
| T838 | 849-859 | http://purl.obolibrary.org/obo/CLO_0054289 | denotes | HeLa cells |
| T839 | 849-853 | http://purl.obolibrary.org/obo/CLO_0003684 | denotes | HeLa |
| T840 | 849-853 | http://purl.obolibrary.org/obo/CLO_0050910 | denotes | HeLa |
| T841 | 890-895 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T842 | 902-906 | http://purl.obolibrary.org/obo/CLO_0003684 | denotes | HeLa |
| T843 | 902-906 | http://purl.obolibrary.org/obo/CLO_0050910 | denotes | HeLa |
| T844 | 990-995 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T845 | 1171-1178 | http://purl.obolibrary.org/obo/NCBITaxon_9479 | denotes | monkeys |
| T846 | 1179-1185 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | kidney |
| T847 | 1179-1185 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | kidney |
| T848 | 1179-1185 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | kidney |
| T849 | 1186-1195 | http://purl.obolibrary.org/obo/CLO_0000031 | denotes | cell line |
| T850 | 1196-1199 | http://purl.obolibrary.org/obo/CLO_0050167 | denotes | LLC |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T288 | 91-98 | Chemical | denotes | antigen | http://purl.obolibrary.org/obo/CHEBI_59132 |
| T289 | 206-209 | Chemical | denotes | CCL | http://purl.obolibrary.org/obo/CHEBI_3478 |
| T290 | 266-269 | Chemical | denotes | CCL | http://purl.obolibrary.org/obo/CHEBI_3478 |
| T291 | 348-351 | Chemical | denotes | CCL | http://purl.obolibrary.org/obo/CHEBI_3478 |
| T292 | 402-405 | Chemical | denotes | CCL | http://purl.obolibrary.org/obo/CHEBI_3478 |
| T293 | 444-446 | Chemical | denotes | VA | http://purl.obolibrary.org/obo/CHEBI_75008 |
| T294 | 628-630 | Chemical | denotes | RS | http://purl.obolibrary.org/obo/CHEBI_73819 |
| T295 | 1077-1087 | Chemical | denotes | penicillin | http://purl.obolibrary.org/obo/CHEBI_17334|http://purl.obolibrary.org/obo/CHEBI_51356 |
| T297 | 1096-1108 | Chemical | denotes | streptomycin | http://purl.obolibrary.org/obo/CHEBI_17076|http://purl.obolibrary.org/obo/CHEBI_58007 |
| T299 | 1206-1209 | Chemical | denotes | CCL | http://purl.obolibrary.org/obo/CHEBI_3478 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T76 | 649-658 | http://purl.obolibrary.org/obo/GO_0007565 | denotes | gestation |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T6 | 376-385 | Phenotype | denotes | carcinoma | http://purl.obolibrary.org/obo/HP_0030731 |
| T7 | 460-469 | Phenotype | denotes | carcinoma | http://purl.obolibrary.org/obo/HP_0030731 |
LitCovid-PD-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glyco_epitope_db_id |
|---|---|---|---|---|---|
| T1 | 89-98 | GlycoEpitope | denotes | T-antigen | http://www.glycoepitope.jp/epitopes/EP0020 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T262 | 0-10 | Sentence | denotes | Cell lines |
| T263 | 11-453 | Sentence | denotes | Human embryonic kidney cell line 293 (#CRL-1573) and 293T expressing the SV40 T-antigen (#CRL-3216), human airway epithelial cell line Calu3 (#HTB-55), human alveolar epithelial cell line A549 (#CCL-185), human fibroblasts derived from lung tissue MRC5 (#CCL-171), African green monkey kidney cell line Vero E6 (#CRL-1586) and Vero 81 (#CCL-81), and human cervical carcinoma cell line HeLa(#CCL-2) were obtained from ATCC (Manassas, VA, USA). |
| T264 | 454-599 | Sentence | denotes | Human carcinoma cell line derived from hepatocyte Huh7 was kindly provided by Dr. Wei Yang (Chinese Academy of Medical Sciences, Beijing, China). |
| T265 | 600-696 | Sentence | denotes | Bat embryo fibroblast cells RS were isolated mid-gestation fetuses from Rhinolophus sinicus bat. |
| T266 | 697-979 | Sentence | denotes | HEK 239 cells stably expressing recombinant human ACE2 (293/hACE2), baby hamster kidney fibroblasts stably expressing recombinant human APN (BHK/hAPN), HeLa cells stably expressing recombinant human DPP4 (HeLa/hDPP4) were established in our lab by overexpression of these receptors. |
| T267 | 980-1163 | Sentence | denotes | All above cells were maintained in Dulbecco’s MEM containing 10% fetal bovine serum and 100 unit penicillin, 100 μg streptomycin, and 0.25 μg Fungizone (1% PSF, Gibco) per milliliter. |
| T268 | 1164-1279 | Sentence | denotes | Rhesus monkeys kidney cell line LLC-MK2 (#CCL-7) from ATCC was maintained in Opti-MEM containing 10% FBS and 1%PSF. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 1508 | 402-407 | Gene | denotes | CCL-2 | Gene:6347 |
| 1509 | 747-751 | Gene | denotes | ACE2 | Gene:59272 |
| 1510 | 757-762 | Gene | denotes | hACE2 | Gene:59272 |
| 1511 | 833-836 | Gene | denotes | APN | Gene:290 |
| 1512 | 842-846 | Gene | denotes | hAPN | Gene:290 |
| 1513 | 896-900 | Gene | denotes | DPP4 | Gene:1803 |
| 1514 | 907-912 | Gene | denotes | hDPP4 | Gene:1803 |
| 1515 | 1136-1139 | Gene | denotes | PSF | Gene:3490 |
| 1516 | 1206-1211 | Gene | denotes | CCL-7 | Gene:714751 |
| 1517 | 1275-1278 | Gene | denotes | PSF | Gene:3490 |
| 1518 | 11-16 | Species | denotes | Human | Tax:9606 |
| 1519 | 112-117 | Species | denotes | human | Tax:9606 |
| 1520 | 163-168 | Species | denotes | human | Tax:9606 |
| 1521 | 216-221 | Species | denotes | human | Tax:9606 |
| 1522 | 276-296 | Species | denotes | African green monkey | Tax:9534 |
| 1523 | 361-366 | Species | denotes | human | Tax:9606 |
| 1524 | 454-459 | Species | denotes | Human | Tax:9606 |
| 1525 | 672-691 | Species | denotes | Rhinolophus sinicus | Tax:89399 |
| 1526 | 741-746 | Species | denotes | human | Tax:9606 |
| 1527 | 770-777 | Species | denotes | hamster | Tax:10034 |
| 1528 | 827-832 | Species | denotes | human | Tax:9606 |
| 1529 | 890-895 | Species | denotes | human | Tax:9606 |
| 1530 | 1164-1178 | Species | denotes | Rhesus monkeys | Tax:9544 |
| 1531 | 1015-1029 | Chemical | denotes | Dulbecco’s MEM | |
| 1532 | 1077-1087 | Chemical | denotes | penicillin | MESH:D010406 |
| 1533 | 1096-1108 | Chemical | denotes | streptomycin | MESH:D013307 |
| 1534 | 1122-1131 | Chemical | denotes | Fungizone | MESH:D000666 |
| 1535 | 1241-1249 | Chemical | denotes | Opti-MEM | |
| 1536 | 17-33 | Disease | denotes | embryonic kidney | MESH:D007674 |
| 1537 | 367-385 | Disease | denotes | cervical carcinoma | MESH:D002583 |
| 1538 | 460-469 | Disease | denotes | carcinoma | MESH:D009369 |
| 1539 | 64-68 | CellLine | denotes | 293T | CVCL:0063 |
| 1540 | 199-203 | CellLine | denotes | A549 | CVCL:0023 |
| 1541 | 259-263 | CellLine | denotes | MRC5 | CVCL:0440 |
| 1542 | 319-321 | CellLine | denotes | E6 | CVCL:4582 |
| 1543 | 396-400 | CellLine | denotes | HeLa | CVCL:0030 |
| 1544 | 504-508 | CellLine | denotes | Huh7 | CVCL:0336 |
| 1545 | 697-704 | CellLine | denotes | HEK 239 | CVCL:L687 |
| 1546 | 849-853 | CellLine | denotes | HeLa | CVCL:0030 |
| 1547 | 902-906 | CellLine | denotes | HeLa | CVCL:0030 |