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PMC:7100515 / 13652-15291 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T123 267-272 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T124 705-710 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T125 834-838 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T126 1081-1088 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T127 1157-1162 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T123 25-33 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T124 154-162 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T125 358-366 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T126 671-680 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T127 814-829 Disease denotes Viral infection http://purl.obolibrary.org/obo/MONDO_0005108
T128 820-829 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T129 883-886 Disease denotes MTT http://purl.obolibrary.org/obo/MONDO_0016757
T130 1068-1076 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T131 1260-1268 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T294 0-1 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T295 54-57 http://purl.obolibrary.org/obo/CLO_0001230 denotes 293
T296 54-57 http://purl.obolibrary.org/obo/CLO_0037237 denotes 293
T297 54-57 http://purl.obolibrary.org/obo/CLO_0050903 denotes 293
T298 54-57 http://purl.obolibrary.org/obo/CLO_0054249 denotes 293
T299 54-57 http://purl.obolibrary.org/obo/CLO_0054250 denotes 293
T300 54-57 http://purl.obolibrary.org/obo/CLO_0054251 denotes 293
T301 54-57 http://purl.obolibrary.org/obo/CLO_0054252 denotes 293
T302 125-126 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T303 129-130 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T304 201-202 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T305 231-235 http://purl.obolibrary.org/obo/CLO_0003684 denotes HeLa
T306 231-235 http://purl.obolibrary.org/obo/CLO_0050910 denotes HeLa
T307 245-248 http://purl.obolibrary.org/obo/CLO_0001230 denotes 293
T308 245-248 http://purl.obolibrary.org/obo/CLO_0037237 denotes 293
T309 245-248 http://purl.obolibrary.org/obo/CLO_0050903 denotes 293
T310 245-248 http://purl.obolibrary.org/obo/CLO_0054249 denotes 293
T311 245-248 http://purl.obolibrary.org/obo/CLO_0054250 denotes 293
T312 245-248 http://purl.obolibrary.org/obo/CLO_0054251 denotes 293
T313 245-248 http://purl.obolibrary.org/obo/CLO_0054252 denotes 293
T314 256-260 http://purl.obolibrary.org/obo/CLO_0003684 denotes HeLa
T315 256-260 http://purl.obolibrary.org/obo/CLO_0050910 denotes HeLa
T316 267-272 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T317 425-433 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T318 504-505 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T319 703-710 http://purl.obolibrary.org/obo/CLO_0001757 denotes 1 cells
T320 834-838 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T321 1147-1150 http://purl.obolibrary.org/obo/CLO_0001230 denotes 293
T322 1147-1150 http://purl.obolibrary.org/obo/CLO_0037237 denotes 293
T323 1147-1150 http://purl.obolibrary.org/obo/CLO_0050903 denotes 293
T324 1147-1150 http://purl.obolibrary.org/obo/CLO_0054249 denotes 293
T325 1147-1150 http://purl.obolibrary.org/obo/CLO_0054250 denotes 293
T326 1147-1150 http://purl.obolibrary.org/obo/CLO_0054251 denotes 293
T327 1147-1150 http://purl.obolibrary.org/obo/CLO_0054252 denotes 293
T328 1157-1162 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T329 1326-1334 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T330 1620-1621 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T114 96-101 Chemical denotes NH4Cl http://purl.obolibrary.org/obo/CHEBI_31206
T115 211-220 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222
T116 698-702 Chemical denotes 17Cl http://purl.obolibrary.org/obo/CHEBI_23116
T117 883-886 Chemical denotes MTT http://purl.obolibrary.org/obo/CHEBI_53233
T118 1081-1088 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T119 1305-1309 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T120 1391-1400 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222
T121 1420-1429 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T18 457-469 http://purl.obolibrary.org/obo/GO_0009293 denotes transduction
T19 814-829 http://purl.obolibrary.org/obo/GO_0016032 denotes Viral infection
T20 1359-1371 http://purl.obolibrary.org/obo/GO_0009293 denotes transduction

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T98 0-230 Sentence denotes a Inhibition of entry of SARS-CoV-2 S pseudovirion on 293/hACE2 by lysosomotropic agents (20 mM NH4Cl and 100 nM bafilomycin A). b Inhibition of entry of SARS-CoV, MERS-CoV, and MHV S pseudovirions by a PIKfyve inhibitor apilimod.
T99 231-409 Sentence denotes HeLa/mCEACAM, 293/hACE2, HeLa/hDPP4 cells were pretreated with different concentrations of apilimod and transduced with MHV S, SARS-CoV S, MERS-CoV S pseudovirions, respectively.
T100 410-470 Sentence denotes The luciferase activity was measured 40 h post transduction.
T101 471-514 Sentence denotes VSV-G pseudovirions were used as a control.
T102 515-586 Sentence denotes Experiments were done in triplicates and repeated at least three times.
T103 587-693 Sentence denotes One representative is shown with error bars indicating SEM. c Inhibition of MHV A59 infection by apilimod.
T104 694-813 Sentence denotes The 17Cl.1 cells were pretreated with 3, 10, 30, 100, 300 nM apilimod for 30 min and infected by MHV A59 at MOI = 0.01.
T105 814-907 Sentence denotes Viral infection and cell viability were determined by using qPCR and MTT assay, respectively.
T106 908-979 Sentence denotes Experiments were done in triplicates and repeated at least three times.
T107 980-1142 Sentence denotes One representative is shown with error bars indicating SEM. d, e Inhibition of entry of SARS-CoV-2 S protein pseudovirions by apilimod, YM201636, and tetrandrine.
T108 1143-1310 Sentence denotes HEK 293/hACE2 cells were pretreated with either apilimod (d), YM201636 (e), or tetrandrine (f), then inoculated with SARS-CoV-2 S pseudovirons in the presence of drug.
T109 1311-1372 Sentence denotes The luciferase activity were measured 40 h post transduction.
T110 1373-1430 Sentence denotes YM201636, PIKfyve inhibitor; tetrandrine, TPC2 inhibitor.
T111 1431-1506 Sentence denotes The experiments were done in triplicates and repeated at least three times.
T112 1507-1591 Sentence denotes One representative is shown with error bars indicating SEM of technical triplicates.
T113 1592-1639 Sentence denotes Source data are provided as a Source Data file.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
593 58-63 Gene denotes hACE2 Gene:59272
594 249-254 Gene denotes hACE2 Gene:59272
595 1151-1156 Gene denotes hACE2 Gene:59272
596 1415-1419 Gene denotes TPC2 Gene:219931
597 261-266 Gene denotes hDPP4 Gene:1803
598 1271-1272 Gene denotes S Gene:43740568
599 1079-1080 Gene denotes S Gene:43740568
600 36-37 Gene denotes S Gene:43740568
601 25-35 Species denotes SARS-CoV-2 Tax:2697049
602 154-162 Species denotes SARS-CoV Tax:694009
603 164-172 Species denotes MERS-CoV Tax:1335626
604 178-183 Species denotes MHV S Tax:11145
605 351-356 Species denotes MHV S Tax:11145
606 358-366 Species denotes SARS-CoV Tax:694009
607 370-378 Species denotes MERS-CoV Tax:1335626
608 1068-1078 Species denotes SARS-CoV-2 Tax:2697049
609 1260-1270 Species denotes SARS-CoV-2 Tax:2697049
610 663-666 Species denotes MHV Tax:11138
611 791-794 Species denotes MHV Tax:11138
612 96-101 Chemical denotes NH4Cl
613 113-126 Chemical denotes bafilomycin A MESH:C057620
614 883-886 Chemical denotes MTT MESH:C070243
615 1106-1114 Chemical denotes apilimod MESH:C504227
616 1116-1124 Chemical denotes YM201636 MESH:C540576
617 1130-1141 Chemical denotes tetrandrine MESH:C009438
618 1205-1213 Chemical denotes YM201636 MESH:C540576
619 1222-1233 Chemical denotes tetrandrine MESH:C009438
620 1373-1381 Chemical denotes YM201636 MESH:C540576
621 1402-1413 Chemical denotes tetrandrine MESH:C009438
622 671-680 Disease denotes infection MESH:D007239
623 779-787 Disease denotes infected MESH:D007239
624 814-829 Disease denotes Viral infection MESH:D001102
625 231-235 CellLine denotes HeLa CVCL:0030
626 256-260 CellLine denotes HeLa CVCL:0030
627 1143-1150 CellLine denotes HEK 293 CVCL:0045