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PMC:7096775 / 7333-11525 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T2 791-800 Body_part denotes Grey line http://purl.org/sig/ont/fma/fma74591
T3 2560-2569 Body_part denotes Grey line http://purl.org/sig/ont/fma/fma74591
T4 3422-3431 Body_part denotes Grey line http://purl.org/sig/ont/fma/fma74591

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T2 130-135 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T59 331-339 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T60 673-681 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T61 734-742 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T62 823-832 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T63 867-875 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T64 993-1001 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T65 1126-1134 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T66 1423-1432 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T67 1826-1834 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T68 2138-2173 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T69 2144-2173 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T70 2175-2179 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T71 2187-2195 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T72 2250-2254 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T73 2283-2287 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T74 2311-2315 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T75 2468-2476 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T76 2529-2537 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T77 2600-2609 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T78 2644-2652 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T79 3113-3121 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T80 3271-3279 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T81 3334-3342 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T82 3365-3373 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T83 3375-3408 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T84 3459-3468 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T85 3503-3511 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T86 3677-3685 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T87 3914-3923 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T88 4116-4125 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T53 84-86 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T54 99-101 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T55 282-284 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T56 287-296 http://purl.obolibrary.org/obo/CLO_0054060 denotes 10% and 2
T57 936-941 http://purl.obolibrary.org/obo/UBERON_0003101 denotes males
T58 936-941 http://www.ebi.ac.uk/efo/EFO_0000970 denotes males
T59 1343-1344 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T60 1446-1447 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T61 1617-1619 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T62 2123-2124 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T63 2667-2669 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T64 2888-2893 http://purl.obolibrary.org/obo/CLO_0050964 denotes had 1
T65 3531-3532 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T66 3597-3599 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T67 3627-3628 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T68 3829-3830 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T69 3910-3913 http://purl.obolibrary.org/obo/CLO_0001377 denotes 462
T70 4091-4093 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T62 0-19 Sentence denotes Intensive care unit
T63 20-111 Sentence denotes The proportion of ICU patients in the SPP was 20%, ranging from 18% in 2016 to 22% in 2019.
T64 112-210 Sentence denotes This was the same scale as described in two case series from Wuhan in the province of Hubei [5,6].
T65 211-383 Sentence denotes However, the case series from provinces outside of Hubei reported only 11%, 10% and 2% (one case) of ICU patients among COVID-19 cases, which is remarkably lower [9,11,12].
T66 384-549 Sentence denotes This may be attributed to the preliminary character of the outcome, as more than half of the cases were still hospitalised in these case series (Table and Figure 1).
T67 550-733 Sentence denotes Figure 1 Reported proportions of patients in intensive care and proportions of patients who were still hospitalised, five COVID-19 case series, China, January–February 2020 (n = 688)
T68 734-790 Sentence denotes COVID-19: coronavirus disease; ICU: intensive care unit.
T69 791-851 Sentence denotes Grey line: proportion of ICU in pneumonia sentinel patients.
T70 852-897 Sentence denotes Data from five COVID-19 series [5,6,9,11,12].
T71 898-1052 Sentence denotes Among ICU patients, the proportion of males and the median age were strikingly similar between COVID-19 (61% and 66 years) and SPP (61% and 67 years) [6].
T72 1053-1118 Sentence denotes However, the proportions of chronic comorbidities were different:
T73 1119-1277 Sentence denotes 28% of COVID-19 patients treated on the ICU did not have any reported comorbidity, whereas only 16% of German ICU patients were without comorbidities (Table).
T74 1279-1290 Sentence denotes Ventilation
T75 1291-1415 Sentence denotes Three case series from the province Hubei described a high rate of cases who needed ventilation (20%, 23% and 25%) [5,6,10].
T76 1416-1495 Sentence denotes German pneumonia patients had a two- to threefold lower ventilation rate of 9%.
T77 1496-1646 Sentence denotes The two case series from Shenzhen and the province Zhejiang also reported much lower ventilation rates of, respectively, 11% and 2% [9,11] (Figure 2).
T78 1647-1714 Sentence denotes The median duration of ventilation was 9 days (interquartile range:
T79 1715-1779 Sentence denotes 7–19, n = 13) for non-invasive and 17 days (interquartile range:
T80 1780-1876 Sentence denotes 12–19, n = 4) for invasive ventilation in the COVID-19 case series described by Chen et al. [5].
T81 1877-1994 Sentence denotes In contrast, the median ventilation duration (invasive and non-invasive) in SPP was only 2 days (interquartile range:
T82 1995-2009 Sentence denotes 1–4, n = 303).
T83 2010-2205 Sentence denotes The high ventilation rates and the long duration of ventilation (data from one case series) can be attributed to a high rate of acute respiratory distress syndrome (ARDS) among COVID-19 patients.
T84 2206-2301 Sentence denotes Again, the difference between Hubei (17–20% ARDS) and outside of Hubei (2–4% ARDS) is striking.
T85 2302-2347 Sentence denotes However, ARDS was observed in only 1% of SPP.
T86 2348-2528 Sentence denotes Figure 2 Reported proportions of patients on ventilation and proportions of patients who were still hospitalised, five COVID-19 case series, China, January–February 2020 (n = 734)
T87 2529-2559 Sentence denotes COVID-19: coronavirus disease.
T88 2560-2628 Sentence denotes Grey line: proportion of ventilation in pneumonia sentinel patients.
T89 2629-2671 Sentence denotes Data from five COVID-19 series [5,6,9-11].
T90 2673-2686 Sentence denotes Case fatality
T91 2687-2813 Sentence denotes The observed case fatality ratios in the described case series from Hubei (including the city of Wuhan) ranged from 4% to 12%.
T92 2814-2871 Sentence denotes Most case series outside Hubei did not report fatalities.
T93 2872-2909 Sentence denotes One case series had 1% case fatality.
T94 2910-3028 Sentence denotes However, more than two thirds of the cases reported from outside Hubei were still hospitalised at the reporting dates.
T95 3029-3149 Sentence denotes The case fatality ratio among SPP was 6%, which is within the range of the reported COVID-19 case fatalities (Figure 3).
T96 3150-3333 Sentence denotes Figure 3 Reported proportions of deceased and corresponding proportions of patients that were still hospitalised, seven COVID-19 case series, China, January–February 2020 (n = 1,087)
T97 3334-3421 Sentence denotes COVID-19: coronavirus disease; SARS-CoV: severe acute respiratory syndrome coronavirus.
T98 3422-3487 Sentence denotes Grey line: proportion of deceased in pneumonia sentinel patients.
T99 3488-3530 Sentence denotes Data from five COVID-19 series [5,6,8-12].
T100 3531-3652 Sentence denotes A study by Yang et al. described clinical courses and outcomes of 52 critically ill patients in a hospital in Wuhan [14].
T101 3653-3768 Sentence denotes Among 25 critically ill COVID-19 patients younger than 60 years, 12 died within 28 days after admission to the ICU.
T102 3769-3868 Sentence denotes Of 31 patients without chronic illnesses, 15 died, which is a comparable proportion of almost half.
T103 3869-4004 Sentence denotes In the sentinel hospitals, we identified 462 pneumonia patients who were critically ill (i.e. received intensive care and ventilation).
T104 4005-4077 Sentence denotes Of those patients, 92 were younger than 60 years, of whom 12 (13%) died.
T105 4078-4192 Sentence denotes In addition, 18 of the critically ill pneumonia patients were without chronic preconditions and four of them died.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T21 823-832 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T22 1423-1432 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T23 2144-2164 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T24 2600-2609 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T25 3459-3468 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T26 3914-3923 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T27 4116-4125 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

2_test

Id Subject Object Predicate Lexical cue
32186278-32112886-29336352 205-206 32112886 denotes 5
32186278-32404696-29336353 374-375 32404696 denotes 9
32186278-32112886-29336354 884-885 32112886 denotes 5
32186278-32404696-29336355 888-889 32404696 denotes 9
32186278-32112886-29336356 1407-1408 32112886 denotes 5
32186278-32075786-29336357 1411-1413 32075786 denotes 10
32186278-32404696-29336358 1629-1630 32404696 denotes 9
32186278-32112886-29336359 1873-1874 32112886 denotes 5
32186278-32112886-29336360 2661-2662 32112886 denotes 5
32186278-32404696-29336361 2665-2666 32404696 denotes 9
32186278-32075786-29336361 2665-2666 32075786 denotes 9
32186278-32112886-29336362 3520-3521 32112886 denotes 5
32186278-32404696-29336363 3524-3525 32404696 denotes 8
32186278-32075786-29336363 3524-3525 32075786 denotes 8
32186278-32105632-29336364 3648-3650 32105632 denotes 14

MyTest

Id Subject Object Predicate Lexical cue
32186278-32112886-29336352 205-206 32112886 denotes 5
32186278-32404696-29336353 374-375 32404696 denotes 9
32186278-32112886-29336354 884-885 32112886 denotes 5
32186278-32404696-29336355 888-889 32404696 denotes 9
32186278-32112886-29336356 1407-1408 32112886 denotes 5
32186278-32075786-29336357 1411-1413 32075786 denotes 10
32186278-32404696-29336358 1629-1630 32404696 denotes 9
32186278-32112886-29336359 1873-1874 32112886 denotes 5
32186278-32112886-29336360 2661-2662 32112886 denotes 5
32186278-32404696-29336361 2665-2666 32404696 denotes 9
32186278-32075786-29336361 2665-2666 32075786 denotes 9
32186278-32112886-29336362 3520-3521 32112886 denotes 5
32186278-32404696-29336363 3524-3525 32404696 denotes 8
32186278-32075786-29336363 3524-3525 32075786 denotes 8
32186278-32105632-29336364 3648-3650 32105632 denotes 14

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
137 42-50 Species denotes patients Tax:9606
138 316-324 Species denotes patients Tax:9606
139 331-339 Disease denotes COVID-19 MESH:C000657245
143 584-592 Species denotes patients Tax:9606
144 630-638 Species denotes patients Tax:9606
145 673-681 Disease denotes COVID-19 MESH:C000657245
147 744-763 Disease denotes coronavirus disease MESH:D018352
151 842-850 Species denotes patients Tax:9606
152 823-832 Disease denotes pneumonia MESH:D011014
153 867-875 Disease denotes COVID-19 MESH:C000657245
159 908-916 Species denotes patients Tax:9606
160 1135-1143 Species denotes patients Tax:9606
161 1233-1241 Species denotes patients Tax:9606
162 993-1001 Disease denotes COVID-19 MESH:C000657245
163 1126-1134 Disease denotes COVID-19 MESH:C000657245
174 1433-1441 Species denotes patients Tax:9606
175 2196-2204 Species denotes patients Tax:9606
176 1423-1432 Disease denotes pneumonia MESH:D011014
177 1826-1834 Disease denotes COVID-19 MESH:C000657245
178 2138-2173 Disease denotes acute respiratory distress syndrome MESH:D012128
179 2175-2179 Disease denotes ARDS MESH:D012128
180 2187-2195 Disease denotes COVID-19 MESH:C000657245
181 2250-2254 Disease denotes ARDS MESH:D012128
182 2283-2287 Disease denotes ARDS MESH:D012128
183 2311-2315 Disease denotes ARDS MESH:D012128
187 2382-2390 Species denotes patients Tax:9606
188 2425-2433 Species denotes patients Tax:9606
189 2468-2476 Disease denotes COVID-19 MESH:C000657245
191 2539-2558 Disease denotes coronavirus disease MESH:D018352
195 2619-2627 Species denotes patients Tax:9606
196 2600-2609 Disease denotes pneumonia MESH:D011014
197 2644-2652 Disease denotes COVID-19 MESH:C000657245
199 3113-3121 Disease denotes COVID-19 MESH:C000657245
202 3226-3234 Species denotes patients Tax:9606
203 3271-3279 Disease denotes COVID-19 MESH:C000657245
207 3365-3373 Species denotes SARS-CoV Tax:694009
208 3375-3420 Species denotes severe acute respiratory syndrome coronavirus Tax:694009
209 3344-3363 Disease denotes coronavirus disease MESH:D018352
213 3478-3486 Species denotes patients Tax:9606
214 3459-3468 Disease denotes pneumonia MESH:D011014
215 3503-3511 Disease denotes COVID-19 MESH:C000657245
224 3615-3623 Species denotes patients Tax:9606
225 3686-3694 Species denotes patients Tax:9606
226 3775-3783 Species denotes patients Tax:9606
227 3600-3614 Disease denotes critically ill MESH:D016638
228 3662-3676 Disease denotes critically ill MESH:D016638
229 3677-3685 Disease denotes COVID-19 MESH:C000657245
230 3721-3725 Disease denotes died MESH:D003643
231 3814-3818 Disease denotes died MESH:D003643
240 3924-3932 Species denotes patients Tax:9606
241 4014-4022 Species denotes patients Tax:9606
242 4126-4134 Species denotes patients Tax:9606
243 3914-3923 Disease denotes pneumonia MESH:D011014
244 3942-3956 Disease denotes critically ill MESH:D016638
245 4072-4076 Disease denotes died MESH:D003643
246 4101-4125 Disease denotes critically ill pneumonia MESH:D016638
247 4187-4191 Disease denotes died MESH:D003643