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PMC:7096775 / 4883-7331 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 1208-1213 Body_part denotes Liver http://purl.org/sig/ont/fma/fma7197

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 1208-1213 Body_part denotes Liver http://purl.obolibrary.org/obo/UBERON_0002107

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T40 64-73 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T41 124-132 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T42 189-197 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T43 804-816 Disease denotes Hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T44 906-914 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T45 981-985 Disease denotes COPD http://purl.obolibrary.org/obo/MONDO_0005002
T46 1055-1061 Disease denotes Cancer http://purl.obolibrary.org/obo/MONDO_0004992
T47 1123-1136 Disease denotes Renal disease http://purl.obolibrary.org/obo/MONDO_0002118|http://purl.obolibrary.org/obo/MONDO_0005240
T49 1208-1221 Disease denotes Liver disease http://purl.obolibrary.org/obo/MONDO_0005154
T50 1296-1300 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T51 2251-2255 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T52 2257-2292 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T53 2263-2292 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T54 2294-2298 Disease denotes COPD http://purl.obolibrary.org/obo/MONDO_0005002
T55 2300-2337 Disease denotes chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005002
T56 2320-2337 Disease denotes pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005275
T57 2339-2347 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T58 2429-2438 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T18 204-207 http://purl.obolibrary.org/obo/CLO_0001000 denotes 3–5
T19 224-227 http://purl.obolibrary.org/obo/CLO_0001000 denotes 3–5
T20 274-276 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T21 391-393 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T22 495-497 http://purl.obolibrary.org/obo/CLO_0054055 denotes 71
T23 632-634 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T24 639-645 http://purl.obolibrary.org/obo/UBERON_0003100 denotes Female
T25 658-660 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T26 665-667 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T27 670-672 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T28 699-701 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T29 943-945 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T30 1005-1007 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T31 1014-1016 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T32 1017-1019 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T33 1153-1155 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T34 1161-1163 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T35 1208-1213 http://purl.obolibrary.org/obo/UBERON_0002107 denotes Liver
T36 1208-1213 http://www.ebi.ac.uk/efo/EFO_0000887 denotes Liver
T37 1237-1240 http://purl.obolibrary.org/obo/CLO_0001302 denotes 3–4
T38 1246-1249 http://purl.obolibrary.org/obo/CLO_0001313 denotes 3–6
T39 1275-1280 http://purl.obolibrary.org/obo/CLO_0001006 denotes 3 11
T40 1412-1414 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T41 1439-1441 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T42 1480-1485 http://purl.obolibrary.org/obo/CLO_0001005 denotes 18–21
T43 1492-1494 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T44 1495-1497 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T45 1523-1525 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T46 1541-1545 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T47 1541-1545 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T48 1865-1870 http://purl.obolibrary.org/obo/CLO_0053001 denotes 11 4
T49 1872-1877 http://purl.obolibrary.org/obo/CLO_0001442 denotes 6 12
T50 2047-2049 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T51 2052-2054 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T52 2161-2163 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T2 425-427 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T3 521-523 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T4 525-527 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T5 533-535 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T6 538-540 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T7 543-545 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T8 548-550 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T9 605-607 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T10 614-616 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T11 691-693 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T12 779-781 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T13 788-790 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T14 801-803 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T15 854-856 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T16 863-865 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T17 872-874 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T18 960-962 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T19 969-971 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T20 1023-1025 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T21 1031-1033 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T22 1039-1041 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T23 1044-1046 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T24 1052-1054 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T25 1099-1101 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T26 1107-1109 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T27 1115-1117 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T28 1120-1122 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T29 1174-1176 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T30 1182-1184 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T31 1187-1189 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T32 1192-1194 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T33 1197-1199 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T34 1205-1207 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T35 1253-1255 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T36 1261-1263 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T37 1266-1268 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T38 1271-1273 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T39 1283-1285 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T40 1340-1342 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T41 1345-1347 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T42 1350-1352 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T43 1361-1363 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T44 1426-1428 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T45 1435-1437 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T46 1447-1449 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T47 1509-1511 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T48 1514-1516 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T49 1519-1521 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T50 1541-1545 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T51 1583-1585 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T52 1592-1594 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T53 1597-1599 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T54 1602-1604 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T55 1607-1609 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T56 1612-1614 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T57 1617-1619 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T58 1682-1684 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T59 1691-1693 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T60 1696-1698 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T61 1701-1703 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T62 1706-1708 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T63 1711-1713 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T64 1716-1718 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T65 1779-1781 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T66 1788-1790 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T67 1793-1795 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T68 1798-1800 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T69 1803-1805 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T70 1808-1810 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T71 1813-1815 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T72 1958-1960 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T73 1962-1964 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T74 1973-1975 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T75 1978-1980 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T76 1983-1985 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T77 1988-1990 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T78 1993-1995 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T79 2057-2059 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T80 2066-2068 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T81 2075-2077 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T82 2080-2082 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T83 2085-2087 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T84 2166-2168 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T85 2175-2177 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T86 2184-2186 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T87 2189-2191 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T88 2194-2196 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T89 2228-2230 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T90 2396-2398 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T35 0-144 Sentence denotes Table Epidemiological and clinical characteristics of sentinel pneumonia patients, crude and adjusted for age and sex, and COVID-19 case series
T36 145-197 Sentence denotes Characteristics SPP, crude SPP, adjusted COVID-19
T37 198-308 Sentence denotes Weeks 3–5, 2015–19 Weeks 3–5, 2015–19 20 days 28 days 31 days 26 days 22 days 30 days 17 days 23 days
T38 309-409 Sentence denotes Wuhan [5] Wuhan [6] Wuhan [7] Hubei [10] Beijing [8] Shenzhen [9] Zhejiang [11] Zhejiang [12]
T39 410-463 Sentence denotes Number 5,829 NA 99 138 82 137 262 298 62 91
T40 464-550 Sentence denotes Mean age in years (range) 73 (71–75) 63 (61–66) 55.5 NA NA 55 NA NA NA NA
T41 551-638 Sentence denotes Median age in years (range) 77 (76–78) 67 (65–69) NA 56 NA 57 47.5 47 41 50
T42 639-713 Sentence denotes Female, % (range) 45 (44–45) 41 (39–42) 32 46 NA 56 52 50 44 59
T43 714-803 Sentence denotes Any chronic disease, % (range) 82 (80–85) 74 (70–77) 51 46 NA 20 NA 32 32 NA
T44 804-885 Sentence denotes Hypertension, % (range) 58 (56–62) 49 (46–53) NA 31 NA 10 NA 13 8 16
T45 886-980 Sentence denotes Endocrine condition/diabetes, % (range) 28 (26–30) 24 (22–26) 13 14 NA 10 NA 6 2 9
T46 981-1054 Sentence denotes COPD, % (range) 20 (19–22) 20 (18–22) NA 3 NA 2 NA NA 2 NA
T47 1055-1122 Sentence denotes Cancer, % (range) 7 (6–8) 8 (7–9) 1 7 NA 2 NA 1 NA NA
T48 1123-1207 Sentence denotes Renal disease, % (range) 37 (34–40) 27 (24–29) NA 3 NA NA NA NA 2 NA
T49 1208-1285 Sentence denotes Liver disease, % (range) 4 (3–4) 5 (3–6) NA 3 NA NA NA 3 11 NA
T50 1286-1363 Sentence denotes Of total: ARDS, % (range) 1 (0–1) 1 (0–1) 17 20 NA NA NA 4 2 NA
T51 1364-1449 Sentence denotes Of total: ventilated, % (range) 8 (7–10) 9 (8–11) 20 23 NA 25 NA 11 2 NA
T52 1450-1532 Sentence denotes Of total: ICU, % (range) 19 (18–21) 20 (18–22) 23 26 NA NA NA 11 2 10
T53 1533-1619 Sentence denotes Of ICU: male, % (range) 58 (55–60) 61 (56–66) NA 61 NA NA NA NA NA NA
T54 1620-1718 Sentence denotes Of ICU: median age in years (range) 76 (74–78) 67 (64–68) NA 66 NA NA NA NA NA NA
T55 1719-1815 Sentence denotes Of ICU: without chronic, % (range) 10 (7–12) 16 (10–19) NA 28 NA NA NA NA NA NA
T56 1816-1889 Sentence denotes Of total: deceased, % (range) 9 (8–9) 6 (5–6) 11 4 6 12 1 0 0 0
T57 1890-1995 Sentence denotes Of deceased: median age, in years (range) 83 (82–84) 78 (76–79) NA NA 72.5 NA NA NA NA NA
T58 1996-2087 Sentence denotes Of deceased: < 60 years, % (range) 5 (2–9) 13 (7–22) 36 NA 20 NA 30 NA NA NA
T59 2088-2196 Sentence denotes Of deceased: without chronic disease, % (range) 13 (13–15) 13 (12–14) 18 NA 23 NA 30 NA NA NA
T60 2197-2250 Sentence denotes Still hospitalised, % 58 62 NA 56 82 77 98 66
T61 2251-2448 Sentence denotes ARDS: acute respiratory distress syndrome; COPD: chronic obstructive pulmonary disease; COVID-19: coronavirus disease; ICU: intensive care unit; NA: not available; SPP: sentinel pneumonia patients.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T12 64-73 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T13 804-816 Phenotype denotes Hypertension http://purl.obolibrary.org/obo/HP_0000822
T14 981-985 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510
T15 1055-1061 Phenotype denotes Cancer http://purl.obolibrary.org/obo/HP_0002664
T16 1208-1221 Phenotype denotes Liver disease http://purl.obolibrary.org/obo/HP_0001392
T17 2263-2283 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T18 2294-2298 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510
T19 2300-2337 Phenotype denotes chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/HP_0006510
T20 2429-2438 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

2_test

Id Subject Object Predicate Lexical cue
32186278-32112886-29336348 316-317 32112886 denotes 5
32186278-32007143-29336349 338-339 32007143 denotes 7
32186278-32075786-29336350 349-351 32075786 denotes 10
32186278-32404696-29336351 377-378 32404696 denotes 9

MyTest

Id Subject Object Predicate Lexical cue
32186278-32112886-29336348 316-317 32112886 denotes 5
32186278-32007143-29336349 338-339 32007143 denotes 7
32186278-32075786-29336350 349-351 32075786 denotes 10
32186278-32404696-29336351 377-378 32404696 denotes 9

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
104 189-197 Disease denotes COVID-19 MESH:C000657245
105 718-733 Disease denotes chronic disease MESH:D002908
106 804-816 Disease denotes Hypertension MESH:D006973
107 906-914 Disease denotes diabetes MESH:D003920
108 981-985 Disease denotes COPD MESH:D029424
109 1055-1061 Disease denotes Cancer MESH:D009369
110 1123-1136 Disease denotes Renal disease MESH:D007674
111 1208-1221 Disease denotes Liver disease MESH:D008107
112 1296-1300 Disease denotes ARDS MESH:D012128
113 2109-2124 Disease denotes chronic disease MESH:D002908
117 74-82 Species denotes patients Tax:9606
118 64-73 Disease denotes pneumonia MESH:D011014
119 124-132 Disease denotes COVID-19 MESH:C000657245
127 2439-2447 Species denotes patients Tax:9606
128 2251-2255 Disease denotes ARDS MESH:D012128
129 2257-2292 Disease denotes acute respiratory distress syndrome MESH:D012128
130 2294-2298 Disease denotes COPD MESH:D029424
131 2300-2337 Disease denotes chronic obstructive pulmonary disease MESH:D029424
132 2349-2368 Disease denotes coronavirus disease MESH:D018352
133 2429-2438 Disease denotes pneumonia MESH:D011014