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PMC:7096774 / 18386-20503 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
331 79-82 Gene denotes THL Gene:7062
334 381-383 Disease denotes AH MESH:D007039
335 458-466 Disease denotes COVID-19 MESH:C000657245
338 820-823 Gene denotes THL Gene:7062
339 764-774 Species denotes SARS-CoV-2 Tax:2697049
343 907-910 Gene denotes THL Gene:7062
344 859-862 Gene denotes THL Gene:7062
345 863-871 Disease denotes COVID-19 MESH:C000657245
347 977-980 Gene denotes THL Gene:7062
350 1075-1078 Gene denotes THL Gene:7062
351 1126-1134 Disease denotes COVID-19 MESH:C000657245
359 1490-1493 Gene denotes THL Gene:7062
360 1335-1343 Disease denotes COVID-19 MESH:C000657245
361 1358-1364 Disease denotes HUSLAB
362 1420-1426 Disease denotes HUSLAB
363 1480-1486 Disease denotes HUSLAB
364 1285-1287 CellLine denotes LM CVCL:5998
365 1374-1376 CellLine denotes LM CVCL:5998
367 1534-1541 Species denotes patient Tax:9606
369 1555-1557 Disease denotes MJ MESH:D009207
371 1692-1698 Disease denotes HUSLAB
378 1821-1824 Gene denotes CSK Gene:1445
379 1994-1997 Gene denotes CSK Gene:1445
380 1957-1960 Gene denotes THL Gene:7062
381 1845-1848 Gene denotes THL Gene:7062
382 1876-1884 Disease denotes COVID-19 MESH:C000657245
383 1913-1921 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T116 608-614 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T117 1204-1209 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T118 1264-1269 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T119 1798-1803 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T37 1204-1209 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T38 1264-1269 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T39 1798-1803 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T89 22-24 Disease denotes LS http://purl.obolibrary.org/obo/MONDO_0009723
T90 458-466 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T91 585-587 Disease denotes TS http://purl.obolibrary.org/obo/MONDO_0010979|http://purl.obolibrary.org/obo/MONDO_0016455
T93 764-772 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T94 863-871 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T95 1126-1134 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T96 1154-1156 Disease denotes TS http://purl.obolibrary.org/obo/MONDO_0010979|http://purl.obolibrary.org/obo/MONDO_0016455
T98 1285-1287 Disease denotes LM http://purl.obolibrary.org/obo/MONDO_0016569
T99 1335-1343 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T100 1374-1376 Disease denotes LM http://purl.obolibrary.org/obo/MONDO_0016569
T101 1562-1564 Disease denotes LS http://purl.obolibrary.org/obo/MONDO_0009723
T102 1876-1884 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T103 1913-1921 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T116 28-29 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T117 83-86 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T118 408-413 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T119 731-736 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T120 829-831 http://purl.obolibrary.org/obo/CLO_0007874 denotes MS
T121 1218-1219 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T122 1240-1250 http://purl.obolibrary.org/obo/OBI_0000245 denotes organising
T123 1285-1287 http://purl.obolibrary.org/obo/CLO_0007336 denotes LM
T124 1374-1376 http://purl.obolibrary.org/obo/CLO_0007336 denotes LM
T125 1495-1497 http://purl.obolibrary.org/obo/PR_000010213 denotes MB
T126 1555-1557 http://purl.obolibrary.org/obo/CLO_0007731 denotes MJ
T127 1774-1784 http://purl.obolibrary.org/obo/OBI_0000245 denotes organising

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T81 22-24 Chemical denotes LS http://purl.obolibrary.org/obo/CHEBI_73523
T82 381-383 Chemical denotes AH http://purl.obolibrary.org/obo/CHEBI_73771
T83 405-407 Chemical denotes MN http://purl.obolibrary.org/obo/CHEBI_141442
T84 585-587 Chemical denotes TS http://purl.obolibrary.org/obo/CHEBI_73664
T85 656-658 Chemical denotes SK http://purl.obolibrary.org/obo/CHEBI_144702
T86 825-827 Chemical denotes MP http://purl.obolibrary.org/obo/CHEBI_73612
T87 829-831 Chemical denotes MS http://purl.obolibrary.org/obo/CHEBI_73613
T88 833-835 Chemical denotes TP http://purl.obolibrary.org/obo/CHEBI_73662
T89 893-898 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T90 919-921 Chemical denotes MM http://purl.obolibrary.org/obo/CHEBI_53458|http://purl.obolibrary.org/obo/CHEBI_74707
T92 968-973 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T93 1022-1024 Chemical denotes MN http://purl.obolibrary.org/obo/CHEBI_141442
T94 1147-1149 Chemical denotes AK http://purl.obolibrary.org/obo/CHEBI_132403
T95 1154-1156 Chemical denotes TS http://purl.obolibrary.org/obo/CHEBI_73664
T96 1211-1213 Chemical denotes AK http://purl.obolibrary.org/obo/CHEBI_132403
T97 1285-1287 Chemical denotes LM http://purl.obolibrary.org/obo/CHEBI_73584
T98 1292-1294 Chemical denotes ML http://purl.obolibrary.org/obo/CHEBI_74705
T99 1374-1376 Chemical denotes LM http://purl.obolibrary.org/obo/CHEBI_73584
T100 1562-1564 Chemical denotes LS http://purl.obolibrary.org/obo/CHEBI_73523
T101 1814-1816 Chemical denotes NI http://purl.obolibrary.org/obo/CHEBI_141421
T102 1943-1948 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T147 0-143 Sentence denotes Conflict of interest: LS is a co-investigator in an unrelated study, for which THL has received research funding from GlaxoSmithKline Vaccines.
T148 144-204 Sentence denotes The other authors report no potential conflicts of interest.
T149 205-228 Sentence denotes Authors’ contributions:
T150 229-292 Sentence denotes All authors attest they meet the ICMJE criteria for authorship.
T151 293-380 Sentence denotes All authors have contributed to, seen and approved the final version of the manuscript.
T152 381-584 Sentence denotes AH set up and performed MN tests, participated in laboratory confirmation of COVID-19 suspicions, coordinated and participated in the collections of the Finnish population sera, and wrote the manuscript.
T153 585-655 Sentence denotes TS performed the whole genome sequencing and genetic characterisation.
T154 656-714 Sentence denotes SK and JH performed the IFA and WB analysis, respectively.
T155 715-824 Sentence denotes PÖ isolated the virus and was responsible of the SARS-CoV-2 related biosafety level 3 laboratory work at THL.
T156 825-911 Sentence denotes MP, MS, TP and JS participated in THL COVID-19 situation monitoring group work of THL.
T157 912-981 Sentence denotes SB and MM participated in serological analysis planning group of THL.
T158 982-1033 Sentence denotes SB contributed in the interpretation of MN results.
T159 1034-1146 Sentence denotes ER set up the real-time RT-PCR method at THL and participated in laboratory confirmation of COVID-19 suspicions.
T160 1147-1210 Sentence denotes AK and TS participated in collection of the convalescent serum.
T161 1211-1279 Sentence denotes AK had a significant role to organising convalescent serum sampling.
T162 1280-1365 Sentence denotes HKK, LM and ML were in charge of primary diagnostic of COVID-19 suspicions in HUSLAB.
T163 1366-1494 Sentence denotes HKK and LM also set up the real-time RT-PCR method at HUSLAB and participated in laboratory sample logistics from HUSLAB to THL.
T164 1495-1554 Sentence denotes MB was responsible for the care of the patient in hospital.
T165 1555-1629 Sentence denotes MJ and LS participated in interviewing the index case and contact tracing.
T166 1630-1813 Sentence denotes OV was responsible for virological and serological studies in HUSLAB and University of Helsinki, participated in the designing of the study and organising convalescent serum sampling.
T167 1814-1993 Sentence denotes NI and CSK were responsible of THL laboratory confirmation of COVID-19 suspicions, participated in COVID-19 situation monitoring group work of THL and laboratory sample logistics.
T168 1994-2117 Sentence denotes CSK was also responsible for the collections of the Finnish population sera and participated in the designing of the study.