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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id tao:has_standard_notation
1 42-62 Disease denotes SARS-CoV-2 infection MESH:C000657245
6 634-639 Gene denotes spike Gene:43740568
7 357-367 Species denotes SARS-CoV-2 Tax:2697049
8 150-169 Disease denotes coronavirus disease MESH:D018352
9 171-179 Disease denotes COVID-19 MESH:C000657245
16 772-819 Species denotes Severe acute respiratory syndrome coronavirus 2 Tax:2697049
17 821-831 Species denotes SARS-CoV-2 Tax:2697049
18 900-910 Species denotes SARS-CoV-2 Tax:2697049
19 685-694 Disease denotes pneumonia MESH:D011014
20 929-948 Disease denotes coronavirus disease MESH:D018352
21 950-958 Disease denotes COVID-19 MESH:C000657245
25 1167-1177 Species denotes SARS-CoV-2 Tax:2697049
26 1296-1306 Species denotes SARS-CoV-2 Tax:2697049
27 1061-1069 Disease denotes COVID-19 MESH:C000657245
41 2440-2444 Gene denotes RdRp Gene:43740578
42 2468-2469 Gene denotes N Gene:43740575
43 2402-2403 Gene denotes E Gene:43740570
44 2302-2305 Gene denotes THL Gene:7062
45 1574-1582 Disease denotes COVID-19 MESH:C000657245
46 1766-1772 Disease denotes nausea MESH:D009325
47 1804-1809 Disease denotes fever MESH:D005334
48 1819-1827 Disease denotes weakness MESH:D018908
49 1832-1837 Disease denotes cough MESH:D003371
50 1895-1903 Disease denotes COVID-19 MESH:C000657245
51 2064-2084 Disease denotes SARS-CoV-2 infection MESH:C000657245
52 2097-2117 Disease denotes SARS-CoV-2 infection MESH:C000657245
53 2222-2228 Disease denotes HUSLAB
55 2644-2652 Disease denotes COVID-19 MESH:C000657245
57 2711-2730 Disease denotes coronavirus disease MESH:D018352
67 2898-2902 Gene denotes RdRp Gene:43740578
68 2895-2896 Gene denotes E Gene:43740570
69 2904-2905 Gene denotes N Gene:43740575
70 2938-2949 Disease denotes NPS HUSTHL MESH:D009261
71 3071-3082 Disease denotes NPS HUSTHL MESH:D009261
72 3206-3241 Disease denotes NPS HUSTHL NegNeg NegNeg NegNeg MESH:D009261
73 3309-3344 Disease denotes NPS HUSTHL NegNeg NegNeg NegNeg MESH:D009261
74 3364-3378 Disease denotes ND ND ND ND MESH:C537849
75 3473-3508 Disease denotes NPS HUSTHL NegNeg NegNeg NegNeg MESH:D009261
77 2776-2796 Disease denotes SARS-CoV-2 infection MESH:C000657245
84 3524-3540 Gene denotes envelope protein Gene:64006
85 3804-3808 Gene denotes RdRp Gene:43740578
86 3521-3522 Gene denotes E Gene:43740570
87 3669-3670 Gene denotes N Gene:43740575
88 3880-3883 Gene denotes THL Gene:7062
89 3547-3550 Disease denotes HUS MESH:D006463
91 4814-4824 Species denotes SARS-CoV-2 Tax:2697049
105 4860-4870 Species denotes SARS-CoV-2 Tax:2697049
106 4877-4887 Species denotes SARS-CoV-2 Tax:2697049
107 5136-5139 Chemical denotes CO2 MESH:D002245
108 5166-5198 Chemical denotes Eagle's minimum essential medium
109 5200-5204 Chemical denotes EMEM
110 5263-5273 Chemical denotes penicillin MESH:D010406
111 5284-5296 Chemical denotes streptomycin MESH:D013307
112 5303-5314 Chemical denotes L-glutamine MESH:D005973
113 5322-5327 Chemical denotes HEPES MESH:D006531
114 5247-5250 Disease denotes FBS MESH:D005198
115 4966-4968 CellLine denotes E6 CVCL:4582
116 5443-5445 CellLine denotes E6 CVCL:4582
117 5681-5683 CellLine denotes E6 CVCL:4582
119 5991-6001 Species denotes SARS-CoV-2 Tax:2697049
126 6078-6088 Species denotes SARS-CoV-2 Tax:2697049
127 6457-6466 Chemical denotes histidine MESH:D006639
128 6470-6478 Chemical denotes tyrosine MESH:D014443
129 6286-6288 CellLine denotes E6 CVCL:4582
130 6328-6335 Mutation denotes C21707T g.21707C>T
131 6480-6484 Mutation denotes H49Y p.H49Y
133 6586-6601 Disease denotes CoV-2 infection MESH:C000657245
143 6769-6779 Species denotes SARS-CoV-2 Tax:2697049
144 6882-6889 Species denotes patient Tax:9606
145 6900-6910 Species denotes SARS-CoV-2 Tax:2697049
146 7194-7199 Species denotes human Tax:9606
147 6986-6993 Chemical denotes acetone MESH:D000096
148 7144-7170 Chemical denotes fluorescein isothiocyanate
149 7172-7176 Chemical denotes FITC
150 6851-6859 Disease denotes infected MESH:D007239
151 6842-6844 CellLine denotes E6 CVCL:4582
153 7600-7608 Disease denotes COVID-19 MESH:C000657245
155 7662-7686 Disease denotes coronavirus disease 2019 MESH:C000657245
157 7693-7703 Species denotes SARS-CoV-2 Tax:2697049
166 8352-8353 Gene denotes N Gene:43740575
167 8355-8356 Gene denotes S Gene:43740568
168 8095-8104 Species denotes SARS-CoV2 Tax:2697049
169 8342-8351 Species denotes SARS-CoV2 Tax:2697049
170 8176-8197 Chemical denotes Laemmli sample buffer
171 8105-8113 Disease denotes infected MESH:D007239
172 8152-8161 Disease denotes infection MESH:D007239
173 8119-8121 CellLine denotes E6 CVCL:4582
177 8554-8561 Species denotes patient Tax:9606
178 8514-8533 Disease denotes SARS-CoV-2 infected MESH:C000657245
179 8539-8541 CellLine denotes E6 CVCL:4582
188 9225-9228 Gene denotes Rad Gene:6236
189 8690-8691 Gene denotes S Gene:43740568
190 8938-8948 Species denotes SARS-CoV-2 Tax:2697049
191 9003-9013 Species denotes SARS-CoV-2 Tax:2697049
192 9064-9072 Species denotes SARS-CoV Tax:694009
193 8803-8810 Species denotes patient Tax:9606
194 9317-9322 Species denotes human Tax:9606
195 9051-9053 CellLine denotes E6 CVCL:4582
203 9361-9371 Species denotes SARS-CoV-2 Tax:2697049
204 9693-9703 Species denotes SARS-CoV-2 Tax:2697049
205 9586-9590 Chemical denotes EMEM
206 9932-9935 Chemical denotes CO2 MESH:D002245
207 9632-9635 Disease denotes FBS MESH:D005198
208 10073-10088 Disease denotes CoV-2 infection MESH:C000657245
209 9797-9799 CellLine denotes E6 CVCL:4582
212 10327-10334 Species denotes patient Tax:9606
213 10270-10279 Disease denotes infection MESH:D007239
218 10760-10763 Gene denotes IgG
219 10772-10794 Species denotes human coronavirus OC43 Tax:31631
220 10850-10858 Species denotes SARS-CoV Tax:694009
221 10799-10803 Species denotes 229E Tax:11137
223 11048-11063 Gene denotes Directive 95/46
227 11325-11332 Species denotes patient Tax:9606
228 11355-11365 Chemical denotes TYH2018322
229 11367-11377 Chemical denotes TYH2019263
238 12191-12194 Gene denotes THL Gene:7062
239 11762-11770 Disease denotes COVID-19 MESH:C000657245
240 12001-12010 Disease denotes pneumonia MESH:D011014
241 12024-12030 Disease denotes nausea MESH:D009325
242 12032-12042 Disease denotes high fever MESH:D005334
243 12044-12049 Disease denotes cough MESH:D003371
244 12051-12068 Disease denotes muscular weakness MESH:D018908
245 12073-12080 Disease denotes fatigue MESH:D005221
249 12262-12270 Disease denotes COVID-19 MESH:C000657245
250 12501-12509 Disease denotes COVID-19 MESH:C000657245
251 12510-12519 Disease denotes infection MESH:D007239
254 12731-12738 Species denotes patient Tax:9606
255 12966-12970 Species denotes ncov Tax:2697049
260 13123-13131 Species denotes patients Tax:9606
261 13256-13266 Species denotes SARS-CoV-2 Tax:2697049
262 13043-13051 Disease denotes COVID-19 MESH:C000657245
263 13459-13479 Disease denotes SARS-CoV-2 infection MESH:C000657245
266 14019-14027 Species denotes patients Tax:9606
267 14095-14103 Species denotes SARS-CoV Tax:694009
272 14587-14588 Gene denotes S Gene:43740568
273 14300-14301 Gene denotes N Gene:43740575
274 14306-14307 Gene denotes S Gene:43740568
275 14409-14416 Species denotes patient Tax:9606
289 14857-14866 Species denotes hCoV OC43 Tax:31631
290 14910-14918 Species denotes SARS-CoV Tax:694009
291 14943-14953 Species denotes SARS-CoV-2 Tax:2697049
292 15489-15499 Species denotes SARS-CoV-2 Tax:2697049
293 15641-15649 Species denotes patients Tax:9606
294 15934-15942 Species denotes patients Tax:9606
295 16059-16067 Species denotes patients Tax:9606
296 14871-14875 Species denotes 229E Tax:11137
297 15344-15354 Species denotes SARS-CoV-2 Tax:2697049
298 15761-15769 Species denotes patients Tax:9606
299 14812-14841 Disease denotes coronavirus (hCoV) infections MESH:D018352
300 15655-15673 Disease denotes SARS-CoV infection MESH:C000657245
301 16104-16124 Disease denotes SARS-CoV-2 infection MESH:C000657245
313 16440-16484 Species denotes Middle East respiratory syndrome coronavirus Tax:1335626
314 16576-16584 Species denotes SARS-CoV Tax:694009
315 16601-16606 Species denotes human Tax:9606
316 16774-16782 Species denotes patients Tax:9606
317 16952-16961 Species denotes HCoV-229E Tax:11137
318 16966-16975 Species denotes HCoV-OC43 Tax:31631
319 17019-17027 Species denotes children Tax:9606
320 17108-17117 Species denotes HCoV-NL63 Tax:277944
321 17122-17131 Species denotes HCoV-229E Tax:11137
322 16263-16273 Species denotes SARS-CoV-2 Tax:2697049
323 16814-16818 Species denotes HCoV Tax:694448
327 17208-17216 Species denotes patients Tax:9606
328 17371-17391 Disease denotes SARS CoV-2 infection MESH:C000657245
329 17603-17624 Disease denotes SARS-CoV-2 infections MESH:C000657245
331 18465-18468 Gene denotes THL Gene:7062
334 18767-18769 Disease denotes AH MESH:D007039
335 18844-18852 Disease denotes COVID-19 MESH:C000657245
338 19206-19209 Gene denotes THL Gene:7062
339 19150-19160 Species denotes SARS-CoV-2 Tax:2697049
343 19293-19296 Gene denotes THL Gene:7062
344 19245-19248 Gene denotes THL Gene:7062
345 19249-19257 Disease denotes COVID-19 MESH:C000657245
347 19363-19366 Gene denotes THL Gene:7062
350 19461-19464 Gene denotes THL Gene:7062
351 19512-19520 Disease denotes COVID-19 MESH:C000657245
359 19876-19879 Gene denotes THL Gene:7062
360 19721-19729 Disease denotes COVID-19 MESH:C000657245
361 19744-19750 Disease denotes HUSLAB
362 19806-19812 Disease denotes HUSLAB
363 19866-19872 Disease denotes HUSLAB
364 19671-19673 CellLine denotes LM CVCL:5998
365 19760-19762 CellLine denotes LM CVCL:5998
367 19920-19927 Species denotes patient Tax:9606
369 19941-19943 Disease denotes MJ MESH:D009207
371 20078-20084 Disease denotes HUSLAB
378 20207-20210 Gene denotes CSK Gene:1445
379 20380-20383 Gene denotes CSK Gene:1445
380 20343-20346 Gene denotes THL Gene:7062
381 20231-20234 Gene denotes THL Gene:7062
382 20262-20270 Disease denotes COVID-19 MESH:C000657245
383 20299-20307 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 414-420 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T2 438-448 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T3 511-519 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T4 572-575 Body_part denotes IgM http://purl.org/sig/ont/fma/fma62873
T5 580-583 Body_part denotes IgG http://purl.org/sig/ont/fma/fma62872
T6 640-648 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T7 1329-1337 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T8 1357-1362 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T9 1440-1445 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T10 1743-1747 Body_part denotes nose http://purl.org/sig/ont/fma/fma46472
T11 2410-2413 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T12 2424-2427 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T13 2911-2914 Body_part denotes IgM http://purl.org/sig/ont/fma/fma62873
T14 2916-2919 Body_part denotes IgG http://purl.org/sig/ont/fma/fma62872
T15 3133-3138 Body_part denotes Serum http://purl.org/sig/ont/fma/fma63083
T16 3254-3259 Body_part denotes Serum http://purl.org/sig/ont/fma/fma63083
T17 3357-3362 Body_part denotes Serum http://purl.org/sig/ont/fma/fma63083
T18 3412-3417 Body_part denotes Serum http://purl.org/sig/ont/fma/fma63083
T19 3533-3540 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T20 3541-3545 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T21 3593-3596 Body_part denotes IgG http://purl.org/sig/ont/fma/fma62872
T22 3598-3614 Body_part denotes immunoglobulin G http://purl.org/sig/ont/fma/fma62872
T23 3616-3619 Body_part denotes IgM http://purl.org/sig/ont/fma/fma62873
T24 3621-3637 Body_part denotes immunoglobulin M http://purl.org/sig/ont/fma/fma62873
T25 3685-3692 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T26 3693-3697 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T27 3810-3813 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T28 3824-3827 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T29 3839-3843 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T30 4969-4974 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T31 5106-5111 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T32 5240-5245 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T33 5305-5314 Body_part denotes glutamine http://purl.org/sig/ont/fma/fma82752
T34 5446-5451 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T35 5684-5689 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T36 6023-6029 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T37 6289-6294 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T38 6457-6466 Body_part denotes histidine http://purl.org/sig/ont/fma/fma82755
T39 6470-6478 Body_part denotes tyrosine http://purl.org/sig/ont/fma/fma82768
T40 6537-6549 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T41 6552-6560 Body_part denotes Antibody http://purl.org/sig/ont/fma/fma62871
T42 6602-6607 Body_part denotes Serum http://purl.org/sig/ont/fma/fma63083
T43 6732-6737 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T44 6738-6741 Body_part denotes IgM http://purl.org/sig/ont/fma/fma62873
T45 6746-6749 Body_part denotes IgG http://purl.org/sig/ont/fma/fma62872
T46 6845-6850 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T47 7006-7011 Body_part denotes Serum http://purl.org/sig/ont/fma/fma63083
T48 7088-7091 Body_part denotes IgM http://purl.org/sig/ont/fma/fma62873
T49 7107-7110 Body_part denotes IgG http://purl.org/sig/ont/fma/fma62872
T50 7112-7122 Body_part denotes Antibodies http://purl.org/sig/ont/fma/fma62871
T51 7200-7203 Body_part denotes IgM http://purl.org/sig/ont/fma/fma62873
T52 7207-7210 Body_part denotes IgG http://purl.org/sig/ont/fma/fma62872
T53 7296-7299 Body_part denotes IgG http://purl.org/sig/ont/fma/fma62872
T54 7332-7335 Body_part denotes IgM http://purl.org/sig/ont/fma/fma62873
T55 7404-7409 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T56 7585-7590 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T57 7704-7707 Body_part denotes IgM http://purl.org/sig/ont/fma/fma62873
T58 7712-7715 Body_part denotes IgG http://purl.org/sig/ont/fma/fma62872
T59 7834-7837 Body_part denotes IgM http://purl.org/sig/ont/fma/fma62873
T60 7842-7845 Body_part denotes IgG http://purl.org/sig/ont/fma/fma62872
T61 8013-8016 Body_part denotes IgM http://purl.org/sig/ont/fma/fma62873
T62 8021-8024 Body_part denotes IgG http://purl.org/sig/ont/fma/fma62872
T63 8078-8083 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T64 8122-8127 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T65 8315-8320 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T66 8363-8370 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T67 8451-8456 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T68 8542-8547 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T69 8562-8567 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T70 8664-8671 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T71 8811-8816 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T72 8949-8957 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T73 9014-9022 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T74 9073-9081 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T75 9394-9402 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T76 9481-9486 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T77 9744-9749 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T78 9800-9805 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T79 9845-9850 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T80 10043-10048 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T81 10119-10124 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T82 10137-10142 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T83 10454-10459 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T84 10521-10526 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T85 10536-10541 Body_part denotes Serum http://purl.org/sig/ont/fma/fma63083
T86 10629-10634 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T87 10760-10763 Body_part denotes IgG http://purl.org/sig/ont/fma/fma62872
T88 10833-10841 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T89 10861-10868 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T90 11252-11257 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T91 11448-11453 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T92 11636-11641 Body_part denotes Serum http://purl.org/sig/ont/fma/fma63083
T93 12018-12022 Body_part denotes nose http://purl.org/sig/ont/fma/fma46472
T94 12717-12723 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T95 13104-13109 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T96 13318-13323 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T97 13362-13367 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T98 13433-13441 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T99 13731-13734 Body_part denotes IgM http://purl.org/sig/ont/fma/fma62873
T100 13739-13742 Body_part denotes IgG http://purl.org/sig/ont/fma/fma62872
T101 14163-14166 Body_part denotes IgM http://purl.org/sig/ont/fma/fma62873
T102 14171-14174 Body_part denotes IgG http://purl.org/sig/ont/fma/fma62872
T103 14220-14225 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T104 14308-14315 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T105 14380-14388 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T106 14417-14422 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T107 14456-14463 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T108 14492-14500 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T109 14557-14565 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T110 14589-14596 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T111 15238-15246 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T112 15774-15777 Body_part denotes IgG http://purl.org/sig/ont/fma/fma62872
T113 15810-15813 Body_part denotes IgM http://purl.org/sig/ont/fma/fma62873
T114 15818-15821 Body_part denotes IgG http://purl.org/sig/ont/fma/fma62872
T115 16900-16905 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T116 18994-19000 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T117 19590-19595 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T118 19650-19655 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T119 20184-20189 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 1357-1362 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T2 1440-1445 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T3 1743-1747 Body_part denotes nose http://purl.obolibrary.org/obo/UBERON_0000004
T4 3133-3138 Body_part denotes Serum http://purl.obolibrary.org/obo/UBERON_0001977
T5 3254-3259 Body_part denotes Serum http://purl.obolibrary.org/obo/UBERON_0001977
T6 3357-3362 Body_part denotes Serum http://purl.obolibrary.org/obo/UBERON_0001977
T7 3412-3417 Body_part denotes Serum http://purl.obolibrary.org/obo/UBERON_0001977
T8 5240-5245 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T9 6602-6607 Body_part denotes Serum http://purl.obolibrary.org/obo/UBERON_0001977
T10 6732-6737 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T11 7006-7011 Body_part denotes Serum http://purl.obolibrary.org/obo/UBERON_0001977
T12 7404-7409 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T13 7585-7590 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T14 8078-8083 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T15 8315-8320 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T16 8451-8456 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T17 8562-8567 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T18 8811-8816 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T19 9481-9486 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T20 9744-9749 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T21 9845-9850 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T22 10043-10048 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T23 10137-10142 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T24 10454-10459 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T25 10536-10541 Body_part denotes Serum http://purl.obolibrary.org/obo/UBERON_0001977
T26 10629-10634 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T27 11252-11257 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T28 11448-11453 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T29 11636-11641 Body_part denotes Serum http://purl.obolibrary.org/obo/UBERON_0001977
T30 12018-12022 Body_part denotes nose http://purl.obolibrary.org/obo/UBERON_0000004
T31 13104-13109 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T32 13318-13323 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T33 13362-13367 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T34 14220-14225 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T35 14417-14422 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T36 16900-16905 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T37 19590-19595 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T38 19650-19655 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T39 20184-20189 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 42-50 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T2 53-62 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T3 171-179 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T4 357-365 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T5 685-694 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T6 772-819 Disease denotes Severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T7 821-829 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T8 900-908 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T9 950-958 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T10 1061-1069 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T11 1167-1175 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T12 1296-1304 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T13 1574-1582 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T14 1737-1747 Disease denotes runny nose http://purl.obolibrary.org/obo/MONDO_0003014
T15 1895-1903 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T16 2064-2072 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T17 2075-2084 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T18 2097-2105 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T19 2108-2117 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T20 2644-2652 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T21 2701-2709 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T22 2776-2784 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T23 2787-2796 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T24 2938-2941 Disease denotes NPS http://purl.obolibrary.org/obo/MONDO_0008061
T25 3071-3074 Disease denotes NPS http://purl.obolibrary.org/obo/MONDO_0008061
T26 3206-3209 Disease denotes NPS http://purl.obolibrary.org/obo/MONDO_0008061
T27 3309-3312 Disease denotes NPS http://purl.obolibrary.org/obo/MONDO_0008061
T28 3473-3476 Disease denotes NPS http://purl.obolibrary.org/obo/MONDO_0008061
T29 3547-3550 Disease denotes HUS http://purl.obolibrary.org/obo/MONDO_0001549
T30 3778-3781 Disease denotes NPS http://purl.obolibrary.org/obo/MONDO_0008061
T31 4814-4822 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T32 4860-4868 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T33 4877-4885 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T34 5011-5014 Disease denotes NPS http://purl.obolibrary.org/obo/MONDO_0008061
T35 5936-5939 Disease denotes NPS http://purl.obolibrary.org/obo/MONDO_0008061
T36 5991-5999 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T37 6078-6086 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T38 6149-6152 Disease denotes NPS http://purl.obolibrary.org/obo/MONDO_0008061
T39 6581-6589 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T40 6592-6601 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T41 6769-6777 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T42 6900-6908 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T43 7600-7608 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T44 7652-7660 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T45 7662-7686 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T46 7693-7701 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T47 8095-8099 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T48 8152-8161 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T49 8342-8346 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T50 8514-8522 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T51 8938-8946 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T52 9003-9011 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T53 9064-9072 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T54 9361-9369 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T55 9693-9701 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T56 10068-10076 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T57 10079-10088 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T58 10270-10279 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T59 10850-10858 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T60 11762-11770 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T61 12001-12010 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T62 12012-12022 Disease denotes runny nose http://purl.obolibrary.org/obo/MONDO_0003014
T63 12262-12270 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T64 12501-12509 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T65 12510-12519 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T66 13043-13051 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T67 13256-13264 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T68 13459-13467 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T69 13470-13479 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T70 14095-14103 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T71 14831-14841 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T72 14910-14918 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T73 14943-14951 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T74 15344-15352 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T75 15489-15497 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T76 15655-15673 Disease denotes SARS-CoV infection http://purl.obolibrary.org/obo/MONDO_0005091
T77 15664-15673 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T78 16104-16112 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T79 16115-16124 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T80 16263-16271 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T81 16576-16584 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T82 16769-16773 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T83 17203-17207 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T84 17301-17305 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T85 17371-17375 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T86 17382-17391 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T87 17603-17611 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T88 17614-17624 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T89 18408-18410 Disease denotes LS http://purl.obolibrary.org/obo/MONDO_0009723
T90 18844-18852 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T91 18971-18973 Disease denotes TS http://purl.obolibrary.org/obo/MONDO_0010979|http://purl.obolibrary.org/obo/MONDO_0016455
T93 19150-19158 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T94 19249-19257 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T95 19512-19520 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T96 19540-19542 Disease denotes TS http://purl.obolibrary.org/obo/MONDO_0010979|http://purl.obolibrary.org/obo/MONDO_0016455
T98 19671-19673 Disease denotes LM http://purl.obolibrary.org/obo/MONDO_0016569
T99 19721-19729 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T100 19760-19762 Disease denotes LM http://purl.obolibrary.org/obo/MONDO_0016569
T101 19948-19950 Disease denotes LS http://purl.obolibrary.org/obo/MONDO_0009723
T102 20262-20270 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T103 20299-20307 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 383-388 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T2 429-430 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T3 672-673 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 911-916 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T5 1603-1604 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T6 1605-1611 http://purl.obolibrary.org/obo/UBERON_0003100 denotes female
T7 1662-1664 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T8 1735-1736 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 1743-1747 http://www.ebi.ac.uk/efo/EFO_0000828 denotes nose
T10 1776-1778 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T11 2361-2368 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T12 3541-3545 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T13 3663-3667 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T14 3693-3697 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T15 3839-3843 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T16 4023-4029 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T17 4762-4764 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T18 4840-4845 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T19 4871-4876 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T20 4919-4920 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21 4961-4974 http://purl.obolibrary.org/obo/CLO_0051719 denotes Vero E6 cells
T22 5106-5111 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T23 5438-5451 http://purl.obolibrary.org/obo/CLO_0051719 denotes Vero E6 cells
T24 5534-5535 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T25 5617-5622 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T26 5645-5646 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T27 5651-5656 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T28 5676-5689 http://purl.obolibrary.org/obo/CLO_0051719 denotes Vero E6 cells
T29 5695-5700 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T30 5739-5744 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Virus
T31 5800-5805 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T32 5979-5981 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T33 5986-5988 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T34 6234-6239 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T35 6281-6294 http://purl.obolibrary.org/obo/CLO_0051719 denotes Vero E6 cells
T36 6300-6305 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T37 6306-6311 http://purl.obolibrary.org/obo/CLO_0050964 denotes had 1
T38 6455-6456 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T39 6837-6850 http://purl.obolibrary.org/obo/CLO_0051719 denotes Vero E6 cells
T40 6926-6931 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T41 7194-7199 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T42 7860-7861 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T43 8114-8127 http://purl.obolibrary.org/obo/CLO_0051719 denotes Vero E6 cells
T44 8279-8283 http://purl.obolibrary.org/obo/CLO_0001757 denotes At 1
T45 8440-8444 http://purl.obolibrary.org/obo/CLO_0001757 denotes at 1
T46 8534-8547 http://purl.obolibrary.org/obo/CLO_0051719 denotes Vero E6 cells
T47 8715-8723 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T48 8857-8866 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membranes
T49 8963-8972 http://purl.obolibrary.org/obo/CLO_0007225 denotes labelling
T50 9046-9050 http://purl.obolibrary.org/obo/CLO_0009524 denotes Vero
T51 9046-9050 http://purl.obolibrary.org/obo/CLO_0050515 denotes Vero
T52 9148-9150 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T53 9155-9157 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T54 9155-9157 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T55 9293-9295 http://purl.obolibrary.org/obo/CLO_0007314 denotes LI
T56 9307-9311 http://purl.obolibrary.org/obo/NCBITaxon_9925 denotes goat
T57 9317-9322 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T58 9339-9343 http://purl.obolibrary.org/obo/CLO_0001757 denotes at 1
T59 9449-9453 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T60 9457-9458 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T61 9792-9805 http://purl.obolibrary.org/obo/CLO_0051719 denotes Vero E6 cells
T62 9839-9844 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T63 10119-10124 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T64 10238-10242 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T65 10521-10526 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T66 10586-10592 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T67 10608-10612 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T68 10622-10628 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T69 10713-10719 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T70 10772-10777 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T71 10822-10832 http://purl.obolibrary.org/obo/NCBITaxon_10141 denotes guinea pig
T72 10898-10903 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T73 11064-11066 http://purl.obolibrary.org/obo/CLO_0002878 denotes EC
T74 12018-12022 http://www.ebi.ac.uk/efo/EFO_0000828 denotes nose
T75 12137-12143 http://purl.obolibrary.org/obo/CLO_0001658 denotes active
T76 13018-13030 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T77 13035-13042 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T78 13148-13155 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T79 13220-13221 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T80 13280-13283 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T81 13318-13323 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T82 13318-13323 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T83 13325-13327 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T84 13590-13597 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T85 13707-13709 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T86 14000-14001 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T87 14115-14118 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T88 14267-14268 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T89 14389-14394 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T90 14482-14484 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T91 14489-14491 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T92 14489-14491 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T93 14703-14704 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T94 14806-14811 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T95 14925-14932 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T96 14967-14971 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T97 14983-14988 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T98 15056-15057 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T99 15149-15150 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T100 15435-15440 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T101 15790-15795 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T102 16031-16032 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T103 16187-16189 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T104 16242-16244 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T105 16393-16394 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T106 16539-16540 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T107 16601-16606 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T108 17133-17135 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T109 17147-17150 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T110 17324-17334 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing is
T111 17369-17370 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T112 17393-17395 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T113 17513-17520 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T114 17567-17568 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T115 18254-18267 http://purl.obolibrary.org/obo/OBI_0000245 denotes organisations
T116 18414-18415 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T117 18469-18472 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T118 18794-18799 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T119 19117-19122 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T120 19215-19217 http://purl.obolibrary.org/obo/CLO_0007874 denotes MS
T121 19604-19605 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T122 19626-19636 http://purl.obolibrary.org/obo/OBI_0000245 denotes organising
T123 19671-19673 http://purl.obolibrary.org/obo/CLO_0007336 denotes LM
T124 19760-19762 http://purl.obolibrary.org/obo/CLO_0007336 denotes LM
T125 19881-19883 http://purl.obolibrary.org/obo/PR_000010213 denotes MB
T126 19941-19943 http://purl.obolibrary.org/obo/CLO_0007731 denotes MJ
T127 20160-20170 http://purl.obolibrary.org/obo/OBI_0000245 denotes organising

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 438-448 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T2 640-648 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T3 1276-1278 Chemical denotes MN http://purl.obolibrary.org/obo/CHEBI_141442
T4 2907-2909 Chemical denotes MN http://purl.obolibrary.org/obo/CHEBI_141442
T5 2978-2980 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T6 2982-2984 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T7 2987-2989 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T8 3058-3060 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T9 3063-3065 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T10 3068-3070 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T11 3121-3123 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T12 3126-3128 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T13 3130-3132 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T14 3243-3245 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
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LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 3853-3874 http://purl.obolibrary.org/obo/GO_0001171 denotes reverse-transcription
T2 3861-3874 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T3 11007-11017 http://purl.obolibrary.org/obo/GO_0065007 denotes Regulation
T4 11019-11029 http://purl.obolibrary.org/obo/GO_0065007 denotes Regulation
T5 13201-13216 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-121 Sentence denotes Serological and molecular findings during SARS-CoV-2 infection: the first case study in Finland, January to February 2020
T2 123-131 Sentence denotes Abstract
T3 132-225 Sentence denotes The first case of coronavirus disease (COVID-19) in Finland was confirmed on 29 January 2020.
T4 226-259 Sentence denotes No secondary cases were detected.
T5 260-352 Sentence denotes We describe the clinical picture and laboratory findings 3–23 days since the first symptoms.
T6 353-497 Sentence denotes The SARS-CoV-2/Finland/1/2020 virus strain was isolated, the genome showing a single nucleotide substitution to the reference strain from Wuhan.
T7 498-649 Sentence denotes Neutralising antibody response appeared within 9 days along with specific IgM and IgG response, targeting particularly nucleocapsid and spike proteins.
T8 651-771 Sentence denotes On 31 December 2019, a cluster of pneumonia cases of unknown aetiology was reported in Wuhan, Hubei Province, China [1].
T9 772-886 Sentence denotes Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) was isolated by Chinese scientists on 7 January 2020.
T10 887-1003 Sentence denotes To date, the SARS-CoV-2 virus causing the coronavirus disease (COVID-19) pandemic is spreading throughout the world.
T11 1004-1155 Sentence denotes Here we describe the timeline of events around the first COVID-19 case imported to Finland, and summarise the clinical, molecular and serological data.
T12 1156-1345 Sentence denotes Successful SARS-CoV-2/Finland/1/2020 isolation enabled us to use the cytopathic effect (CPE)-based microneutralisation (MN) assay to detect SARS-CoV-2-specific neutralising antibody levels.
T13 1346-1500 Sentence denotes Diagnostic serum samples of the case and three close contacts were analysed and compared with serum samples from the Finnish population collected in 2019.
T14 1502-1563 Sentence denotes Clinical presentation and laboratory confirmation of the case
T15 1564-1710 Sentence denotes The first COVID-19 case in Finland was a female Chinese tourist in her 30s, who had left Wuhan on 22 January and arrived in Finland on 23 January.
T16 1711-1787 Sentence denotes Her first symptoms were a runny nose on 26 January and nausea on 27 January.
T17 1788-1881 Sentence denotes Because of high fever (39 °C), weakness and cough she sought medical attention on 28 January.
T18 1882-2096 Sentence denotes Suspicion of COVID-19 led to her direct transfer to the Lapland Central Hospital in Rovaniemi, where she was isolated and sampled on 28 and 29 January for laboratory confirmation of SARS-CoV-2 infection (Figure 1).
T19 2097-2315 Sentence denotes SARS-CoV-2 infection was confirmed from nasopharyngeal samples on 29 January by the Helsinki University Hospital Laboratory (HUSLAB), and further confirmed at the Finnish Institute for Health and Welfare (THL) (Table).
T20 2316-2471 Sentence denotes Both laboratories performed real-time RT-PCR testing for three targets: the envelope (E), the RNA-dependent RNA polymerase (RdRp) and the nucleocapsid (N).
T21 2472-2534 Sentence denotes Primers and probes were based on the Corman et al. method [2].
T22 2535-2597 Sentence denotes Cycle threshold (Ct) values above 37 were considered negative.
T23 2598-2700 Sentence denotes Figure 1 Timeline of events around the first COVID-19 case imported to Finland, January–February 2020
T24 2701-2731 Sentence denotes COVID-19: coronavirus disease.
T25 2732-2828 Sentence denotes Table Laboratory data of the first case of SARS-CoV-2 infection, Finland, January–February 2020
T26 2829-2919 Sentence denotes Sampling day Day since the first symptoms Specimen PCR done at E RdRp N MN IgM IgG
T27 2920-2989 Sentence denotes 28 Jan 2020Day 3 NPS HUSTHL ND30.49 ND30.48 ND31.59 NA NA NA
T28 2990-3070 Sentence denotes 29 Jan 2020Day 4 NPA HUSTHL 31.1827.13 27.56 28.43 28.2928.73 NA NA NA
T29 3071-3132 Sentence denotes NPS HUSTHL 28.1529.59 27.1330.87 28.8231.78 NA NA NA
T30 3133-3187 Sentence denotes Serum THLUH NegNeg NegNeg NegNeg < 4 < 20 < 20
T31 3188-3253 Sentence denotes 03 Feb 2020Day 9 NPS HUSTHL NegNeg NegNeg NegNeg NA NA NA
T32 3254-3289 Sentence denotes Serum UH ND Neg Neg 60 80 80
T33 3290-3356 Sentence denotes 04 Feb 2020Day 10 NPS HUSTHL NegNeg NegNeg NegNeg NA NA NA
T34 3357-3392 Sentence denotes Serum ND ND ND ND 72 160 160
T35 3393-3453 Sentence denotes 14 Feb 2020Day 20 Serum UH Neg Neg Neg 160 320 1,280
T36 3454-3520 Sentence denotes 17 Feb 2020Day 23 NPS HUSTHL NegNeg NegNeg NegNeg NA NA NA
T37 3521-3551 Sentence denotes E: envelope protein gene; HUS:
T38 3552-3884 Sentence denotes Helsinki University Hospital Laboratory; IgG: immunoglobulin G; IgM: immunoglobulin M; MN: microneutralisation test; N: nucleocapsid protein gene; NA: not applicable; ND: not done; Neg: negative; NPA: nasopharyngeal aspirate; NPS: nasopharyngeal swab; RdRp: RNA-dependent RNA polymerase gene; RT-PCR: reverse-transcription PCR; THL:
T39 3885-3930 Sentence denotes Finnish Institute for Health and Welfare; UH:
T40 3931-3954 Sentence denotes University of Helsinki.
T41 3955-4014 Sentence denotes The case had mild symptoms throughout the isolation period.
T42 4015-4143 Sentence denotes She was tested PCR-negative in 3 and 4 February samples and, as considered asymptomatic, discharged from hospital on 5 February.
T43 4144-4233 Sentence denotes One additional sample for serology and PCR was taken on 14 and 17 February, respectively.
T44 4234-4305 Sentence denotes Altogether 21 close contacts were identified of whom we could reach 17.
T45 4306-4374 Sentence denotes Fourteen were still in Finland and placed in quarantine for 14 days.
T46 4375-4516 Sentence denotes Information about three close contacts that had left the country was communicated to the competent authorities in their respective countries.
T47 4517-4582 Sentence denotes For the remaining four close contacts, we had no contact details.
T48 4583-4726 Sentence denotes Two of the 21 close contacts were closely co-exposed and therefore sampled on Days 4, 10, 12 and 14 after the first symptoms of the index case.
T49 4727-4812 Sentence denotes Follow-up of all contacts ended on 11 February without secondary transmission events.
T50 4814-4855 Sentence denotes SARS-CoV-2/Finland/1/2020 virus isolation
T51 4856-5068 Sentence denotes The SARS-CoV-2 virus SARS-CoV-2/Finland/1/2020 was isolated in a biosafety level 3 (BSL-3) laboratory in Vero E6 cells from the Day 4 nasopharyngeal swab (NPS) and nasopharyngeal aspirate (NPA) specimens (Table).
T52 5069-5355 Sentence denotes The samples were inoculated into the cells for 1 h at 37 °C and 5% CO2 and fresh culture medium (Eagle's minimum essential medium (EMEM) supplemented with 2% fetal bovine serum (FBS), 0.6 μg/mL penicillin, 60 μg/mL streptomycin, 2 mM L-glutamine, 20 mM HEPES) were added for incubation.
T53 5356-5509 Sentence denotes On the 4th day of incubation, half of the cultures were blind-passaged onto fresh Vero E6 cells and the rest of original passages were incubated further.
T54 5510-5591 Sentence denotes After 4 days incubation a clear CPE was detected in the NPA-originated passage 2.
T55 5592-5738 Sentence denotes The propagation of stock virus was done by passaging a low virus dose once again in Vero E6 cells, and virus culture was harvested on the 3rd day.
T56 5739-5782 Sentence denotes Virus concentration was followed by RT-PCR.
T57 5783-5989 Sentence denotes The Ct value for virus passage 1 on the 6th day of incubation was 17.65 and for passage 2 on the 2nd day, before any CPE was 20.63, whereas those of the NPS specimen remained at Ct values between 35 and 36.
T58 5991-6040 Sentence denotes SARS-CoV-2/Finland/1/2020 whole-genome sequencing
T59 6041-6295 Sentence denotes Nearly the complete coding region of SARS-CoV-2 (GenBank accession number: MT020781) was sequenced from the NPS collected on Day 4 (Table) and the complete coding region was sequenced from the virus isolate obtained after three passages in Vero E6 cells.
T60 6296-6550 Sentence denotes The virus had 1 nt substitution C21707T compared with the reference strain Wuhan-Hu-1 collected in Wuhan China, December 2019 (NC_045512) [3] which had led to a histidine to tyrosine (H49Y) substitution in the N-terminal domain of the spike glycoprotein.
T61 6552-6601 Sentence denotes Antibody response during the SARS-CoV-2 infection
T62 6602-6719 Sentence denotes Serum samples were collected from the index case on Days 4, 9, 10 and 20 from onset of the first symptoms (Figure 1).
T63 6720-7005 Sentence denotes Presence of serum IgM and IgG antibodies against SARS-CoV-2 was analysed by immunofluorescence assays (IFA) based on Vero E6 cells infected with passage 4 of the patient’s isolate SARS-CoV-2/Finland/1/2020 virus and transferred onto microscope slides and fixed with acetone (Figure 2).
T64 7006-7111 Sentence denotes Serum samples from the index case were serially diluted and incubated for 2 h for IgM and 30 min for IgG.
T65 7112-7222 Sentence denotes Antibodies were visualised with fluorescein isothiocyanate (FITC)-conjugated anti-human IgM or IgG antibodies.
T66 7223-7396 Sentence denotes While the antibodies were undetectable on Day 4 after onset of symptoms, IgG titres rose to 80 and 1,280 and IgM titres to 80 and 320 on Days 9 and 20, respectively (Table).
T67 7397-7546 Sentence denotes Random serum samples from staff members of the University of Helsinki (n = 19) did not show specific binding at dilutions greater than 20 (Figure 2).
T68 7547-7651 Sentence denotes Figure 2 Immunofluorescence assay of serum samples, COVID-19 index case, Finland, January–February 2020
T69 7652-7687 Sentence denotes COVID-19: coronavirus disease 2019.
T70 7688-7828 Sentence denotes Anti-SARS-CoV-2 IgM and IgG antibodies were detectable by immunofluorescence assay in samples from Days 9, 10 and 20 after onset of illness.
T71 7829-7920 Sentence denotes Both IgM and IgG were found at a titre of 80 on Day 9, titres on Day 20 were 320 and 1,280.
T72 7921-8043 Sentence denotes As an example, dilutions 1:20 and 1:160 from the Day 20 sample are shown for, respectively, IgM and IgG of the index case.
T73 8044-8084 Sentence denotes Dilution 20 shown for the control serum.
T74 8085-8278 Sentence denotes Mock- and SARS-CoV2-infected Vero E6 cells collected on Day 6 post infection were lysed in Laemmli sample buffer, and Western blotting (WB) of lysates was performed as described previously [4].
T75 8279-8388 Sentence denotes At 1:200 dilution, the convalescent serum on Day 20 identified SARS-CoV2 N, S and E protein bands (Figure 3).
T76 8389-8477 Sentence denotes At higher exposure, all bands were detectable even at 1:1,600 serum dilution (Figure 3).
T77 8478-8641 Sentence denotes Figure 3 Western blot of mock- and SARS-CoV-2 infected Vero E6 cells using patient serum collected 20 days after onset of symptoms, Finland, January–February 2020
T78 8642-8739 Sentence denotes Top left panel: total protein staining (Ponceau S) of the nitrocellulose membrane before probing.
T79 8740-8833 Sentence denotes Top right panel: strips probed with different dilutions of the patient serum at low exposure.
T80 8834-8917 Sentence denotes Bottom panel: the same membranes individually contrasted for higher band intensity.
T81 8918-9087 Sentence denotes The arrows indicate SARS-CoV-2 proteins, the labelling assumes that the migration of SARS-CoV-2 proteins was similar to that of Vero E6-expressed SARS-CoV proteins [23].
T82 9088-9172 Sentence denotes The bands migrating at ca 110 and 90 kDa probably represent S1 and S2, respectively.
T83 9173-9230 Sentence denotes Marker M: Precision Plus Dual Colour Standards (Bio-Rad).
T84 9231-9360 Sentence denotes The detection was done using Odyssey Infrared Imaging System (LI-COR) using goat anti-human IR800 conjugate at 1:10,000 dilution.
T85 9361-9476 Sentence denotes SARS-CoV-2-specific neutralising antibody levels were measured in duplicate with the MN test in a BSL-3 laboratory.
T86 9477-9652 Sentence denotes The serum samples were heat-inactivated at 56 °C for 30 min and 2-fold serially diluted starting from 1:4 in EMEM supplemented with 2% of heat-inactivated FBS and antibiotics.
T87 9653-9791 Sentence denotes Fifty plaque‐forming units (PFU) of the SARS-CoV-2/Finland/1/2020 strain were added to the serum dilutions and incubated for 1 h at 37 °C.
T88 9792-9936 Sentence denotes Vero E6 cells (5 × 104/well) were added to the virus–serum mix, and the mixture was incubated in 96-well plates for 4 days at 37 °C with 5% CO2.
T89 9937-9972 Sentence denotes Neutralisation was assessed by CPE.
T90 9973-10125 Sentence denotes The neutralisation endpoint was determined as the 50% endpoint of the serum that inhibited the SARS-CoV-2 infection observed by CPE of inoculated cells.
T91 10126-10243 Sentence denotes Diagnostic serum samples from the index case and her three asymptomatic close contacts were studied with the MN test.
T92 10244-10322 Sentence denotes During the acute phase of infection, no neutralising antibodies were detected.
T93 10323-10449 Sentence denotes The patient seroconverted for neutralising antibodies between Day 4 and 9, with the titre increasing to 160 on Day 20 (Table).
T94 10450-10535 Sentence denotes The serum specimens were confirmed not to be toxic or infective to the cells as such.
T95 10536-10613 Sentence denotes Serum samples taken from the three close contacts tested negative in MN test.
T96 10614-10729 Sentence denotes We also tested serum samples collected in 2019 from 83 Finnish subjects aged 4 to 89 years and all tested negative.
T97 10730-10904 Sentence denotes Sera known to be positive for IgG against human coronavirus OC43 and 229E [5] and rabbit or guinea pig antibody against SARS-CoV N protein [6] could not neutralise the virus.
T98 10906-10923 Sentence denotes Ethical statement
T99 10924-11234 Sentence denotes The investigations were carried out in accordance with the General Data Protection Regulation (Regulation (EU) 2016/679 and Directive 95/46/EC) and the Finnish Personal Data Act (Finlex 523/1999) The Finnish Communicable Diseases Act (Finlex 1227/2016) allows sampling for diagnostic and surveillance purposes.
T100 11235-11428 Sentence denotes The convalescent serum sample was obtained on 14 February through informed consent of the patient and research permits (TYH2018322, TYH2019263) from the Helsinki University Hospital Laboratory.
T101 11429-11489 Sentence denotes Finnish population serum samples were collected during 2019.
T102 11490-11635 Sentence denotes The study protocol was approved by the Ethics Committee of the Department of Medicine, Helsinki University Hospital (Permission 433/13/03/00/15).
T103 11636-11723 Sentence denotes Serum samples of University of Helsinki staff members were used under informed consent.
T104 11725-11735 Sentence denotes Discussion
T105 11736-11864 Sentence denotes In the early phase of the COVID-19 outbreak, confirmed cases outside China were mostly imported among travellers from Wuhan [7].
T106 11865-11959 Sentence denotes The first case in Finland was detected on 29 January among the first imported cases in Europe.
T107 11960-12081 Sentence denotes The case presented mild symptoms without pneumonia: runny nose, nausea, high fever, cough, muscular weakness and fatigue.
T108 12082-12195 Sentence denotes No secondary transmission events were detected despite active follow-up by the Lapland Hospital district and THL.
T109 12196-12301 Sentence denotes As at 17 March 2020, 358 additional laboratory-confirmed cases of COVID-19 have been detected in Finland.
T110 12302-12442 Sentence denotes Many of them are travel-related (mostly from northern Italy and Austria) but there is also local transmission from the travel-related cases.
T111 12443-12690 Sentence denotes The risk of widespread national community transmission of COVID-19 infection in the European Union, European Economic Area and the United Kingdom in the coming weeks is considered high by the European Centre for Disease Prevention and Control [8].
T112 12691-12839 Sentence denotes The sequence of the viral genome of the patient was nearly identical to the reference strain from Wuhan, reflecting an early importation from China.
T113 12840-12976 Sentence denotes Later sequence information in Finland (up to 2 March) showed clustering with strains circulating in Italy (see nextstrain.org/ncov) [9].
T114 12977-13251 Sentence denotes Current guidelines from the World Health Organization for testing COVID-19 recommend collection of both acute and convalescent serum samples from patients for serological testing, which can support the identification of the immune response to a specific viral pathogen [10].
T115 13252-13389 Sentence denotes The SARS-CoV-2 nucleic acid has been found also in anal swabs and blood [11], however we did not detect it in serum samples in this case.
T116 13390-13488 Sentence denotes As yet, only limited data are available on antibody responses during SARS-CoV-2 infection [11,12].
T117 13489-13669 Sentence denotes Further studies are needed to better understand the seroprevalence of antibodies to different corona viruses in populations and the role of these antibodies in the risk of disease.
T118 13670-13899 Sentence denotes In accordance with earlier findings [11], we found that both IgM and IgG titres were low or undetectable at on Day 4 (the second day after admission to hospital) yet increasing on Day 9–10, i.e. 5–6 days after the first sampling.
T119 13900-14057 Sentence denotes Using other detection methods beyond IFA as well as recombinant antigens and analysing samples from a larger number of patients will shed more light on this.
T120 14058-14205 Sentence denotes The time of first appearance of anti-SARS-CoV antibodies has ranged from Day 3 to 42 and Day 5 to 47 for IgM and IgG antibodies, respectively [13].
T121 14206-14395 Sentence denotes The WB of the serum sample collected at convalescence showed a prominent response against the N and S protein, confirming their role as main candidate diagnostic targets for antibody tests.
T122 14396-14501 Sentence denotes However, the patient serum appeared to recognise also the E protein and the processed S1 and S2 proteins.
T123 14502-14646 Sentence denotes Although WB detects mainly linear epitopes, the strong antibody response against the S protein correlated well with the results of the MN assay.
T124 14647-14847 Sentence denotes Monitoring of the binding antibodies is suggested to be a more sensitive method than measuring functional neutralising antibodies for serological detection of human coronavirus (hCoV) infections [14].
T125 14848-14938 Sentence denotes However, hCoV OC43 and 229E samples can also cross-react with SARS-CoV ELISA testing [15].
T126 14939-15075 Sentence denotes The SARS-CoV-2 CPE-based MN test using live virus appeared to be very specific, while laborious to conduct requiring a BSL-3 laboratory.
T127 15076-15276 Sentence denotes An increase of at least 4-fold in the neutralising antibodies indicating a positive response was detected at Day 9–10 after the first symptoms and at Day 20, the antibody levels were still increasing.
T128 15277-15441 Sentence denotes Our findings indicate that the MN assay is specific for functional SARS-CoV-2 antibodies and could be applied in surveillance of population immunity for this virus.
T129 15442-15620 Sentence denotes The assay can be used as confirmatory tool for SARS-CoV-2 specificity in the development of more accessible diagnostic tools such as assays based on detecting binding antibodies.
T130 15621-15804 Sentence denotes Previous studies on patients with SARS-CoV infection indicated that the median time for seroconversion was 20 days, by which time 60–75% of patients had IgG against the virus [13,16].
T131 15805-15998 Sentence denotes That IgM and IgG antibodies were present within 2 weeks from the onset of symptoms in our study suggests that early convalescent patients may be suitable sources of therapeutic antibodies [17].
T132 15999-16246 Sentence denotes In accordance with our finding, a recent preprint report on patients admitted to hospital with confirmed SARS-CoV-2 infection in China indicated that the median time to seroconversion was 11–14 days, depending on the immunological assay used [18].
T133 16247-16392 Sentence denotes No neutralising SARS-CoV-2 antibodies were detected in the close contacts nor in the control population samples collected during 2019 in Finland.
T134 16393-16538 Sentence denotes A low prevalence (0.21%) of antibodies against Middle East respiratory syndrome coronavirus was reported in the general population of Qatar [19].
T135 16539-16788 Sentence denotes A meta-analysis of seroprevalence to SARS-CoV among different human populations yielded an overall low seroprevalence (0.10%), although it was slightly higher (0.23%) among healthcare workers and others who had close contact with SARS patients [20].
T136 16789-16875 Sentence denotes Binding and neutralising HCoV antibodies were found to be higher in older adults [14].
T137 16876-17137 Sentence denotes In total 97% and 99% of serum samples from healthy adults had antibodies to HCoV-229E and HCoV-OC43, respectively [21], and 75% and 65% of the children in the age group 2.5–3.5 years were found to be seropositive for, respectively, HCoV-NL63 and HCoV-229E [22].
T138 17138-17397 Sentence denotes While it has been suggested that the late seroconversion in most SARS patients reduces the value of serological assays during the incubation and initial phases of SARS [13], serological testing is suggested for the confirmation of a SARS CoV-2 infection [11].
T139 17398-17625 Sentence denotes After understanding better the kinetics, specificity and sensitivity of the assays in development, the serological testing may help contact tracing of clusters and have a role in diagnosing acute and past SARS-CoV-2 infections.
T140 17627-17643 Sentence denotes Acknowledgements
T141 17644-17871 Sentence denotes We gratefully thank Mira Utriainen, Sanna Mäki, Minna Haanpää, Marja-Liisa Ollonen, Johanna Rintamäki, Hanna Valtonen, Riitta Santanen, Katri Keino, Alena Kaijalainen and Johanna Mustajoki for their expert technical assistance.
T142 17872-17979 Sentence denotes Christel Pussinen and Mervi Nosa are thanked for their contribution to Finnish population sera collections.
T143 17980-18076 Sentence denotes We also want to thank the anonymous patient for her help and collaboration throughout the study.
T144 18077-18085 Sentence denotes Funding:
T145 18086-18241 Sentence denotes The study was supported by funds from the Finnish Institute for Health and Welfare (THL), Helsinki University Hospital (HUSLAB) and University of Helsinki.
T146 18242-18384 Sentence denotes The funding organisations had no role in the study design, data collection and analysis, decision to publish or preparation of the manuscript.
T147 18386-18529 Sentence denotes Conflict of interest: LS is a co-investigator in an unrelated study, for which THL has received research funding from GlaxoSmithKline Vaccines.
T148 18530-18590 Sentence denotes The other authors report no potential conflicts of interest.
T149 18591-18614 Sentence denotes Authors’ contributions:
T150 18615-18678 Sentence denotes All authors attest they meet the ICMJE criteria for authorship.
T151 18679-18766 Sentence denotes All authors have contributed to, seen and approved the final version of the manuscript.
T152 18767-18970 Sentence denotes AH set up and performed MN tests, participated in laboratory confirmation of COVID-19 suspicions, coordinated and participated in the collections of the Finnish population sera, and wrote the manuscript.
T153 18971-19041 Sentence denotes TS performed the whole genome sequencing and genetic characterisation.
T154 19042-19100 Sentence denotes SK and JH performed the IFA and WB analysis, respectively.
T155 19101-19210 Sentence denotes PÖ isolated the virus and was responsible of the SARS-CoV-2 related biosafety level 3 laboratory work at THL.
T156 19211-19297 Sentence denotes MP, MS, TP and JS participated in THL COVID-19 situation monitoring group work of THL.
T157 19298-19367 Sentence denotes SB and MM participated in serological analysis planning group of THL.
T158 19368-19419 Sentence denotes SB contributed in the interpretation of MN results.
T159 19420-19532 Sentence denotes ER set up the real-time RT-PCR method at THL and participated in laboratory confirmation of COVID-19 suspicions.
T160 19533-19596 Sentence denotes AK and TS participated in collection of the convalescent serum.
T161 19597-19665 Sentence denotes AK had a significant role to organising convalescent serum sampling.
T162 19666-19751 Sentence denotes HKK, LM and ML were in charge of primary diagnostic of COVID-19 suspicions in HUSLAB.
T163 19752-19880 Sentence denotes HKK and LM also set up the real-time RT-PCR method at HUSLAB and participated in laboratory sample logistics from HUSLAB to THL.
T164 19881-19940 Sentence denotes MB was responsible for the care of the patient in hospital.
T165 19941-20015 Sentence denotes MJ and LS participated in interviewing the index case and contact tracing.
T166 20016-20199 Sentence denotes OV was responsible for virological and serological studies in HUSLAB and University of Helsinki, participated in the designing of the study and organising convalescent serum sampling.
T167 20200-20379 Sentence denotes NI and CSK were responsible of THL laboratory confirmation of COVID-19 suspicions, participated in COVID-19 situation monitoring group work of THL and laboratory sample logistics.
T168 20380-20503 Sentence denotes CSK was also responsible for the collections of the Finnish population sera and participated in the designing of the study.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 685-694 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T2 1737-1747 Phenotype denotes runny nose http://purl.obolibrary.org/obo/HP_0031417
T3 1766-1772 Phenotype denotes nausea http://purl.obolibrary.org/obo/HP_0002018
T4 1804-1809 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T5 1832-1837 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T6 12001-12010 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T7 12012-12022 Phenotype denotes runny nose http://purl.obolibrary.org/obo/HP_0031417
T8 12024-12030 Phenotype denotes nausea http://purl.obolibrary.org/obo/HP_0002018
T9 12037-12042 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T10 12044-12049 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T11 12051-12068 Phenotype denotes muscular weakness http://purl.obolibrary.org/obo/HP_0001324
T12 12073-12080 Phenotype denotes fatigue http://purl.obolibrary.org/obo/HP_0012378

2_test

Id Subject Object Predicate Lexical cue
32209163-31992387-29337496 2531-2532 31992387 denotes 2
32209163-32015508-29337497 6435-6436 32015508 denotes 3
32209163-27355360-29337498 8275-8276 27355360 denotes 4
32209163-15450134-29337499 9083-9085 15450134 denotes 23
32209163-9466772-29337500 10805-10806 9466772 denotes 5
32209163-16227300-29337501 10870-10871 16227300 denotes 6
32209163-32046819-29337502 11861-11862 32046819 denotes 7
32209163-29790939-29337503 12973-12974 29790939 denotes 9
32209163-32065057-29337504 13325-13327 32065057 denotes 11
32209163-32065057-29337505 13481-13483 32065057 denotes 11
32209163-32064855-29337506 13484-13486 32064855 denotes 12
32209163-32065057-29337507 13707-13709 32065057 denotes 11
32209163-15031782-29337508 14201-14203 15031782 denotes 13
32209163-32073157-29337509 14843-14845 32073157 denotes 14
32209163-15583332-29337510 14934-14936 15583332 denotes 15
32209163-15031782-29337511 15797-15799 15031782 denotes 13
32209163-12781535-29337512 15800-15802 12781535 denotes 16
32209163-30906787-29337513 16534-16536 30906787 denotes 19
32209163-16490123-29337514 16784-16786 16490123 denotes 20
32209163-32073157-29337515 16871-16873 32073157 denotes 14
32209163-15897988-29337516 16991-16993 15897988 denotes 21
32209163-18495857-29337517 17133-17135 18495857 denotes 22
32209163-15031782-29337518 17307-17309 15031782 denotes 13
32209163-32065057-29337519 17393-17395 32065057 denotes 11

MyTest

Id Subject Object Predicate Lexical cue
32209163-31992387-29337496 2531-2532 31992387 denotes 2
32209163-32015508-29337497 6435-6436 32015508 denotes 3
32209163-27355360-29337498 8275-8276 27355360 denotes 4
32209163-15450134-29337499 9083-9085 15450134 denotes 23
32209163-9466772-29337500 10805-10806 9466772 denotes 5
32209163-16227300-29337501 10870-10871 16227300 denotes 6
32209163-32046819-29337502 11861-11862 32046819 denotes 7
32209163-29790939-29337503 12973-12974 29790939 denotes 9
32209163-32065057-29337504 13325-13327 32065057 denotes 11
32209163-32065057-29337505 13481-13483 32065057 denotes 11
32209163-32064855-29337506 13484-13486 32064855 denotes 12
32209163-32065057-29337507 13707-13709 32065057 denotes 11
32209163-15031782-29337508 14201-14203 15031782 denotes 13
32209163-32073157-29337509 14843-14845 32073157 denotes 14
32209163-15583332-29337510 14934-14936 15583332 denotes 15
32209163-15031782-29337511 15797-15799 15031782 denotes 13
32209163-12781535-29337512 15800-15802 12781535 denotes 16
32209163-30906787-29337513 16534-16536 30906787 denotes 19
32209163-16490123-29337514 16784-16786 16490123 denotes 20
32209163-32073157-29337515 16871-16873 32073157 denotes 14
32209163-15897988-29337516 16991-16993 15897988 denotes 21
32209163-18495857-29337517 17133-17135 18495857 denotes 22
32209163-15031782-29337518 17307-17309 15031782 denotes 13
32209163-32065057-29337519 17393-17395 32065057 denotes 11